Complete mitochondrial genome of Taiwanese loach, Paramisgurnus dabryanus ssp. (Cobitinae)
Taiwanese loach was bred in Formosa and then widely cultivated in China. Because of overfishing and environmental pollution, the number of wild Taiwanese loach has been sharply decreased in these years. Also the taxonomic status of Taiwanese loach is still unclear. In this study, the complete mitoch...
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| description | Taiwanese loach was bred in Formosa and then widely cultivated in China. Because of overfishing and environmental pollution, the number of wild Taiwanese loach has been sharply decreased in these years. Also the taxonomic status of Taiwanese loach is still unclear. In this study, the complete mitochondrial genome of Taiwanese loach was obtained by PCR. The genome is 16,569 bp in length, including 2 ribosomal RNA genes, 13 proteins-coding genes, 22 transfer RNA genes, and a non-coding control region, the gene composition and order of which was similar to most reported from other vertebrates. Sequence analysis showed that the overall base composition is 29.5% for A, 27.5% for T, 26.4% for C, and 16.6% for G. The sequence is a slight A + T bias of 57.0%. By analyzing phylogenetic analysis and BLAST, the similarity to Paramisgurnus was >99%, we dare to speculate that the Taiwanese loach cultivated in China was a subspecies of P. dabryanus. Mitogenome information from this study could be a useful basis for conservation and phylogenetics of Taiwanese loach, P. dabryanus ssp. |
| doi_str_mv | 10.1080/23802359.2018.1450665 |
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(Cobitinae)</title><source>Taylor & Francis Open Access</source><source>DOAJ Directory of Open Access Journals</source><source>Elektronische Zeitschriftenbibliothek - Frei zugängliche E-Journals</source><source>PubMed Central</source><creator>Liang, Xia ; Zhu, Daoyu ; Li, Xiaodong ; Cai, Kejun ; Zhang, Haili ; Zhang, Guosong</creator><creatorcontrib>Liang, Xia ; Zhu, Daoyu ; Li, Xiaodong ; Cai, Kejun ; Zhang, Haili ; Zhang, Guosong</creatorcontrib><description>Taiwanese loach was bred in Formosa and then widely cultivated in China. Because of overfishing and environmental pollution, the number of wild Taiwanese loach has been sharply decreased in these years. Also the taxonomic status of Taiwanese loach is still unclear. In this study, the complete mitochondrial genome of Taiwanese loach was obtained by PCR. The genome is 16,569 bp in length, including 2 ribosomal RNA genes, 13 proteins-coding genes, 22 transfer RNA genes, and a non-coding control region, the gene composition and order of which was similar to most reported from other vertebrates. Sequence analysis showed that the overall base composition is 29.5% for A, 27.5% for T, 26.4% for C, and 16.6% for G. The sequence is a slight A + T bias of 57.0%. By analyzing phylogenetic analysis and BLAST, the similarity to Paramisgurnus was >99%, we dare to speculate that the Taiwanese loach cultivated in China was a subspecies of P. dabryanus. Mitogenome information from this study could be a useful basis for conservation and phylogenetics of Taiwanese loach, P. dabryanus ssp.</description><identifier>ISSN: 2380-2359</identifier><identifier>EISSN: 2380-2359</identifier><identifier>DOI: 10.1080/23802359.2018.1450665</identifier><identifier>PMID: 33474162</identifier><language>eng</language><publisher>England: Taylor & Francis</publisher><subject>Base composition ; conservation ; Genomes ; Mitochondria ; mitogenome ; Mitogenome Announcement ; Non-coding RNA ; Paramisgurnus ; Paramisgurnus dabryanus ; Phylogenetics ; Phylogeny ; rRNA ; Taiwanese loach ; Transfer RNA</subject><ispartof>Mitochondrial DNA. Part B. Resources, 2018-03, Vol.3 (1), p.340-341</ispartof><rights>2018 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. 2018</rights><rights>2018 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group.</rights><rights>2018 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. This work is licensed under the Creative Commons Attribution License http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License.</rights><rights>2018 The Author(s). 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(Cobitinae)</title><title>Mitochondrial DNA. Part B. Resources</title><addtitle>Mitochondrial DNA B Resour</addtitle><description>Taiwanese loach was bred in Formosa and then widely cultivated in China. Because of overfishing and environmental pollution, the number of wild Taiwanese loach has been sharply decreased in these years. Also the taxonomic status of Taiwanese loach is still unclear. In this study, the complete mitochondrial genome of Taiwanese loach was obtained by PCR. The genome is 16,569 bp in length, including 2 ribosomal RNA genes, 13 proteins-coding genes, 22 transfer RNA genes, and a non-coding control region, the gene composition and order of which was similar to most reported from other vertebrates. Sequence analysis showed that the overall base composition is 29.5% for A, 27.5% for T, 26.4% for C, and 16.6% for G. The sequence is a slight A + T bias of 57.0%. By analyzing phylogenetic analysis and BLAST, the similarity to Paramisgurnus was >99%, we dare to speculate that the Taiwanese loach cultivated in China was a subspecies of P. dabryanus. Mitogenome information from this study could be a useful basis for conservation and phylogenetics of Taiwanese loach, P. dabryanus ssp.</description><subject>Base composition</subject><subject>conservation</subject><subject>Genomes</subject><subject>Mitochondria</subject><subject>mitogenome</subject><subject>Mitogenome Announcement</subject><subject>Non-coding RNA</subject><subject>Paramisgurnus</subject><subject>Paramisgurnus dabryanus</subject><subject>Phylogenetics</subject><subject>Phylogeny</subject><subject>rRNA</subject><subject>Taiwanese loach</subject><subject>Transfer RNA</subject><issn>2380-2359</issn><issn>2380-2359</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2018</creationdate><recordtype>article</recordtype><sourceid>0YH</sourceid><sourceid>8G5</sourceid><sourceid>ABUWG</sourceid><sourceid>AFKRA</sourceid><sourceid>AZQEC</sourceid><sourceid>BENPR</sourceid><sourceid>CCPQU</sourceid><sourceid>DWQXO</sourceid><sourceid>GNUQQ</sourceid><sourceid>GUQSH</sourceid><sourceid>M2O</sourceid><sourceid>DOA</sourceid><recordid>eNp9kUtvEzEQxy0EolXpRwCtxAUkEvx-XBAo4lGpEhzKhYs160fiaHcd7A1Vvj27JK3aCyfP8zcz_iP0kuAlwRq_p0xjyoRZUkz0knCBpRRP0PkcX8yJpw_sM3RZ6xZjTCRTyqjn6IwxrjiR9Bz9WuV-14UxNH0as9vkwZcEXbMOQ-5Dk2NzA-kWhlBD02Vwm3fNDyjQp7rel2FfGw9tOcBs1bpbNm9WuU1jGiC8fYGeRehquDy9F-jnl883q2-L6-9fr1afrheOKyUWVBkGTEiuoo9SC4iT44EopShVgIPhFCanZQ6rFggnrRDaEx04CcRpdoGujlyfYWt3JfVQDjZDsv8CuawtlDG5LlgtFJacMkO94NybFlPpo8LaG-NAkon14cja7ds-eBeGsUD3CPo4M6SNXec_VmmMtaQT4PUJUPLvfaij3ebpo6b7LSVGCq4wnVcWxypXcq0lxPsJBNtZYXunsJ0VtieFp75XD9e777rTcyr4eCxIQ8ylh9tcOm9HOHS5xAKDS9Wy_8_4C3Wls_E</recordid><startdate>20180313</startdate><enddate>20180313</enddate><creator>Liang, Xia</creator><creator>Zhu, Daoyu</creator><creator>Li, Xiaodong</creator><creator>Cai, Kejun</creator><creator>Zhang, Haili</creator><creator>Zhang, Guosong</creator><general>Taylor & Francis</general><general>Taylor & Francis Ltd</general><general>Taylor & Francis Group</general><scope>0YH</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7XB</scope><scope>8FD</scope><scope>8FK</scope><scope>8G5</scope><scope>ABUWG</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BENPR</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FR3</scope><scope>GNUQQ</scope><scope>GUQSH</scope><scope>M2O</scope><scope>MBDVC</scope><scope>P64</scope><scope>PIMPY</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>Q9U</scope><scope>RC3</scope><scope>5PM</scope><scope>DOA</scope><orcidid>https://orcid.org/0000-0002-4514-437X</orcidid></search><sort><creationdate>20180313</creationdate><title>Complete mitochondrial genome of Taiwanese loach, Paramisgurnus dabryanus ssp. (Cobitinae)</title><author>Liang, Xia ; Zhu, Daoyu ; Li, Xiaodong ; Cai, Kejun ; Zhang, Haili ; Zhang, Guosong</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c4775-2793a35647fdf685af356da1777227a0e942a777b3c07ba141b558d18e41e1c83</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2018</creationdate><topic>Base composition</topic><topic>conservation</topic><topic>Genomes</topic><topic>Mitochondria</topic><topic>mitogenome</topic><topic>Mitogenome Announcement</topic><topic>Non-coding RNA</topic><topic>Paramisgurnus</topic><topic>Paramisgurnus dabryanus</topic><topic>Phylogenetics</topic><topic>Phylogeny</topic><topic>rRNA</topic><topic>Taiwanese loach</topic><topic>Transfer RNA</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Liang, Xia</creatorcontrib><creatorcontrib>Zhu, Daoyu</creatorcontrib><creatorcontrib>Li, Xiaodong</creatorcontrib><creatorcontrib>Cai, Kejun</creatorcontrib><creatorcontrib>Zhang, Haili</creatorcontrib><creatorcontrib>Zhang, Guosong</creatorcontrib><collection>Taylor & Francis Open Access</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>ProQuest Central (Corporate)</collection><collection>ProQuest Central (purchase pre-March 2016)</collection><collection>Technology Research Database</collection><collection>ProQuest Central (Alumni) (purchase pre-March 2016)</collection><collection>Research Library (Alumni Edition)</collection><collection>ProQuest Central (Alumni Edition)</collection><collection>ProQuest Central UK/Ireland</collection><collection>ProQuest Central Essentials</collection><collection>ProQuest Central</collection><collection>ProQuest One Community College</collection><collection>ProQuest Central Korea</collection><collection>Engineering Research Database</collection><collection>ProQuest Central Student</collection><collection>Research Library Prep</collection><collection>Research Library</collection><collection>Research Library (Corporate)</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Publicly Available Content Database</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>ProQuest Central Basic</collection><collection>Genetics Abstracts</collection><collection>PubMed Central (Full Participant titles)</collection><collection>DOAJ Directory of Open Access Journals</collection><jtitle>Mitochondrial DNA. Part B. Resources</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Liang, Xia</au><au>Zhu, Daoyu</au><au>Li, Xiaodong</au><au>Cai, Kejun</au><au>Zhang, Haili</au><au>Zhang, Guosong</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Complete mitochondrial genome of Taiwanese loach, Paramisgurnus dabryanus ssp. (Cobitinae)</atitle><jtitle>Mitochondrial DNA. Part B. Resources</jtitle><addtitle>Mitochondrial DNA B Resour</addtitle><date>2018-03-13</date><risdate>2018</risdate><volume>3</volume><issue>1</issue><spage>340</spage><epage>341</epage><pages>340-341</pages><issn>2380-2359</issn><eissn>2380-2359</eissn><abstract>Taiwanese loach was bred in Formosa and then widely cultivated in China. Because of overfishing and environmental pollution, the number of wild Taiwanese loach has been sharply decreased in these years. Also the taxonomic status of Taiwanese loach is still unclear. In this study, the complete mitochondrial genome of Taiwanese loach was obtained by PCR. The genome is 16,569 bp in length, including 2 ribosomal RNA genes, 13 proteins-coding genes, 22 transfer RNA genes, and a non-coding control region, the gene composition and order of which was similar to most reported from other vertebrates. Sequence analysis showed that the overall base composition is 29.5% for A, 27.5% for T, 26.4% for C, and 16.6% for G. The sequence is a slight A + T bias of 57.0%. By analyzing phylogenetic analysis and BLAST, the similarity to Paramisgurnus was >99%, we dare to speculate that the Taiwanese loach cultivated in China was a subspecies of P. dabryanus. Mitogenome information from this study could be a useful basis for conservation and phylogenetics of Taiwanese loach, P. dabryanus ssp.</abstract><cop>England</cop><pub>Taylor & Francis</pub><pmid>33474162</pmid><doi>10.1080/23802359.2018.1450665</doi><tpages>2</tpages><orcidid>https://orcid.org/0000-0002-4514-437X</orcidid><oa>free_for_read</oa></addata></record> |
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| subjects | Base composition conservation Genomes Mitochondria mitogenome Mitogenome Announcement Non-coding RNA Paramisgurnus Paramisgurnus dabryanus Phylogenetics Phylogeny rRNA Taiwanese loach Transfer RNA |
| title | Complete mitochondrial genome of Taiwanese loach, Paramisgurnus dabryanus ssp. (Cobitinae) |
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