Phenotypic and molecular characterization of rice germplasm lines and identification of novel source for low soil phosphorus tolerance in rice
Phosphorus (P) is an essential macro-nutrient required for growth and development of all crop plants including rice. Low availability of P in the soils manifests in terms of impeding crop growth leading to yield losses in rice. Adequate genetic variability for low soil P tolerance and also P use eff...
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| Veröffentlicht in: | Euphytica 2019-07, Vol.215 (7), p.1-15, Article 118 |
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| creator | Swamy, H. K. Mahadeva Anila, M. Kale, Ravindra R. Bhadana, V. P. Anantha, M. S. Brajendra, P. Hajira, S. K. Balachiranjeevi, C. H. Prasanna, B. Laxmi Pranathi, K. Dilip, T. Bhaskar, S. Kumar, V. Abhilash Kousik, M. B. V. N. Harika, G. Swapnil, K. Rekha, G. Cheralu, C. Shankar, V. Gouri Reddy, S. Narendra Kumar, Sudhir Balachandran, S. M. Madhav, M. S. Kumar, R. Mahendra Sundaram, R. M. |
| description | Phosphorus (P) is an essential macro-nutrient required for growth and development of all crop plants including rice. Low availability of P in the soils manifests in terms of impeding crop growth leading to yield losses in rice. Adequate genetic variability for low soil P tolerance and also P use efficiency has been documented in rice and a major QTL called
Pup1
, conferring tolerance to low soil P has been identified, characterized and cloned from an Indian landrace, Kasalath. In the present study, a set of 98 germplasm lines collected from North-Eastern part of India were characterized for low soil P tolerance by screening them in a plot with low soil P (with available P 20 kg ha
−1
). The rice lines showed significantly high genetic variability for low soil P tolerance associated traits. Stress indices were estimated based on yield under normal and low soil P conditions and cluster analysis based on the stress indices; yield under normal and low soil P condition grouped the genotypes into highly tolerant, tolerant and sensitive to low soil P. Among the rice lines, 18 showed tolerance to low soil P (i.e. yield reduction |
| doi_str_mv | 10.1007/s10681-019-2443-0 |
| format | Article |
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Pup1
, conferring tolerance to low soil P has been identified, characterized and cloned from an Indian landrace, Kasalath. In the present study, a set of 98 germplasm lines collected from North-Eastern part of India were characterized for low soil P tolerance by screening them in a plot with low soil P (with available P < 2.0 kg ha
−1
) and also a plot with normal soil P (available P > 20 kg ha
−1
). The rice lines showed significantly high genetic variability for low soil P tolerance associated traits. Stress indices were estimated based on yield under normal and low soil P conditions and cluster analysis based on the stress indices; yield under normal and low soil P condition grouped the genotypes into highly tolerant, tolerant and sensitive to low soil P. Among the rice lines, 18 showed tolerance to low soil P (i.e. yield reduction < 70% in low soil P condition). The genotypic analysis based on
Pup1
associated molecular markers revealed the presence of complete or partial
Pup1
genomic region in most of the germplasm lines. Interestingly, a landrace called Wazuhophek was observed to be completely devoid of
Pup1
and hence it can serve as novel source for low P tolerance.</description><identifier>ISSN: 0014-2336</identifier><identifier>EISSN: 1573-5060</identifier><identifier>DOI: 10.1007/s10681-019-2443-0</identifier><language>eng</language><publisher>Dordrecht: Springer Netherlands</publisher><subject>Agricultural production ; Analysis ; Biomedical and Life Sciences ; Biotechnology ; Cereal crops ; Cluster analysis ; Crop growth ; Genetic variability ; Genotypes ; Germplasm ; Life Sciences ; Oryza ; Phosphorus ; Phosphorus content ; Plant Genetics and Genomics ; Plant Pathology ; Plant Physiology ; Plant Sciences ; Quantitative genetics ; Quantitative trait loci ; Rice ; Soil conditions ; Soils</subject><ispartof>Euphytica, 2019-07, Vol.215 (7), p.1-15, Article 118</ispartof><rights>Springer Nature B.V. 2019</rights><rights>COPYRIGHT 2019 Springer</rights><rights>Euphytica is a copyright of Springer, (2019). All Rights Reserved.</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c421t-b39437c6bbe2dcccf6477e438342b2f553d7a834be8dfa1f4f10edf2ab1eab2a3</citedby><cites>FETCH-LOGICAL-c421t-b39437c6bbe2dcccf6477e438342b2f553d7a834be8dfa1f4f10edf2ab1eab2a3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://link.springer.com/content/pdf/10.1007/s10681-019-2443-0$$EPDF$$P50$$Gspringer$$H</linktopdf><linktohtml>$$Uhttps://link.springer.com/10.1007/s10681-019-2443-0$$EHTML$$P50$$Gspringer$$H</linktohtml><link.rule.ids>314,776,780,27901,27902,41464,42533,51294</link.rule.ids></links><search><creatorcontrib>Swamy, H. K. Mahadeva</creatorcontrib><creatorcontrib>Anila, M.</creatorcontrib><creatorcontrib>Kale, Ravindra R.</creatorcontrib><creatorcontrib>Bhadana, V. P.</creatorcontrib><creatorcontrib>Anantha, M. S.</creatorcontrib><creatorcontrib>Brajendra, P.</creatorcontrib><creatorcontrib>Hajira, S. K.</creatorcontrib><creatorcontrib>Balachiranjeevi, C. H.</creatorcontrib><creatorcontrib>Prasanna, B. Laxmi</creatorcontrib><creatorcontrib>Pranathi, K.</creatorcontrib><creatorcontrib>Dilip, T.</creatorcontrib><creatorcontrib>Bhaskar, S.</creatorcontrib><creatorcontrib>Kumar, V. Abhilash</creatorcontrib><creatorcontrib>Kousik, M. B. V. N.</creatorcontrib><creatorcontrib>Harika, G.</creatorcontrib><creatorcontrib>Swapnil, K.</creatorcontrib><creatorcontrib>Rekha, G.</creatorcontrib><creatorcontrib>Cheralu, C.</creatorcontrib><creatorcontrib>Shankar, V. Gouri</creatorcontrib><creatorcontrib>Reddy, S. Narendra</creatorcontrib><creatorcontrib>Kumar, Sudhir</creatorcontrib><creatorcontrib>Balachandran, S. M.</creatorcontrib><creatorcontrib>Madhav, M. S.</creatorcontrib><creatorcontrib>Kumar, R. Mahendra</creatorcontrib><creatorcontrib>Sundaram, R. M.</creatorcontrib><title>Phenotypic and molecular characterization of rice germplasm lines and identification of novel source for low soil phosphorus tolerance in rice</title><title>Euphytica</title><addtitle>Euphytica</addtitle><description>Phosphorus (P) is an essential macro-nutrient required for growth and development of all crop plants including rice. Low availability of P in the soils manifests in terms of impeding crop growth leading to yield losses in rice. Adequate genetic variability for low soil P tolerance and also P use efficiency has been documented in rice and a major QTL called
Pup1
, conferring tolerance to low soil P has been identified, characterized and cloned from an Indian landrace, Kasalath. In the present study, a set of 98 germplasm lines collected from North-Eastern part of India were characterized for low soil P tolerance by screening them in a plot with low soil P (with available P < 2.0 kg ha
−1
) and also a plot with normal soil P (available P > 20 kg ha
−1
). The rice lines showed significantly high genetic variability for low soil P tolerance associated traits. Stress indices were estimated based on yield under normal and low soil P conditions and cluster analysis based on the stress indices; yield under normal and low soil P condition grouped the genotypes into highly tolerant, tolerant and sensitive to low soil P. Among the rice lines, 18 showed tolerance to low soil P (i.e. yield reduction < 70% in low soil P condition). The genotypic analysis based on
Pup1
associated molecular markers revealed the presence of complete or partial
Pup1
genomic region in most of the germplasm lines. Interestingly, a landrace called Wazuhophek was observed to be completely devoid of
Pup1
and hence it can serve as novel source for low P tolerance.</description><subject>Agricultural production</subject><subject>Analysis</subject><subject>Biomedical and Life Sciences</subject><subject>Biotechnology</subject><subject>Cereal crops</subject><subject>Cluster analysis</subject><subject>Crop growth</subject><subject>Genetic variability</subject><subject>Genotypes</subject><subject>Germplasm</subject><subject>Life Sciences</subject><subject>Oryza</subject><subject>Phosphorus</subject><subject>Phosphorus content</subject><subject>Plant Genetics and Genomics</subject><subject>Plant Pathology</subject><subject>Plant Physiology</subject><subject>Plant Sciences</subject><subject>Quantitative genetics</subject><subject>Quantitative trait loci</subject><subject>Rice</subject><subject>Soil conditions</subject><subject>Soils</subject><issn>0014-2336</issn><issn>1573-5060</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2019</creationdate><recordtype>article</recordtype><sourceid>BENPR</sourceid><recordid>eNp1kcGOFCEQhonRxHH1AbyReO61Cuhm5rjZqGuyiR70TGi62GFDQws9mvUhfGaZbaMnA6RS5P-qKvUz9hrhEgH024ow7LEDPHRCKdnBE7bDXsuuhwGesh0Aqk5IOTxnL2q9B4CD7mHHfn0-UsrrwxIct2nic47kTtEW7o62WLdSCT_tGnLi2fMSHPE7KvMSbZ15DInqIxYmSmvwwf2VpvydIq_5VBric-Ex_2hpiHw55tpeOVW-tm7FpqYI6bH4S_bM21jp1Z94wb6-f_fl-qa7_fTh4_XVbeeUwLUb5UFJ7YZxJDE55_ygtCYl91KJUfi-l5O2LRlpP3mLXnkEmrywI5IdhZUX7M1Wdyn524nqau7bpKm1NEIogHYRm-pyU93ZSCYkn9e2knYmmoPLiXxo_1caFWipERqAG-BKrrWQN0sJsy0PBsGcfTKbT6b5ZM4-mTMjNqY2bWrL_TfK_6HfsKWZSQ</recordid><startdate>20190701</startdate><enddate>20190701</enddate><creator>Swamy, H. 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K. Mahadeva ; Anila, M. ; Kale, Ravindra R. ; Bhadana, V. P. ; Anantha, M. S. ; Brajendra, P. ; Hajira, S. K. ; Balachiranjeevi, C. H. ; Prasanna, B. Laxmi ; Pranathi, K. ; Dilip, T. ; Bhaskar, S. ; Kumar, V. Abhilash ; Kousik, M. B. V. N. ; Harika, G. ; Swapnil, K. ; Rekha, G. ; Cheralu, C. ; Shankar, V. Gouri ; Reddy, S. Narendra ; Kumar, Sudhir ; Balachandran, S. M. ; Madhav, M. S. ; Kumar, R. Mahendra ; Sundaram, R. 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K. Mahadeva</au><au>Anila, M.</au><au>Kale, Ravindra R.</au><au>Bhadana, V. P.</au><au>Anantha, M. S.</au><au>Brajendra, P.</au><au>Hajira, S. K.</au><au>Balachiranjeevi, C. H.</au><au>Prasanna, B. Laxmi</au><au>Pranathi, K.</au><au>Dilip, T.</au><au>Bhaskar, S.</au><au>Kumar, V. Abhilash</au><au>Kousik, M. B. V. N.</au><au>Harika, G.</au><au>Swapnil, K.</au><au>Rekha, G.</au><au>Cheralu, C.</au><au>Shankar, V. Gouri</au><au>Reddy, S. Narendra</au><au>Kumar, Sudhir</au><au>Balachandran, S. M.</au><au>Madhav, M. S.</au><au>Kumar, R. Mahendra</au><au>Sundaram, R. M.</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Phenotypic and molecular characterization of rice germplasm lines and identification of novel source for low soil phosphorus tolerance in rice</atitle><jtitle>Euphytica</jtitle><stitle>Euphytica</stitle><date>2019-07-01</date><risdate>2019</risdate><volume>215</volume><issue>7</issue><spage>1</spage><epage>15</epage><pages>1-15</pages><artnum>118</artnum><issn>0014-2336</issn><eissn>1573-5060</eissn><abstract>Phosphorus (P) is an essential macro-nutrient required for growth and development of all crop plants including rice. Low availability of P in the soils manifests in terms of impeding crop growth leading to yield losses in rice. Adequate genetic variability for low soil P tolerance and also P use efficiency has been documented in rice and a major QTL called
Pup1
, conferring tolerance to low soil P has been identified, characterized and cloned from an Indian landrace, Kasalath. In the present study, a set of 98 germplasm lines collected from North-Eastern part of India were characterized for low soil P tolerance by screening them in a plot with low soil P (with available P < 2.0 kg ha
−1
) and also a plot with normal soil P (available P > 20 kg ha
−1
). The rice lines showed significantly high genetic variability for low soil P tolerance associated traits. Stress indices were estimated based on yield under normal and low soil P conditions and cluster analysis based on the stress indices; yield under normal and low soil P condition grouped the genotypes into highly tolerant, tolerant and sensitive to low soil P. Among the rice lines, 18 showed tolerance to low soil P (i.e. yield reduction < 70% in low soil P condition). The genotypic analysis based on
Pup1
associated molecular markers revealed the presence of complete or partial
Pup1
genomic region in most of the germplasm lines. Interestingly, a landrace called Wazuhophek was observed to be completely devoid of
Pup1
and hence it can serve as novel source for low P tolerance.</abstract><cop>Dordrecht</cop><pub>Springer Netherlands</pub><doi>10.1007/s10681-019-2443-0</doi><tpages>15</tpages></addata></record> |
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| ispartof | Euphytica, 2019-07, Vol.215 (7), p.1-15, Article 118 |
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| language | eng |
| recordid | cdi_proquest_journals_2240040011 |
| source | SpringerLink Journals |
| subjects | Agricultural production Analysis Biomedical and Life Sciences Biotechnology Cereal crops Cluster analysis Crop growth Genetic variability Genotypes Germplasm Life Sciences Oryza Phosphorus Phosphorus content Plant Genetics and Genomics Plant Pathology Plant Physiology Plant Sciences Quantitative genetics Quantitative trait loci Rice Soil conditions Soils |
| title | Phenotypic and molecular characterization of rice germplasm lines and identification of novel source for low soil phosphorus tolerance in rice |
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