Changes in soil microbial diversity and control of Fusarium oxysporum in continuous cropping cucumber greenhouses following biofumigation
Soil biofumigation with Brassia plant parts has been demonstrated to suppress soil-borne pathogens. This effect has been attributed to the bactericidal effect of their glucosinolate degradation products. However, little is known regarding the effect of biofumigation on the microbial community struct...
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| Veröffentlicht in: | Emirates Journal of Food and Agriculture 2018-08, Vol.30 (8), p.644-653 |
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| creator | Meng, Lingbo Runzhi Zhang, Chunyi Zhang, Xiaotong Yao, Zichao Yang S. Li, T. Liu, C. Zheng, X. Wang, N. Xu |
| description | Soil biofumigation with Brassia plant parts has been demonstrated to suppress soil-borne pathogens. This effect has been attributed to the bactericidal effect of their glucosinolate degradation products. However, little is known regarding the effect of biofumigation on the microbial community structure and control of Fusarium oxysporum in continuous cropping cucumber systems. Field and pot experiments were performed to study the effect of biofumigation with brassica crops of different glucosinolate contents on the microbial diversity and control of Fusarium oxysporum during the cucumber growth period in a continuous cropping culture system. Samples collected from biofumigation and control treatments differed in the number of soil bacterial bands observed by denaturing gradient gel electrophoresis (DGGE) profiling, suggesting that biofumigation changed the soil microbial diversity. Compared with control and chemically-fumigated (HY) soils, the biofumigated soil exhibited significantly higher Shannon-Weaver diversity indices for bacteria and fungi. Cluster analysis and principal component analysis revealed that soil bacteria communities were different in the hymexazol (HY)-treated soils compared with the communities before biofumigation (BB) and those in the no fumigation (CK) groups. This was true for the mustard containing high glucosinolates (MHG), mustard containing low glucosinates (MLG), mustard (MU), and turnip (TU) groups. Pot experiments demonstrated that the amounts of Fusarium oxysporum in MHG- and HY-treated soils were significantly lower than those in other biofumigation treatments. These results demonstrate the potential utility of Brassica crops in the control of Fusarium wilt in continuous cucumber cropping systems, and the control effect of MGH was the best compared with other treatments, which could effectively reduce Fusarium oxysporum in soil by more than 60%. |
| doi_str_mv | 10.9755/ejfa.2018.v30.i8.1752 |
| format | Article |
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Li, T. Liu, C. Zheng, X. Wang, N. Xu</creator><creatorcontrib>Meng, Lingbo ; Runzhi Zhang, Chunyi Zhang, Xiaotong Yao, Zichao Yang ; S. Li, T. Liu, C. Zheng, X. Wang, N. Xu</creatorcontrib><description>Soil biofumigation with Brassia plant parts has been demonstrated to suppress soil-borne pathogens. This effect has been attributed to the bactericidal effect of their glucosinolate degradation products. However, little is known regarding the effect of biofumigation on the microbial community structure and control of Fusarium oxysporum in continuous cropping cucumber systems. Field and pot experiments were performed to study the effect of biofumigation with brassica crops of different glucosinolate contents on the microbial diversity and control of Fusarium oxysporum during the cucumber growth period in a continuous cropping culture system. Samples collected from biofumigation and control treatments differed in the number of soil bacterial bands observed by denaturing gradient gel electrophoresis (DGGE) profiling, suggesting that biofumigation changed the soil microbial diversity. Compared with control and chemically-fumigated (HY) soils, the biofumigated soil exhibited significantly higher Shannon-Weaver diversity indices for bacteria and fungi. Cluster analysis and principal component analysis revealed that soil bacteria communities were different in the hymexazol (HY)-treated soils compared with the communities before biofumigation (BB) and those in the no fumigation (CK) groups. This was true for the mustard containing high glucosinolates (MHG), mustard containing low glucosinates (MLG), mustard (MU), and turnip (TU) groups. Pot experiments demonstrated that the amounts of Fusarium oxysporum in MHG- and HY-treated soils were significantly lower than those in other biofumigation treatments. These results demonstrate the potential utility of Brassica crops in the control of Fusarium wilt in continuous cucumber cropping systems, and the control effect of MGH was the best compared with other treatments, which could effectively reduce Fusarium oxysporum in soil by more than 60%.</description><identifier>ISSN: 2079-052X</identifier><identifier>EISSN: 2079-0538</identifier><identifier>DOI: 10.9755/ejfa.2018.v30.i8.1752</identifier><language>eng</language><publisher>Sofia: College of Food & Agriculture, United Arab Emirates University</publisher><subject>Agricultural research ; Anopheles ; Backup software ; Bacteria ; Biodegradation ; Brassica ; Cluster analysis ; Communities ; Community structure ; Companion planting ; Continuous cropping ; Control ; Criminal investigation ; Crop diseases ; Crop residues ; Cropping systems ; Crops ; Cucumbers ; Degradation products ; Diseases and pests ; Diversity indices ; Electrophoresis ; Experiments ; Fumigation ; Fungi ; Fusarium ; Fusarium oxysporum ; Gel electrophoresis ; Glucosinolates ; Greenhouses ; Growth ; Horticulture ; Methods ; Microorganisms ; Mustard ; Organic chemistry ; Pathogenic microorganisms ; Pathogens ; Plant diseases ; Principal components analysis ; Seeds ; Soil analysis ; Soil bacteria ; Soil chemistry ; Soil disinfection ; Soil microbiology ; Soil microorganisms ; Soils ; Wheat ; Wilt</subject><ispartof>Emirates Journal of Food and Agriculture, 2018-08, Vol.30 (8), p.644-653</ispartof><rights>COPYRIGHT 2018 College of Food & Agriculture, United Arab Emirates University</rights><rights>2018. This work is published under https://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License.</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c315t-eafe2f8ce1e32b8de951bcb5614d357b26f22f1315ff09c404449c5ef499c21c3</citedby></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>314,780,784,864,27923,27924</link.rule.ids></links><search><creatorcontrib>Meng, Lingbo</creatorcontrib><creatorcontrib>Runzhi Zhang, Chunyi Zhang, Xiaotong Yao, Zichao Yang</creatorcontrib><creatorcontrib>S. Li, T. Liu, C. Zheng, X. Wang, N. Xu</creatorcontrib><title>Changes in soil microbial diversity and control of Fusarium oxysporum in continuous cropping cucumber greenhouses following biofumigation</title><title>Emirates Journal of Food and Agriculture</title><description>Soil biofumigation with Brassia plant parts has been demonstrated to suppress soil-borne pathogens. This effect has been attributed to the bactericidal effect of their glucosinolate degradation products. However, little is known regarding the effect of biofumigation on the microbial community structure and control of Fusarium oxysporum in continuous cropping cucumber systems. Field and pot experiments were performed to study the effect of biofumigation with brassica crops of different glucosinolate contents on the microbial diversity and control of Fusarium oxysporum during the cucumber growth period in a continuous cropping culture system. Samples collected from biofumigation and control treatments differed in the number of soil bacterial bands observed by denaturing gradient gel electrophoresis (DGGE) profiling, suggesting that biofumigation changed the soil microbial diversity. Compared with control and chemically-fumigated (HY) soils, the biofumigated soil exhibited significantly higher Shannon-Weaver diversity indices for bacteria and fungi. Cluster analysis and principal component analysis revealed that soil bacteria communities were different in the hymexazol (HY)-treated soils compared with the communities before biofumigation (BB) and those in the no fumigation (CK) groups. This was true for the mustard containing high glucosinolates (MHG), mustard containing low glucosinates (MLG), mustard (MU), and turnip (TU) groups. Pot experiments demonstrated that the amounts of Fusarium oxysporum in MHG- and HY-treated soils were significantly lower than those in other biofumigation treatments. These results demonstrate the potential utility of Brassica crops in the control of Fusarium wilt in continuous cucumber cropping systems, and the control effect of MGH was the best compared with other treatments, which could effectively reduce Fusarium oxysporum in soil by more than 60%.</description><subject>Agricultural research</subject><subject>Anopheles</subject><subject>Backup software</subject><subject>Bacteria</subject><subject>Biodegradation</subject><subject>Brassica</subject><subject>Cluster analysis</subject><subject>Communities</subject><subject>Community structure</subject><subject>Companion planting</subject><subject>Continuous cropping</subject><subject>Control</subject><subject>Criminal investigation</subject><subject>Crop diseases</subject><subject>Crop residues</subject><subject>Cropping systems</subject><subject>Crops</subject><subject>Cucumbers</subject><subject>Degradation products</subject><subject>Diseases and pests</subject><subject>Diversity indices</subject><subject>Electrophoresis</subject><subject>Experiments</subject><subject>Fumigation</subject><subject>Fungi</subject><subject>Fusarium</subject><subject>Fusarium oxysporum</subject><subject>Gel electrophoresis</subject><subject>Glucosinolates</subject><subject>Greenhouses</subject><subject>Growth</subject><subject>Horticulture</subject><subject>Methods</subject><subject>Microorganisms</subject><subject>Mustard</subject><subject>Organic chemistry</subject><subject>Pathogenic microorganisms</subject><subject>Pathogens</subject><subject>Plant diseases</subject><subject>Principal components analysis</subject><subject>Seeds</subject><subject>Soil analysis</subject><subject>Soil bacteria</subject><subject>Soil chemistry</subject><subject>Soil disinfection</subject><subject>Soil microbiology</subject><subject>Soil microorganisms</subject><subject>Soils</subject><subject>Wheat</subject><subject>Wilt</subject><issn>2079-052X</issn><issn>2079-0538</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2018</creationdate><recordtype>article</recordtype><sourceid>KPI</sourceid><sourceid>8G5</sourceid><sourceid>ABUWG</sourceid><sourceid>AFKRA</sourceid><sourceid>AZQEC</sourceid><sourceid>BENPR</sourceid><sourceid>CCPQU</sourceid><sourceid>DWQXO</sourceid><sourceid>GNUQQ</sourceid><sourceid>GUQSH</sourceid><sourceid>M2O</sourceid><recordid>eNo9kcFq3DAQhk1poMs2jxAQ5JTDOpIsre1jWLptSCA5tJCbkLUjZ4ItuZK1zT5C3royW3qagflmhp-vKK4YLdtaylt4s7rklDXlsaIlNiWrJf9UrDit2w2VVfP5f89fvhSXMWJHhagrWUu2Kj52r9r1EAk6Ej0OZEQTfId6IAc8Qog4n4h2B2K8m4MfiLdkn6IOmEbi309x8iF3eXsB0CWfIskXpgldT0wyaewgkD4AuNc8y5-sHwb_Zxl36G0asdczeve1uLB6iHD5r66LX_tvP3c_No9P3-93d48bUzE5b0Bb4LYxwKDiXXOAVrLOdHLLxCFn6vjWcm5ZZq2lrRE5q2iNBCva1nBmqnVxfb47Bf87QZzVm0_B5ZeKM74VTS3aOlM3Z6rXAyh0Szp4n3udYlQPz_fqbkvrKpOCZVae2Zw7xgBWTQFHHU6KUbVIUosktUhSWZLCRi2Sqr9GL4rn</recordid><startdate>20180801</startdate><enddate>20180801</enddate><creator>Meng, Lingbo</creator><creator>Runzhi Zhang, Chunyi Zhang, Xiaotong Yao, Zichao Yang</creator><creator>S. 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Li, T. Liu, C. Zheng, X. Wang, N. Xu</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c315t-eafe2f8ce1e32b8de951bcb5614d357b26f22f1315ff09c404449c5ef499c21c3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2018</creationdate><topic>Agricultural research</topic><topic>Anopheles</topic><topic>Backup software</topic><topic>Bacteria</topic><topic>Biodegradation</topic><topic>Brassica</topic><topic>Cluster analysis</topic><topic>Communities</topic><topic>Community structure</topic><topic>Companion planting</topic><topic>Continuous cropping</topic><topic>Control</topic><topic>Criminal investigation</topic><topic>Crop diseases</topic><topic>Crop residues</topic><topic>Cropping systems</topic><topic>Crops</topic><topic>Cucumbers</topic><topic>Degradation products</topic><topic>Diseases and pests</topic><topic>Diversity indices</topic><topic>Electrophoresis</topic><topic>Experiments</topic><topic>Fumigation</topic><topic>Fungi</topic><topic>Fusarium</topic><topic>Fusarium oxysporum</topic><topic>Gel electrophoresis</topic><topic>Glucosinolates</topic><topic>Greenhouses</topic><topic>Growth</topic><topic>Horticulture</topic><topic>Methods</topic><topic>Microorganisms</topic><topic>Mustard</topic><topic>Organic chemistry</topic><topic>Pathogenic microorganisms</topic><topic>Pathogens</topic><topic>Plant diseases</topic><topic>Principal components analysis</topic><topic>Seeds</topic><topic>Soil analysis</topic><topic>Soil bacteria</topic><topic>Soil chemistry</topic><topic>Soil disinfection</topic><topic>Soil microbiology</topic><topic>Soil microorganisms</topic><topic>Soils</topic><topic>Wheat</topic><topic>Wilt</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Meng, Lingbo</creatorcontrib><creatorcontrib>Runzhi Zhang, Chunyi Zhang, Xiaotong Yao, Zichao Yang</creatorcontrib><creatorcontrib>S. 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Li, T. Liu, C. Zheng, X. Wang, N. Xu</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Changes in soil microbial diversity and control of Fusarium oxysporum in continuous cropping cucumber greenhouses following biofumigation</atitle><jtitle>Emirates Journal of Food and Agriculture</jtitle><date>2018-08-01</date><risdate>2018</risdate><volume>30</volume><issue>8</issue><spage>644</spage><epage>653</epage><pages>644-653</pages><issn>2079-052X</issn><eissn>2079-0538</eissn><abstract>Soil biofumigation with Brassia plant parts has been demonstrated to suppress soil-borne pathogens. This effect has been attributed to the bactericidal effect of their glucosinolate degradation products. However, little is known regarding the effect of biofumigation on the microbial community structure and control of Fusarium oxysporum in continuous cropping cucumber systems. Field and pot experiments were performed to study the effect of biofumigation with brassica crops of different glucosinolate contents on the microbial diversity and control of Fusarium oxysporum during the cucumber growth period in a continuous cropping culture system. Samples collected from biofumigation and control treatments differed in the number of soil bacterial bands observed by denaturing gradient gel electrophoresis (DGGE) profiling, suggesting that biofumigation changed the soil microbial diversity. Compared with control and chemically-fumigated (HY) soils, the biofumigated soil exhibited significantly higher Shannon-Weaver diversity indices for bacteria and fungi. Cluster analysis and principal component analysis revealed that soil bacteria communities were different in the hymexazol (HY)-treated soils compared with the communities before biofumigation (BB) and those in the no fumigation (CK) groups. This was true for the mustard containing high glucosinolates (MHG), mustard containing low glucosinates (MLG), mustard (MU), and turnip (TU) groups. Pot experiments demonstrated that the amounts of Fusarium oxysporum in MHG- and HY-treated soils were significantly lower than those in other biofumigation treatments. These results demonstrate the potential utility of Brassica crops in the control of Fusarium wilt in continuous cucumber cropping systems, and the control effect of MGH was the best compared with other treatments, which could effectively reduce Fusarium oxysporum in soil by more than 60%.</abstract><cop>Sofia</cop><pub>College of Food & Agriculture, United Arab Emirates University</pub><doi>10.9755/ejfa.2018.v30.i8.1752</doi><tpages>10</tpages><oa>free_for_read</oa></addata></record> |
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| subjects | Agricultural research Anopheles Backup software Bacteria Biodegradation Brassica Cluster analysis Communities Community structure Companion planting Continuous cropping Control Criminal investigation Crop diseases Crop residues Cropping systems Crops Cucumbers Degradation products Diseases and pests Diversity indices Electrophoresis Experiments Fumigation Fungi Fusarium Fusarium oxysporum Gel electrophoresis Glucosinolates Greenhouses Growth Horticulture Methods Microorganisms Mustard Organic chemistry Pathogenic microorganisms Pathogens Plant diseases Principal components analysis Seeds Soil analysis Soil bacteria Soil chemistry Soil disinfection Soil microbiology Soil microorganisms Soils Wheat Wilt |
| title | Changes in soil microbial diversity and control of Fusarium oxysporum in continuous cropping cucumber greenhouses following biofumigation |
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