NIRS quantification of lake sediment composition by multiple regression using end-member spectra
Here we develop a novel method for quantifying sediment components, e.g. biogenic silica, organic or mineral matter, from near infrared (NIR) spectra based on fitting by multiple regression of measured spectra for end-member materials. We show that with suitable end-members our new open-source multi...
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description | Here we develop a novel method for quantifying sediment components, e.g. biogenic silica, organic or mineral matter, from near infrared (NIR) spectra based on fitting by multiple regression of measured spectra for end-member materials. We show that with suitable end-members our new open-source multiple regression routine gives excellent simultaneous quantification of the major components of a sediment, the concentrations comparing well with independent methods of quantification. Widely used partial least squares regression approaches rely on large environmental training data sets; our method produces comparable results, but with the advantages of negating the need for a training dataset and with greater simplicity and theoretical robustness. We demonstrate that component NIR spectra are additive, a prerequisite for use of multiple regression to un-mix the compound spectra, and show that a number of environmental materials make suitable end-members for this analysis. We show that spectral mixing is not conservative with respect to mass proportion, but rather to the relative chromatic intensity of contributing sediment components. Concentrations can be calculated using the measured spectra by correction using a chromatic intensity factor, the value of which can be measured independently. We have applied our approach to a postglacial sediment sequence from Loch Grannoch (SW Scotland) and reveal a down-core pattern of varying dominance by biogenic silica, organic and mineral content from the late glacial to present. With isolation and measurement of appropriate end-members this multivariate regression approach to interrogating NIR spectra has utility across a wide range of sedimentary environments and potentially for other spectral analytical methods. |
doi_str_mv | 10.1007/s10933-019-00076-2 |
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We show that with suitable end-members our new open-source multiple regression routine gives excellent simultaneous quantification of the major components of a sediment, the concentrations comparing well with independent methods of quantification. Widely used partial least squares regression approaches rely on large environmental training data sets; our method produces comparable results, but with the advantages of negating the need for a training dataset and with greater simplicity and theoretical robustness. We demonstrate that component NIR spectra are additive, a prerequisite for use of multiple regression to un-mix the compound spectra, and show that a number of environmental materials make suitable end-members for this analysis. We show that spectral mixing is not conservative with respect to mass proportion, but rather to the relative chromatic intensity of contributing sediment components. Concentrations can be calculated using the measured spectra by correction using a chromatic intensity factor, the value of which can be measured independently. We have applied our approach to a postglacial sediment sequence from Loch Grannoch (SW Scotland) and reveal a down-core pattern of varying dominance by biogenic silica, organic and mineral content from the late glacial to present. With isolation and measurement of appropriate end-members this multivariate regression approach to interrogating NIR spectra has utility across a wide range of sedimentary environments and potentially for other spectral analytical methods.</description><identifier>ISSN: 0921-2728</identifier><identifier>EISSN: 1573-0417</identifier><identifier>DOI: 10.1007/s10933-019-00076-2</identifier><language>eng</language><publisher>Dordrecht: Springer Netherlands</publisher><subject>Additives ; Climate Change ; Components ; Earth and Environmental Science ; Earth Sciences ; Freshwater & Marine Ecology ; Geology ; Infrared spectra ; Lake sediments ; Lakes ; Near infrared radiation ; Original Paper ; Paleontology ; Physical Geography ; Regression analysis ; Sediment ; Sediment composition ; Sedimentary environments ; Sedimentology ; Sediments ; Silica ; Silicon dioxide ; Spectra ; Training</subject><ispartof>Journal of paleolimnology, 2019-06, Vol.62 (1), p.73-88</ispartof><rights>The Author(s) 2019</rights><rights>Journal of Paleolimnology is a copyright of Springer, (2019). All Rights Reserved. © 2019. This work is published under http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License.</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c363t-bd94c11acf61fd0315dbd7a793709930e65393f4fc207ed3c4878d3d4391292a3</citedby><cites>FETCH-LOGICAL-c363t-bd94c11acf61fd0315dbd7a793709930e65393f4fc207ed3c4878d3d4391292a3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://link.springer.com/content/pdf/10.1007/s10933-019-00076-2$$EPDF$$P50$$Gspringer$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://link.springer.com/10.1007/s10933-019-00076-2$$EHTML$$P50$$Gspringer$$Hfree_for_read</linktohtml><link.rule.ids>314,780,784,27924,27925,41488,42557,51319</link.rule.ids></links><search><creatorcontrib>Russell, Fiona E.</creatorcontrib><creatorcontrib>Boyle, John F.</creatorcontrib><creatorcontrib>Chiverrell, Richard C.</creatorcontrib><title>NIRS quantification of lake sediment composition by multiple regression using end-member spectra</title><title>Journal of paleolimnology</title><addtitle>J Paleolimnol</addtitle><description>Here we develop a novel method for quantifying sediment components, e.g. biogenic silica, organic or mineral matter, from near infrared (NIR) spectra based on fitting by multiple regression of measured spectra for end-member materials. We show that with suitable end-members our new open-source multiple regression routine gives excellent simultaneous quantification of the major components of a sediment, the concentrations comparing well with independent methods of quantification. Widely used partial least squares regression approaches rely on large environmental training data sets; our method produces comparable results, but with the advantages of negating the need for a training dataset and with greater simplicity and theoretical robustness. We demonstrate that component NIR spectra are additive, a prerequisite for use of multiple regression to un-mix the compound spectra, and show that a number of environmental materials make suitable end-members for this analysis. We show that spectral mixing is not conservative with respect to mass proportion, but rather to the relative chromatic intensity of contributing sediment components. Concentrations can be calculated using the measured spectra by correction using a chromatic intensity factor, the value of which can be measured independently. We have applied our approach to a postglacial sediment sequence from Loch Grannoch (SW Scotland) and reveal a down-core pattern of varying dominance by biogenic silica, organic and mineral content from the late glacial to present. 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Boyle, John F. ; Chiverrell, Richard C.</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c363t-bd94c11acf61fd0315dbd7a793709930e65393f4fc207ed3c4878d3d4391292a3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2019</creationdate><topic>Additives</topic><topic>Climate Change</topic><topic>Components</topic><topic>Earth and Environmental Science</topic><topic>Earth Sciences</topic><topic>Freshwater & Marine Ecology</topic><topic>Geology</topic><topic>Infrared spectra</topic><topic>Lake sediments</topic><topic>Lakes</topic><topic>Near infrared radiation</topic><topic>Original Paper</topic><topic>Paleontology</topic><topic>Physical Geography</topic><topic>Regression analysis</topic><topic>Sediment</topic><topic>Sediment composition</topic><topic>Sedimentary environments</topic><topic>Sedimentology</topic><topic>Sediments</topic><topic>Silica</topic><topic>Silicon dioxide</topic><topic>Spectra</topic><topic>Training</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Russell, Fiona E.</creatorcontrib><creatorcontrib>Boyle, John F.</creatorcontrib><creatorcontrib>Chiverrell, Richard C.</creatorcontrib><collection>SpringerOpen</collection><collection>CrossRef</collection><collection>Aqualine</collection><collection>Bacteriology Abstracts (Microbiology B)</collection><collection>Ecology Abstracts</collection><collection>Industrial and Applied Microbiology Abstracts (Microbiology A)</collection><collection>Virology and AIDS Abstracts</collection><collection>Water Resources Abstracts</collection><collection>Technology Research Database</collection><collection>ProQuest SciTech Collection</collection><collection>ProQuest Natural Science Collection</collection><collection>ProQuest Central UK/Ireland</collection><collection>ProQuest Central Essentials</collection><collection>Biological Science Collection</collection><collection>ProQuest Central</collection><collection>ProQuest Natural Science Collection</collection><collection>Earth, Atmospheric & Aquatic Science Collection</collection><collection>Environmental Sciences and Pollution Management</collection><collection>ProQuest One Community College</collection><collection>ProQuest Central Korea</collection><collection>ASFA: Aquatic Sciences and Fisheries Abstracts</collection><collection>Engineering Research Database</collection><collection>ProQuest Central Student</collection><collection>AIDS and Cancer Research Abstracts</collection><collection>Aquatic Science & Fisheries Abstracts (ASFA) 1: Biological Sciences & Living Resources</collection><collection>Aquatic Science & Fisheries Abstracts (ASFA) 2: Ocean Technology, Policy & Non-Living Resources</collection><collection>SciTech Premium Collection</collection><collection>Aquatic Science & Fisheries Abstracts (ASFA) Professional</collection><collection>ProQuest Biological Science Collection</collection><collection>Algology Mycology and Protozoology Abstracts (Microbiology C)</collection><collection>ProQuest Biological Science Journals</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Earth, Atmospheric & Aquatic Science Database</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><jtitle>Journal of paleolimnology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Russell, Fiona E.</au><au>Boyle, John F.</au><au>Chiverrell, Richard C.</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>NIRS quantification of lake sediment composition by multiple regression using end-member spectra</atitle><jtitle>Journal of paleolimnology</jtitle><stitle>J Paleolimnol</stitle><date>2019-06-01</date><risdate>2019</risdate><volume>62</volume><issue>1</issue><spage>73</spage><epage>88</epage><pages>73-88</pages><issn>0921-2728</issn><eissn>1573-0417</eissn><abstract>Here we develop a novel method for quantifying sediment components, e.g. biogenic silica, organic or mineral matter, from near infrared (NIR) spectra based on fitting by multiple regression of measured spectra for end-member materials. We show that with suitable end-members our new open-source multiple regression routine gives excellent simultaneous quantification of the major components of a sediment, the concentrations comparing well with independent methods of quantification. Widely used partial least squares regression approaches rely on large environmental training data sets; our method produces comparable results, but with the advantages of negating the need for a training dataset and with greater simplicity and theoretical robustness. We demonstrate that component NIR spectra are additive, a prerequisite for use of multiple regression to un-mix the compound spectra, and show that a number of environmental materials make suitable end-members for this analysis. We show that spectral mixing is not conservative with respect to mass proportion, but rather to the relative chromatic intensity of contributing sediment components. 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subjects | Additives Climate Change Components Earth and Environmental Science Earth Sciences Freshwater & Marine Ecology Geology Infrared spectra Lake sediments Lakes Near infrared radiation Original Paper Paleontology Physical Geography Regression analysis Sediment Sediment composition Sedimentary environments Sedimentology Sediments Silica Silicon dioxide Spectra Training |
title | NIRS quantification of lake sediment composition by multiple regression using end-member spectra |
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