Genetic diversity of Fusarium oxysporum f. sp. spinaciae in Japan based on phylogenetic analyses of rDNA-IGS and MAT1 sequences
Twenty-eight isolates of Fusarium oxysporum f. sp. spinaciae (FOS; the causal agent of spinach wilt) collected from Japan were assessed for mating type and subjected to phylogenetic analysis. Mating type analysis revealed all isolates to be MAT1-2, suggesting that there is no sexual recombination wi...
Gespeichert in:
| Veröffentlicht in: | Journal of general plant pathology : JGPP 2007-10, Vol.73 (5), p.353-359 |
|---|---|
| Hauptverfasser: | , , , , |
| Format: | Artikel |
| Sprache: | eng |
| Schlagworte: | |
| Online-Zugang: | Volltext |
| Tags: |
Tag hinzufügen
Keine Tags, Fügen Sie den ersten Tag hinzu!
|
| container_end_page | 359 |
|---|---|
| container_issue | 5 |
| container_start_page | 353 |
| container_title | Journal of general plant pathology : JGPP |
| container_volume | 73 |
| creator | Kawabe, M.(National Inst. for Agro-Environmental Sciences, Tsukuba, Ibaraki (Japan)) Katsube, K Yoshida, T Arie, T Tsuchiya, K |
| description | Twenty-eight isolates of Fusarium oxysporum f. sp. spinaciae (FOS; the causal agent of spinach wilt) collected from Japan were assessed for mating type and subjected to phylogenetic analysis. Mating type analysis revealed all isolates to be MAT1-2, suggesting that there is no sexual recombination within the population. Phylogenetic analyses based on nucleotide sequences of the ribosomal DNA intergenic spacer (IGS) and the mating type locus (MAT1) suggested that FOS is polyphyletic. The cluster analysis based on IGS showed four phylogenetic groups (S1-S4) among the isolates. Two distinct lineages, S1 and S3, included FOS isolates both of the vegetative compatibility group (VCG) types, 0330 and 0331, demonstrating that VCG differentiation in FOS may not necessarily reflect the phylogenetic relationships based on IGS and MAT1-2-1. [PUBLICATION ABSTRACT] |
| doi_str_mv | 10.1007/s10327-007-0036-6 |
| format | Article |
| fullrecord | <record><control><sourceid>proquest_cross</sourceid><recordid>TN_cdi_proquest_journals_218652943</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><sourcerecordid>1341327471</sourcerecordid><originalsourceid>FETCH-LOGICAL-c238t-109adc3d267fd670fced893a62f1237238b52b68af406df7af9b30b7e60468b3</originalsourceid><addsrcrecordid>eNotUMtOwzAQjBBIlMcHcECyuKes7cROjhWPAioPiR64WU5ig6sSB2-CyIlfx1E5jHa0mpldTZKcUZhTAHmJFDiTaaQRXKRiL5lRQSGVvHzbj5xnecoEh8PkCHEDwCiX-Sz5XZrW9K4mjfs2AV0_Em_J7YA6uOGT-J8ROx8is3OC3QTX6tppQ1xLHnSnW1JpNA3xLek-xq1__8_Trd6OaHCKC9dPi_R--RqXDXlcrClB8zWYtjZ4khxYvUVz-j-Pk_XtzfrqLl09L--vFqu0ZrzoUwqlbmreMCFtIyTY2jRFybVgljIuo6bKWSUKbTMQjZXalhWHShoBmSgqfpxc7GK74ONl7NXGDyG-iIrRQuSszHgU0Z2oDh4xGKu64D51GBUFNbWsdi2riU4tKxE95zuP1V7p9-BQPbwwgAIAck75HzxbeKY</addsrcrecordid><sourcetype>Aggregation Database</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype><pqid>218652943</pqid></control><display><type>article</type><title>Genetic diversity of Fusarium oxysporum f. sp. spinaciae in Japan based on phylogenetic analyses of rDNA-IGS and MAT1 sequences</title><source>SpringerNature Journals</source><creator>Kawabe, M.(National Inst. for Agro-Environmental Sciences, Tsukuba, Ibaraki (Japan)) ; Katsube, K ; Yoshida, T ; Arie, T ; Tsuchiya, K</creator><creatorcontrib>Kawabe, M.(National Inst. for Agro-Environmental Sciences, Tsukuba, Ibaraki (Japan)) ; Katsube, K ; Yoshida, T ; Arie, T ; Tsuchiya, K</creatorcontrib><description>Twenty-eight isolates of Fusarium oxysporum f. sp. spinaciae (FOS; the causal agent of spinach wilt) collected from Japan were assessed for mating type and subjected to phylogenetic analysis. Mating type analysis revealed all isolates to be MAT1-2, suggesting that there is no sexual recombination within the population. Phylogenetic analyses based on nucleotide sequences of the ribosomal DNA intergenic spacer (IGS) and the mating type locus (MAT1) suggested that FOS is polyphyletic. The cluster analysis based on IGS showed four phylogenetic groups (S1-S4) among the isolates. Two distinct lineages, S1 and S3, included FOS isolates both of the vegetative compatibility group (VCG) types, 0330 and 0331, demonstrating that VCG differentiation in FOS may not necessarily reflect the phylogenetic relationships based on IGS and MAT1-2-1. [PUBLICATION ABSTRACT]</description><identifier>ISSN: 1345-2630</identifier><identifier>EISSN: 1610-739X</identifier><identifier>DOI: 10.1007/s10327-007-0036-6</identifier><identifier>CODEN: JGPPBQ</identifier><language>eng</language><publisher>Tokyo: Springer Nature B.V</publisher><subject>ADN ; BIODIVERSIDAD ; BIODIVERSITE ; BIODIVERSITY ; DNA ; FILOGENIA ; Fungi ; FUSARIUM OXYSPORUM ; Gene loci ; Genetic diversity ; GENETIC VARIATION ; JAPAN ; JAPON ; MATING SYSTEMS ; METHODE D'ACCOUPLEMENT ; NUCLEOTIDE SEQUENCE ; PHYLOGENIE ; PHYLOGENY ; Plant pathology ; Ribosomal DNA ; RIBOSOMAS ; RIBOSOME ; RIBOSOMES ; SECUENCIA NUCLEOTIDICA ; SEQUENCE NUCLEOTIDIQUE ; SISTEMAS DE APAREAMIENTO ; SPINACIA ; VARIACION GENETICA ; VARIATION GENETIQUE</subject><ispartof>Journal of general plant pathology : JGPP, 2007-10, Vol.73 (5), p.353-359</ispartof><rights>The Phytopathological Society of Japan and Springer 2007</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c238t-109adc3d267fd670fced893a62f1237238b52b68af406df7af9b30b7e60468b3</citedby><cites>FETCH-LOGICAL-c238t-109adc3d267fd670fced893a62f1237238b52b68af406df7af9b30b7e60468b3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>314,780,784,27924,27925</link.rule.ids></links><search><creatorcontrib>Kawabe, M.(National Inst. for Agro-Environmental Sciences, Tsukuba, Ibaraki (Japan))</creatorcontrib><creatorcontrib>Katsube, K</creatorcontrib><creatorcontrib>Yoshida, T</creatorcontrib><creatorcontrib>Arie, T</creatorcontrib><creatorcontrib>Tsuchiya, K</creatorcontrib><title>Genetic diversity of Fusarium oxysporum f. sp. spinaciae in Japan based on phylogenetic analyses of rDNA-IGS and MAT1 sequences</title><title>Journal of general plant pathology : JGPP</title><description>Twenty-eight isolates of Fusarium oxysporum f. sp. spinaciae (FOS; the causal agent of spinach wilt) collected from Japan were assessed for mating type and subjected to phylogenetic analysis. Mating type analysis revealed all isolates to be MAT1-2, suggesting that there is no sexual recombination within the population. Phylogenetic analyses based on nucleotide sequences of the ribosomal DNA intergenic spacer (IGS) and the mating type locus (MAT1) suggested that FOS is polyphyletic. The cluster analysis based on IGS showed four phylogenetic groups (S1-S4) among the isolates. Two distinct lineages, S1 and S3, included FOS isolates both of the vegetative compatibility group (VCG) types, 0330 and 0331, demonstrating that VCG differentiation in FOS may not necessarily reflect the phylogenetic relationships based on IGS and MAT1-2-1. [PUBLICATION ABSTRACT]</description><subject>ADN</subject><subject>BIODIVERSIDAD</subject><subject>BIODIVERSITE</subject><subject>BIODIVERSITY</subject><subject>DNA</subject><subject>FILOGENIA</subject><subject>Fungi</subject><subject>FUSARIUM OXYSPORUM</subject><subject>Gene loci</subject><subject>Genetic diversity</subject><subject>GENETIC VARIATION</subject><subject>JAPAN</subject><subject>JAPON</subject><subject>MATING SYSTEMS</subject><subject>METHODE D'ACCOUPLEMENT</subject><subject>NUCLEOTIDE SEQUENCE</subject><subject>PHYLOGENIE</subject><subject>PHYLOGENY</subject><subject>Plant pathology</subject><subject>Ribosomal DNA</subject><subject>RIBOSOMAS</subject><subject>RIBOSOME</subject><subject>RIBOSOMES</subject><subject>SECUENCIA NUCLEOTIDICA</subject><subject>SEQUENCE NUCLEOTIDIQUE</subject><subject>SISTEMAS DE APAREAMIENTO</subject><subject>SPINACIA</subject><subject>VARIACION GENETICA</subject><subject>VARIATION GENETIQUE</subject><issn>1345-2630</issn><issn>1610-739X</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2007</creationdate><recordtype>article</recordtype><sourceid>8G5</sourceid><sourceid>ABUWG</sourceid><sourceid>AFKRA</sourceid><sourceid>AZQEC</sourceid><sourceid>BENPR</sourceid><sourceid>CCPQU</sourceid><sourceid>DWQXO</sourceid><sourceid>GNUQQ</sourceid><sourceid>GUQSH</sourceid><sourceid>M2O</sourceid><recordid>eNotUMtOwzAQjBBIlMcHcECyuKes7cROjhWPAioPiR64WU5ig6sSB2-CyIlfx1E5jHa0mpldTZKcUZhTAHmJFDiTaaQRXKRiL5lRQSGVvHzbj5xnecoEh8PkCHEDwCiX-Sz5XZrW9K4mjfs2AV0_Em_J7YA6uOGT-J8ROx8is3OC3QTX6tppQ1xLHnSnW1JpNA3xLek-xq1__8_Trd6OaHCKC9dPi_R--RqXDXlcrClB8zWYtjZ4khxYvUVz-j-Pk_XtzfrqLl09L--vFqu0ZrzoUwqlbmreMCFtIyTY2jRFybVgljIuo6bKWSUKbTMQjZXalhWHShoBmSgqfpxc7GK74ONl7NXGDyG-iIrRQuSszHgU0Z2oDh4xGKu64D51GBUFNbWsdi2riU4tKxE95zuP1V7p9-BQPbwwgAIAck75HzxbeKY</recordid><startdate>200710</startdate><enddate>200710</enddate><creator>Kawabe, M.(National Inst. for Agro-Environmental Sciences, Tsukuba, Ibaraki (Japan))</creator><creator>Katsube, K</creator><creator>Yoshida, T</creator><creator>Arie, T</creator><creator>Tsuchiya, K</creator><general>Springer Nature B.V</general><scope>FBQ</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7QL</scope><scope>7T7</scope><scope>7U9</scope><scope>7X2</scope><scope>7X7</scope><scope>7XB</scope><scope>88A</scope><scope>8AO</scope><scope>8FD</scope><scope>8FE</scope><scope>8FH</scope><scope>8FI</scope><scope>8FJ</scope><scope>8FK</scope><scope>8G5</scope><scope>ABUWG</scope><scope>AFKRA</scope><scope>ATCPS</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BHPHI</scope><scope>BKSAR</scope><scope>C1K</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FR3</scope><scope>FYUFA</scope><scope>GHDGH</scope><scope>GNUQQ</scope><scope>GUQSH</scope><scope>H94</scope><scope>HCIFZ</scope><scope>K9.</scope><scope>LK8</scope><scope>M0K</scope><scope>M0S</scope><scope>M2O</scope><scope>M7N</scope><scope>M7P</scope><scope>MBDVC</scope><scope>P64</scope><scope>PCBAR</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>Q9U</scope></search><sort><creationdate>200710</creationdate><title>Genetic diversity of Fusarium oxysporum f. sp. spinaciae in Japan based on phylogenetic analyses of rDNA-IGS and MAT1 sequences</title><author>Kawabe, M.(National Inst. for Agro-Environmental Sciences, Tsukuba, Ibaraki (Japan)) ; Katsube, K ; Yoshida, T ; Arie, T ; Tsuchiya, K</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c238t-109adc3d267fd670fced893a62f1237238b52b68af406df7af9b30b7e60468b3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2007</creationdate><topic>ADN</topic><topic>BIODIVERSIDAD</topic><topic>BIODIVERSITE</topic><topic>BIODIVERSITY</topic><topic>DNA</topic><topic>FILOGENIA</topic><topic>Fungi</topic><topic>FUSARIUM OXYSPORUM</topic><topic>Gene loci</topic><topic>Genetic diversity</topic><topic>GENETIC VARIATION</topic><topic>JAPAN</topic><topic>JAPON</topic><topic>MATING SYSTEMS</topic><topic>METHODE D'ACCOUPLEMENT</topic><topic>NUCLEOTIDE SEQUENCE</topic><topic>PHYLOGENIE</topic><topic>PHYLOGENY</topic><topic>Plant pathology</topic><topic>Ribosomal DNA</topic><topic>RIBOSOMAS</topic><topic>RIBOSOME</topic><topic>RIBOSOMES</topic><topic>SECUENCIA NUCLEOTIDICA</topic><topic>SEQUENCE NUCLEOTIDIQUE</topic><topic>SISTEMAS DE APAREAMIENTO</topic><topic>SPINACIA</topic><topic>VARIACION GENETICA</topic><topic>VARIATION GENETIQUE</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Kawabe, M.(National Inst. for Agro-Environmental Sciences, Tsukuba, Ibaraki (Japan))</creatorcontrib><creatorcontrib>Katsube, K</creatorcontrib><creatorcontrib>Yoshida, T</creatorcontrib><creatorcontrib>Arie, T</creatorcontrib><creatorcontrib>Tsuchiya, K</creatorcontrib><collection>AGRIS</collection><collection>CrossRef</collection><collection>ProQuest Central (Corporate)</collection><collection>Bacteriology Abstracts (Microbiology B)</collection><collection>Industrial and Applied Microbiology Abstracts (Microbiology A)</collection><collection>Virology and AIDS Abstracts</collection><collection>Agricultural Science Collection</collection><collection>Health & Medical Collection</collection><collection>ProQuest Central (purchase pre-March 2016)</collection><collection>Biology Database (Alumni Edition)</collection><collection>ProQuest Pharma Collection</collection><collection>Technology Research Database</collection><collection>ProQuest SciTech Collection</collection><collection>ProQuest Natural Science Collection</collection><collection>Hospital Premium Collection</collection><collection>Hospital Premium Collection (Alumni Edition)</collection><collection>ProQuest Central (Alumni) (purchase pre-March 2016)</collection><collection>Research Library (Alumni Edition)</collection><collection>ProQuest Central (Alumni Edition)</collection><collection>ProQuest Central UK/Ireland</collection><collection>Agricultural & Environmental Science Collection</collection><collection>ProQuest Central Essentials</collection><collection>Biological Science Collection</collection><collection>ProQuest Central</collection><collection>Natural Science Collection</collection><collection>Earth, Atmospheric & Aquatic Science Collection</collection><collection>Environmental Sciences and Pollution Management</collection><collection>ProQuest One Community College</collection><collection>ProQuest Central Korea</collection><collection>Engineering Research Database</collection><collection>Health Research Premium Collection</collection><collection>Health Research Premium Collection (Alumni)</collection><collection>ProQuest Central Student</collection><collection>Research Library Prep</collection><collection>AIDS and Cancer Research Abstracts</collection><collection>SciTech Premium Collection</collection><collection>ProQuest Health & Medical Complete (Alumni)</collection><collection>ProQuest Biological Science Collection</collection><collection>Agricultural Science Database</collection><collection>Health & Medical Collection (Alumni Edition)</collection><collection>Research Library</collection><collection>Algology Mycology and Protozoology Abstracts (Microbiology C)</collection><collection>Biological Science Database</collection><collection>Research Library (Corporate)</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Earth, Atmospheric & Aquatic Science Database</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>ProQuest Central Basic</collection><jtitle>Journal of general plant pathology : JGPP</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Kawabe, M.(National Inst. for Agro-Environmental Sciences, Tsukuba, Ibaraki (Japan))</au><au>Katsube, K</au><au>Yoshida, T</au><au>Arie, T</au><au>Tsuchiya, K</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Genetic diversity of Fusarium oxysporum f. sp. spinaciae in Japan based on phylogenetic analyses of rDNA-IGS and MAT1 sequences</atitle><jtitle>Journal of general plant pathology : JGPP</jtitle><date>2007-10</date><risdate>2007</risdate><volume>73</volume><issue>5</issue><spage>353</spage><epage>359</epage><pages>353-359</pages><issn>1345-2630</issn><eissn>1610-739X</eissn><coden>JGPPBQ</coden><abstract>Twenty-eight isolates of Fusarium oxysporum f. sp. spinaciae (FOS; the causal agent of spinach wilt) collected from Japan were assessed for mating type and subjected to phylogenetic analysis. Mating type analysis revealed all isolates to be MAT1-2, suggesting that there is no sexual recombination within the population. Phylogenetic analyses based on nucleotide sequences of the ribosomal DNA intergenic spacer (IGS) and the mating type locus (MAT1) suggested that FOS is polyphyletic. The cluster analysis based on IGS showed four phylogenetic groups (S1-S4) among the isolates. Two distinct lineages, S1 and S3, included FOS isolates both of the vegetative compatibility group (VCG) types, 0330 and 0331, demonstrating that VCG differentiation in FOS may not necessarily reflect the phylogenetic relationships based on IGS and MAT1-2-1. [PUBLICATION ABSTRACT]</abstract><cop>Tokyo</cop><pub>Springer Nature B.V</pub><doi>10.1007/s10327-007-0036-6</doi><tpages>7</tpages></addata></record> |
| fulltext | fulltext |
| identifier | ISSN: 1345-2630 |
| ispartof | Journal of general plant pathology : JGPP, 2007-10, Vol.73 (5), p.353-359 |
| issn | 1345-2630 1610-739X |
| language | eng |
| recordid | cdi_proquest_journals_218652943 |
| source | SpringerNature Journals |
| subjects | ADN BIODIVERSIDAD BIODIVERSITE BIODIVERSITY DNA FILOGENIA Fungi FUSARIUM OXYSPORUM Gene loci Genetic diversity GENETIC VARIATION JAPAN JAPON MATING SYSTEMS METHODE D'ACCOUPLEMENT NUCLEOTIDE SEQUENCE PHYLOGENIE PHYLOGENY Plant pathology Ribosomal DNA RIBOSOMAS RIBOSOME RIBOSOMES SECUENCIA NUCLEOTIDICA SEQUENCE NUCLEOTIDIQUE SISTEMAS DE APAREAMIENTO SPINACIA VARIACION GENETICA VARIATION GENETIQUE |
| title | Genetic diversity of Fusarium oxysporum f. sp. spinaciae in Japan based on phylogenetic analyses of rDNA-IGS and MAT1 sequences |
| url | https://sfx.bib-bvb.de/sfx_tum?ctx_ver=Z39.88-2004&ctx_enc=info:ofi/enc:UTF-8&ctx_tim=2025-01-03T00%3A41%3A44IST&url_ver=Z39.88-2004&url_ctx_fmt=infofi/fmt:kev:mtx:ctx&rfr_id=info:sid/primo.exlibrisgroup.com:primo3-Article-proquest_cross&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.genre=article&rft.atitle=Genetic%20diversity%20of%20Fusarium%20oxysporum%20f.%20sp.%20spinaciae%20in%20Japan%20based%20on%20phylogenetic%20analyses%20of%20rDNA-IGS%20and%20MAT1%20sequences&rft.jtitle=Journal%20of%20general%20plant%20pathology%20:%20JGPP&rft.au=Kawabe,%20M.(National%20Inst.%20for%20Agro-Environmental%20Sciences,%20Tsukuba,%20Ibaraki%20(Japan))&rft.date=2007-10&rft.volume=73&rft.issue=5&rft.spage=353&rft.epage=359&rft.pages=353-359&rft.issn=1345-2630&rft.eissn=1610-739X&rft.coden=JGPPBQ&rft_id=info:doi/10.1007/s10327-007-0036-6&rft_dat=%3Cproquest_cross%3E1341327471%3C/proquest_cross%3E%3Curl%3E%3C/url%3E&disable_directlink=true&sfx.directlink=off&sfx.report_link=0&rft_id=info:oai/&rft_pqid=218652943&rft_id=info:pmid/&rfr_iscdi=true |