A variable-temperature X-ray diffraction and theoretical study of conformational polymorphism in a complex organic molecule (DTC)
Two conformational crystal polymorphs of 3-diethylamino-4-(4-methoxyphenyl)-1,1-dioxo-4 H -1λ 6 ,2-thiazete-4-carbonitrile (DTC) have been analyzed in the 100 K-room temperature range by single crystal X-ray diffraction and high quality DFT calculations. DTC has strongly polar as well as aliphatic s...
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creator | Gionda, Andrea Macetti, Giovanni Loconte, Laura Rizzato, Silvia Orlando, Ahmed M Gatti, Carlo Lo Presti, Leonardo |
description | Two conformational crystal polymorphs of 3-diethylamino-4-(4-methoxyphenyl)-1,1-dioxo-4
H
-1λ
6
,2-thiazete-4-carbonitrile (DTC) have been analyzed in the 100 K-room temperature range by single crystal X-ray diffraction and high quality DFT calculations. DTC has strongly polar as well as aliphatic substituents but no hydrogen bonding groups, and thus qualifies as a test molecule for the relative importance of electrostatic
vs.
dispersion-repulsion terms. The two polymorphs have the same
P
2
1
/
n
space group and differ by a flipping of the -OCH
3
group, the two conformations being almost equi-energetic and separated by a low barrier. The system is monotropic in the observed temperature range with nearly identical thermal expansion coefficients and energy-temperature slopes, one phase consistently predicted to be more stable in agreement with the relative ease of appearance. Energy decompositions show that the electrostatic term is dominant and stabilizes with decreasing temperature. Dispersion and repulsion show the expected behavior, the former becoming more stabilizing at lower temperature in contrast with increasing repulsion at higher density. Absolute values and trends are very similar in the two phases, explaining the small total energy difference. Geometrical analyses of intermolecular contacts using fingerprint plots, as well as the study of molecular dipole moments as a function of
T
in the framework of the Quantum Theory of Atoms in Molecules, reveal more details of phase stability.
A small conformational change in the asymmetric unit has a significant effect on how non-covalent interactions determine (i) the crystal packing and (ii) the effect of
T
on the relative balance of electrostatics and dispersion-repulsions. |
doi_str_mv | 10.1039/c8ra08063a |
format | Article |
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H
-1λ
6
,2-thiazete-4-carbonitrile (DTC) have been analyzed in the 100 K-room temperature range by single crystal X-ray diffraction and high quality DFT calculations. DTC has strongly polar as well as aliphatic substituents but no hydrogen bonding groups, and thus qualifies as a test molecule for the relative importance of electrostatic
vs.
dispersion-repulsion terms. The two polymorphs have the same
P
2
1
/
n
space group and differ by a flipping of the -OCH
3
group, the two conformations being almost equi-energetic and separated by a low barrier. The system is monotropic in the observed temperature range with nearly identical thermal expansion coefficients and energy-temperature slopes, one phase consistently predicted to be more stable in agreement with the relative ease of appearance. Energy decompositions show that the electrostatic term is dominant and stabilizes with decreasing temperature. Dispersion and repulsion show the expected behavior, the former becoming more stabilizing at lower temperature in contrast with increasing repulsion at higher density. Absolute values and trends are very similar in the two phases, explaining the small total energy difference. Geometrical analyses of intermolecular contacts using fingerprint plots, as well as the study of molecular dipole moments as a function of
T
in the framework of the Quantum Theory of Atoms in Molecules, reveal more details of phase stability.
A small conformational change in the asymmetric unit has a significant effect on how non-covalent interactions determine (i) the crystal packing and (ii) the effect of
T
on the relative balance of electrostatics and dispersion-repulsions.</description><identifier>ISSN: 2046-2069</identifier><identifier>EISSN: 2046-2069</identifier><identifier>DOI: 10.1039/c8ra08063a</identifier><identifier>PMID: 35559076</identifier><language>eng</language><publisher>England: Royal Society of Chemistry</publisher><subject>Aliphatic compounds ; Bonding strength ; Chemistry ; Crystal lattices ; Crystallography ; Decomposition ; Dipole moments ; Dispersion ; Eigenvalues ; Hydrogen bonding ; Libration ; Mathematical analysis ; Phase stability ; Polymorphism ; Quantum theory ; Rigid structures ; Rigid-body dynamics ; Single crystals ; Tensors ; Thermal expansion ; Translations ; X-ray diffraction</subject><ispartof>RSC advances, 2018-11, Vol.8 (67), p.38445-38454</ispartof><rights>This journal is © The Royal Society of Chemistry.</rights><rights>Copyright Royal Society of Chemistry 2018</rights><rights>This journal is © The Royal Society of Chemistry 2018 The Royal Society of Chemistry</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c428t-50058944e4789914d6f4d76a9805d7f34571645cac4f850807d88fa6d0d5eb993</citedby><cites>FETCH-LOGICAL-c428t-50058944e4789914d6f4d76a9805d7f34571645cac4f850807d88fa6d0d5eb993</cites><orcidid>0000-0002-0047-1596 ; 0000-0001-6361-477X ; 0000-0001-9893-0238</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC9090575/pdf/$$EPDF$$P50$$Gpubmedcentral$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC9090575/$$EHTML$$P50$$Gpubmedcentral$$Hfree_for_read</linktohtml><link.rule.ids>230,314,723,776,780,860,881,27901,27902,53766,53768</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/35559076$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Gionda, Andrea</creatorcontrib><creatorcontrib>Macetti, Giovanni</creatorcontrib><creatorcontrib>Loconte, Laura</creatorcontrib><creatorcontrib>Rizzato, Silvia</creatorcontrib><creatorcontrib>Orlando, Ahmed M</creatorcontrib><creatorcontrib>Gatti, Carlo</creatorcontrib><creatorcontrib>Lo Presti, Leonardo</creatorcontrib><title>A variable-temperature X-ray diffraction and theoretical study of conformational polymorphism in a complex organic molecule (DTC)</title><title>RSC advances</title><addtitle>RSC Adv</addtitle><description>Two conformational crystal polymorphs of 3-diethylamino-4-(4-methoxyphenyl)-1,1-dioxo-4
H
-1λ
6
,2-thiazete-4-carbonitrile (DTC) have been analyzed in the 100 K-room temperature range by single crystal X-ray diffraction and high quality DFT calculations. DTC has strongly polar as well as aliphatic substituents but no hydrogen bonding groups, and thus qualifies as a test molecule for the relative importance of electrostatic
vs.
dispersion-repulsion terms. The two polymorphs have the same
P
2
1
/
n
space group and differ by a flipping of the -OCH
3
group, the two conformations being almost equi-energetic and separated by a low barrier. The system is monotropic in the observed temperature range with nearly identical thermal expansion coefficients and energy-temperature slopes, one phase consistently predicted to be more stable in agreement with the relative ease of appearance. Energy decompositions show that the electrostatic term is dominant and stabilizes with decreasing temperature. Dispersion and repulsion show the expected behavior, the former becoming more stabilizing at lower temperature in contrast with increasing repulsion at higher density. Absolute values and trends are very similar in the two phases, explaining the small total energy difference. Geometrical analyses of intermolecular contacts using fingerprint plots, as well as the study of molecular dipole moments as a function of
T
in the framework of the Quantum Theory of Atoms in Molecules, reveal more details of phase stability.
A small conformational change in the asymmetric unit has a significant effect on how non-covalent interactions determine (i) the crystal packing and (ii) the effect of
T
on the relative balance of electrostatics and dispersion-repulsions.</description><subject>Aliphatic compounds</subject><subject>Bonding strength</subject><subject>Chemistry</subject><subject>Crystal lattices</subject><subject>Crystallography</subject><subject>Decomposition</subject><subject>Dipole moments</subject><subject>Dispersion</subject><subject>Eigenvalues</subject><subject>Hydrogen bonding</subject><subject>Libration</subject><subject>Mathematical analysis</subject><subject>Phase stability</subject><subject>Polymorphism</subject><subject>Quantum theory</subject><subject>Rigid structures</subject><subject>Rigid-body dynamics</subject><subject>Single crystals</subject><subject>Tensors</subject><subject>Thermal expansion</subject><subject>Translations</subject><subject>X-ray diffraction</subject><issn>2046-2069</issn><issn>2046-2069</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2018</creationdate><recordtype>article</recordtype><recordid>eNpd0s1rFDEUAPAgii1tL96VgJcqjGYmH5NcCstaW6EgSAVvw9t8dFMykzGZKe7R_7xZt12ruSTk_fJ4vBeEXtXkQ02o-qhlAiKJoPAMHTaEiaohQj1_cj5AJznfkrIErxtRv0QHlHOuSCsO0e8FvoPkYRVsNdl-tAmmOVn8o0qwwcY7l0BPPg4YBoOntY3JTl5DwHmazQZHh3UcXEw9bFW5H2PY9DGNa5977Mu7Avox2F84phsYvMZ9DFbPweLTT9fLd8fohYOQ7cnDfoS-fz6_Xl5WV18vviwXV5VmjZwqTgiXijHLWqlUzYxwzLQClCTctI4y3taCcQ2aOclLR1ojpQNhiOF2pRQ9Qme7vOO86q3RdpgShG5Mvoe06SL47t_I4NfdTbzrFFGEt7wkOH1IkOLP2eap633WNgQYbJxz1wjBJKFSbenb_-htnFPpTlE1FVxKUtOi3u-UTjHnZN2-mJp02-F2S_lt8We4i4LfPC1_Tx9HWcDrHUhZ76N_fwe9B-2pqlw</recordid><startdate>20181114</startdate><enddate>20181114</enddate><creator>Gionda, Andrea</creator><creator>Macetti, Giovanni</creator><creator>Loconte, Laura</creator><creator>Rizzato, Silvia</creator><creator>Orlando, Ahmed M</creator><creator>Gatti, Carlo</creator><creator>Lo Presti, Leonardo</creator><general>Royal Society of Chemistry</general><general>The Royal Society of Chemistry</general><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7SR</scope><scope>8BQ</scope><scope>8FD</scope><scope>JG9</scope><scope>7X8</scope><scope>5PM</scope><orcidid>https://orcid.org/0000-0002-0047-1596</orcidid><orcidid>https://orcid.org/0000-0001-6361-477X</orcidid><orcidid>https://orcid.org/0000-0001-9893-0238</orcidid></search><sort><creationdate>20181114</creationdate><title>A variable-temperature X-ray diffraction and theoretical study of conformational polymorphism in a complex organic molecule (DTC)</title><author>Gionda, Andrea ; Macetti, Giovanni ; Loconte, Laura ; Rizzato, Silvia ; Orlando, Ahmed M ; Gatti, Carlo ; Lo Presti, Leonardo</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c428t-50058944e4789914d6f4d76a9805d7f34571645cac4f850807d88fa6d0d5eb993</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2018</creationdate><topic>Aliphatic compounds</topic><topic>Bonding strength</topic><topic>Chemistry</topic><topic>Crystal lattices</topic><topic>Crystallography</topic><topic>Decomposition</topic><topic>Dipole moments</topic><topic>Dispersion</topic><topic>Eigenvalues</topic><topic>Hydrogen bonding</topic><topic>Libration</topic><topic>Mathematical analysis</topic><topic>Phase stability</topic><topic>Polymorphism</topic><topic>Quantum theory</topic><topic>Rigid structures</topic><topic>Rigid-body dynamics</topic><topic>Single crystals</topic><topic>Tensors</topic><topic>Thermal expansion</topic><topic>Translations</topic><topic>X-ray diffraction</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Gionda, Andrea</creatorcontrib><creatorcontrib>Macetti, Giovanni</creatorcontrib><creatorcontrib>Loconte, Laura</creatorcontrib><creatorcontrib>Rizzato, Silvia</creatorcontrib><creatorcontrib>Orlando, Ahmed M</creatorcontrib><creatorcontrib>Gatti, Carlo</creatorcontrib><creatorcontrib>Lo Presti, Leonardo</creatorcontrib><collection>PubMed</collection><collection>CrossRef</collection><collection>Engineered Materials Abstracts</collection><collection>METADEX</collection><collection>Technology Research Database</collection><collection>Materials Research Database</collection><collection>MEDLINE - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><jtitle>RSC advances</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Gionda, Andrea</au><au>Macetti, Giovanni</au><au>Loconte, Laura</au><au>Rizzato, Silvia</au><au>Orlando, Ahmed M</au><au>Gatti, Carlo</au><au>Lo Presti, Leonardo</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>A variable-temperature X-ray diffraction and theoretical study of conformational polymorphism in a complex organic molecule (DTC)</atitle><jtitle>RSC advances</jtitle><addtitle>RSC Adv</addtitle><date>2018-11-14</date><risdate>2018</risdate><volume>8</volume><issue>67</issue><spage>38445</spage><epage>38454</epage><pages>38445-38454</pages><issn>2046-2069</issn><eissn>2046-2069</eissn><abstract>Two conformational crystal polymorphs of 3-diethylamino-4-(4-methoxyphenyl)-1,1-dioxo-4
H
-1λ
6
,2-thiazete-4-carbonitrile (DTC) have been analyzed in the 100 K-room temperature range by single crystal X-ray diffraction and high quality DFT calculations. DTC has strongly polar as well as aliphatic substituents but no hydrogen bonding groups, and thus qualifies as a test molecule for the relative importance of electrostatic
vs.
dispersion-repulsion terms. The two polymorphs have the same
P
2
1
/
n
space group and differ by a flipping of the -OCH
3
group, the two conformations being almost equi-energetic and separated by a low barrier. The system is monotropic in the observed temperature range with nearly identical thermal expansion coefficients and energy-temperature slopes, one phase consistently predicted to be more stable in agreement with the relative ease of appearance. Energy decompositions show that the electrostatic term is dominant and stabilizes with decreasing temperature. Dispersion and repulsion show the expected behavior, the former becoming more stabilizing at lower temperature in contrast with increasing repulsion at higher density. Absolute values and trends are very similar in the two phases, explaining the small total energy difference. Geometrical analyses of intermolecular contacts using fingerprint plots, as well as the study of molecular dipole moments as a function of
T
in the framework of the Quantum Theory of Atoms in Molecules, reveal more details of phase stability.
A small conformational change in the asymmetric unit has a significant effect on how non-covalent interactions determine (i) the crystal packing and (ii) the effect of
T
on the relative balance of electrostatics and dispersion-repulsions.</abstract><cop>England</cop><pub>Royal Society of Chemistry</pub><pmid>35559076</pmid><doi>10.1039/c8ra08063a</doi><tpages>1</tpages><orcidid>https://orcid.org/0000-0002-0047-1596</orcidid><orcidid>https://orcid.org/0000-0001-6361-477X</orcidid><orcidid>https://orcid.org/0000-0001-9893-0238</orcidid><oa>free_for_read</oa></addata></record> |
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source | DOAJ Directory of Open Access Journals; Elektronische Zeitschriftenbibliothek - Frei zugängliche E-Journals; PubMed Central; PubMed Central Open Access |
subjects | Aliphatic compounds Bonding strength Chemistry Crystal lattices Crystallography Decomposition Dipole moments Dispersion Eigenvalues Hydrogen bonding Libration Mathematical analysis Phase stability Polymorphism Quantum theory Rigid structures Rigid-body dynamics Single crystals Tensors Thermal expansion Translations X-ray diffraction |
title | A variable-temperature X-ray diffraction and theoretical study of conformational polymorphism in a complex organic molecule (DTC) |
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