Genetic diversity and population demography of narrow‐ridged finless porpoises from South Korea on the basis of mitochondrial DNA variation: Implications for its conservation in East Asia
The narrow‐ridged finless porpoise, Neophocaena asiaeorientalis, is a small cetacean inhabiting the coastal waters of Taiwan, East China, Korea, and Japan, and is threatened by anthropogenic pressures. We analyzed the mitochondrial control region of N. asiaeorientalis from Korean waters to better un...
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Veröffentlicht in: | Marine mammal science 2019-04, Vol.35 (2), p.574-594 |
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description | The narrow‐ridged finless porpoise, Neophocaena asiaeorientalis, is a small cetacean inhabiting the coastal waters of Taiwan, East China, Korea, and Japan, and is threatened by anthropogenic pressures. We analyzed the mitochondrial control region of N. asiaeorientalis from Korean waters to better understand the genetic diversity, population structure, and demographic history through comparison with previously reported sequences from Japan and China. The network and phylogenetic analyses illustrated that few common haplotypes were centrally located, and that most of the unique haplotypes were on the edges of the branches. Moreover, the estimates of fixation indices and gene flow revealed significant genetic differentiation among the regions in East Asia. The mismatch distribution suggested a population expansion in the late Pleistocene. We propose that the current genetic variation in N. asiaeorientalis in East Asia was shaped by historical demographic expansion during the late Pleistocene. The N. asiaeorientalis of Korean waters has the highest diversity observed with the sampling available at this time. However, the abundance of N. asiaeorientalis in Korean waters has rapidly declined and the species needs protection from bycatch. |
doi_str_mv | 10.1111/mms.12563 |
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We analyzed the mitochondrial control region of N. asiaeorientalis from Korean waters to better understand the genetic diversity, population structure, and demographic history through comparison with previously reported sequences from Japan and China. The network and phylogenetic analyses illustrated that few common haplotypes were centrally located, and that most of the unique haplotypes were on the edges of the branches. Moreover, the estimates of fixation indices and gene flow revealed significant genetic differentiation among the regions in East Asia. The mismatch distribution suggested a population expansion in the late Pleistocene. We propose that the current genetic variation in N. asiaeorientalis in East Asia was shaped by historical demographic expansion during the late Pleistocene. The N. asiaeorientalis of Korean waters has the highest diversity observed with the sampling available at this time. However, the abundance of N. asiaeorientalis in Korean waters has rapidly declined and the species needs protection from bycatch.</description><identifier>ISSN: 0824-0469</identifier><identifier>EISSN: 1748-7692</identifier><identifier>DOI: 10.1111/mms.12563</identifier><language>eng</language><publisher>Hoboken, USA: John Wiley & Sons, Inc</publisher><subject>Anthropogenic factors ; Aquatic mammals ; Bycatch ; Coastal waters ; demographic history ; Demographics ; Demography ; Deoxyribonucleic acid ; DNA ; Freshwater mammals ; Gene flow ; Genetic diversity ; Genetic variation ; Haplotypes ; Marine mammals ; Mitochondrial DNA ; narrow‐ridged finless porpoise ; Neophocaena asiaeorientalis ; Phylogeny ; phylogeography ; Pleistocene ; Population genetics ; Population growth ; Population structure ; Porpoises ; Protected species ; Threatened species</subject><ispartof>Marine mammal science, 2019-04, Vol.35 (2), p.574-594</ispartof><rights>2018 Society for Marine Mammalogy</rights><rights>2019 Society for Marine Mammalogy</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c2973-992e870275b8559232229e3d4df30fe45c088c0ecfe70fff32b63d557d04d5803</citedby><cites>FETCH-LOGICAL-c2973-992e870275b8559232229e3d4df30fe45c088c0ecfe70fff32b63d557d04d5803</cites><orcidid>0000-0003-0264-6289</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://onlinelibrary.wiley.com/doi/pdf/10.1111%2Fmms.12563$$EPDF$$P50$$Gwiley$$H</linktopdf><linktohtml>$$Uhttps://onlinelibrary.wiley.com/doi/full/10.1111%2Fmms.12563$$EHTML$$P50$$Gwiley$$H</linktohtml><link.rule.ids>314,778,782,1414,27907,27908,45557,45558</link.rule.ids></links><search><creatorcontrib>Lee, Seon‐Mi</creatorcontrib><creatorcontrib>Park, Kyum Joon</creatorcontrib><creatorcontrib>Kim, Byung‐Yeob</creatorcontrib><creatorcontrib>Min, Mi‐Sook</creatorcontrib><creatorcontrib>Lee, Hang</creatorcontrib><creatorcontrib>Lee, Mu‐Yeong</creatorcontrib><title>Genetic diversity and population demography of narrow‐ridged finless porpoises from South Korea on the basis of mitochondrial DNA variation: Implications for its conservation in East Asia</title><title>Marine mammal science</title><description>The narrow‐ridged finless porpoise, Neophocaena asiaeorientalis, is a small cetacean inhabiting the coastal waters of Taiwan, East China, Korea, and Japan, and is threatened by anthropogenic pressures. We analyzed the mitochondrial control region of N. asiaeorientalis from Korean waters to better understand the genetic diversity, population structure, and demographic history through comparison with previously reported sequences from Japan and China. The network and phylogenetic analyses illustrated that few common haplotypes were centrally located, and that most of the unique haplotypes were on the edges of the branches. Moreover, the estimates of fixation indices and gene flow revealed significant genetic differentiation among the regions in East Asia. The mismatch distribution suggested a population expansion in the late Pleistocene. We propose that the current genetic variation in N. asiaeorientalis in East Asia was shaped by historical demographic expansion during the late Pleistocene. The N. asiaeorientalis of Korean waters has the highest diversity observed with the sampling available at this time. However, the abundance of N. asiaeorientalis in Korean waters has rapidly declined and the species needs protection from bycatch.</description><subject>Anthropogenic factors</subject><subject>Aquatic mammals</subject><subject>Bycatch</subject><subject>Coastal waters</subject><subject>demographic history</subject><subject>Demographics</subject><subject>Demography</subject><subject>Deoxyribonucleic acid</subject><subject>DNA</subject><subject>Freshwater mammals</subject><subject>Gene flow</subject><subject>Genetic diversity</subject><subject>Genetic variation</subject><subject>Haplotypes</subject><subject>Marine mammals</subject><subject>Mitochondrial DNA</subject><subject>narrow‐ridged finless porpoise</subject><subject>Neophocaena asiaeorientalis</subject><subject>Phylogeny</subject><subject>phylogeography</subject><subject>Pleistocene</subject><subject>Population genetics</subject><subject>Population growth</subject><subject>Population structure</subject><subject>Porpoises</subject><subject>Protected species</subject><subject>Threatened species</subject><issn>0824-0469</issn><issn>1748-7692</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2019</creationdate><recordtype>article</recordtype><recordid>eNp1kU1uFDEQhS0EEkNgwQ1KYsWiE7fd7h92o5CEiAQWgXXLY5czjrrbTdkz0ew4AhfiMpwET5ottakq6av3SnqMvS35aZnrbBzjaSlULZ-xVdlUbdHUnXjOVrwVVcGrunvJXsX4wLlQquYr9vsKJ0zegPV7pOjTAfRkYQ7zbtDJhwksjuGe9Lw9QHAwaaLw-OfnL_L2Hi04Pw0YYz6gOfiIERyFEe7CLm3hcyDUkDXSFmGjo49HidGnYLZhsuT1AB-_rGGv83g0-wDX4zx487RkqUDgUwSTF6T98o-f4ELHBOvo9Wv2wukh4pt__YR9v7z4dv6puPl6dX2-vimM6BpZdJ3AtuGiUZtWqU5IIUSH0lbWSe6wUoa3reFoHDbcOSfFppZWqcbyyqqWyxP2btGdKfzYYUz9Q9jRlC17IXhVdU0p20y9XyhDIUZC18_kR02HvuT9MZ0-p9M_pZPZs4V99AMe_g_2t7d3y8VfEFGWIA</recordid><startdate>201904</startdate><enddate>201904</enddate><creator>Lee, Seon‐Mi</creator><creator>Park, Kyum Joon</creator><creator>Kim, Byung‐Yeob</creator><creator>Min, Mi‐Sook</creator><creator>Lee, Hang</creator><creator>Lee, Mu‐Yeong</creator><general>John Wiley & Sons, Inc</general><general>Wiley Subscription Services, Inc</general><scope>AAYXX</scope><scope>CITATION</scope><scope>7QG</scope><scope>7SN</scope><scope>7ST</scope><scope>7TN</scope><scope>C1K</scope><scope>F1W</scope><scope>H95</scope><scope>L.G</scope><scope>SOI</scope><orcidid>https://orcid.org/0000-0003-0264-6289</orcidid></search><sort><creationdate>201904</creationdate><title>Genetic diversity and population demography of narrow‐ridged finless porpoises from South Korea on the basis of mitochondrial DNA variation: Implications for its conservation in East Asia</title><author>Lee, Seon‐Mi ; Park, Kyum Joon ; Kim, Byung‐Yeob ; Min, Mi‐Sook ; Lee, Hang ; Lee, Mu‐Yeong</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c2973-992e870275b8559232229e3d4df30fe45c088c0ecfe70fff32b63d557d04d5803</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2019</creationdate><topic>Anthropogenic factors</topic><topic>Aquatic mammals</topic><topic>Bycatch</topic><topic>Coastal waters</topic><topic>demographic history</topic><topic>Demographics</topic><topic>Demography</topic><topic>Deoxyribonucleic acid</topic><topic>DNA</topic><topic>Freshwater mammals</topic><topic>Gene flow</topic><topic>Genetic diversity</topic><topic>Genetic variation</topic><topic>Haplotypes</topic><topic>Marine mammals</topic><topic>Mitochondrial DNA</topic><topic>narrow‐ridged finless porpoise</topic><topic>Neophocaena asiaeorientalis</topic><topic>Phylogeny</topic><topic>phylogeography</topic><topic>Pleistocene</topic><topic>Population genetics</topic><topic>Population growth</topic><topic>Population structure</topic><topic>Porpoises</topic><topic>Protected species</topic><topic>Threatened species</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Lee, Seon‐Mi</creatorcontrib><creatorcontrib>Park, Kyum Joon</creatorcontrib><creatorcontrib>Kim, Byung‐Yeob</creatorcontrib><creatorcontrib>Min, Mi‐Sook</creatorcontrib><creatorcontrib>Lee, Hang</creatorcontrib><creatorcontrib>Lee, Mu‐Yeong</creatorcontrib><collection>CrossRef</collection><collection>Animal Behavior Abstracts</collection><collection>Ecology Abstracts</collection><collection>Environment Abstracts</collection><collection>Oceanic Abstracts</collection><collection>Environmental Sciences and Pollution Management</collection><collection>ASFA: Aquatic Sciences and Fisheries Abstracts</collection><collection>Aquatic Science & Fisheries Abstracts (ASFA) 1: Biological Sciences & Living Resources</collection><collection>Aquatic Science & Fisheries Abstracts (ASFA) Professional</collection><collection>Environment Abstracts</collection><jtitle>Marine mammal science</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Lee, Seon‐Mi</au><au>Park, Kyum Joon</au><au>Kim, Byung‐Yeob</au><au>Min, Mi‐Sook</au><au>Lee, Hang</au><au>Lee, Mu‐Yeong</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Genetic diversity and population demography of narrow‐ridged finless porpoises from South Korea on the basis of mitochondrial DNA variation: Implications for its conservation in East Asia</atitle><jtitle>Marine mammal science</jtitle><date>2019-04</date><risdate>2019</risdate><volume>35</volume><issue>2</issue><spage>574</spage><epage>594</epage><pages>574-594</pages><issn>0824-0469</issn><eissn>1748-7692</eissn><abstract>The narrow‐ridged finless porpoise, Neophocaena asiaeorientalis, is a small cetacean inhabiting the coastal waters of Taiwan, East China, Korea, and Japan, and is threatened by anthropogenic pressures. We analyzed the mitochondrial control region of N. asiaeorientalis from Korean waters to better understand the genetic diversity, population structure, and demographic history through comparison with previously reported sequences from Japan and China. The network and phylogenetic analyses illustrated that few common haplotypes were centrally located, and that most of the unique haplotypes were on the edges of the branches. Moreover, the estimates of fixation indices and gene flow revealed significant genetic differentiation among the regions in East Asia. The mismatch distribution suggested a population expansion in the late Pleistocene. We propose that the current genetic variation in N. asiaeorientalis in East Asia was shaped by historical demographic expansion during the late Pleistocene. The N. asiaeorientalis of Korean waters has the highest diversity observed with the sampling available at this time. However, the abundance of N. asiaeorientalis in Korean waters has rapidly declined and the species needs protection from bycatch.</abstract><cop>Hoboken, USA</cop><pub>John Wiley & Sons, Inc</pub><doi>10.1111/mms.12563</doi><tpages>21</tpages><orcidid>https://orcid.org/0000-0003-0264-6289</orcidid></addata></record> |
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subjects | Anthropogenic factors Aquatic mammals Bycatch Coastal waters demographic history Demographics Demography Deoxyribonucleic acid DNA Freshwater mammals Gene flow Genetic diversity Genetic variation Haplotypes Marine mammals Mitochondrial DNA narrow‐ridged finless porpoise Neophocaena asiaeorientalis Phylogeny phylogeography Pleistocene Population genetics Population growth Population structure Porpoises Protected species Threatened species |
title | Genetic diversity and population demography of narrow‐ridged finless porpoises from South Korea on the basis of mitochondrial DNA variation: Implications for its conservation in East Asia |
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