An integrative approach to the study of Xiphinema brevicolle Lordello and Da Costa 1961, supports its limited distribution worldwide (Nematoda: Longidoridae)
Xiphinema americanum group has a cosmopolitan distribution, with several species having particular importance as virus-vectors of four economically important nepoviruses naturally occurring in the USA with IAI quarantine status for Europe. The morphological diagnosis of the species is problematic du...
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Veröffentlicht in: | European journal of plant pathology 2019-02, Vol.153 (2), p.441-464 |
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creator | Lazarova, Stela Oliveira, Claudio Marcelo G. Prior, Thomas Peneva, Vlada Kumari, Shesh |
description | Xiphinema americanum
group has a cosmopolitan distribution, with several species having particular importance as virus-vectors of four economically important nepoviruses naturally occurring in the USA with IAI quarantine status for Europe. The morphological diagnosis of the species is problematic due to the limited diagnostic characters, overlapping morphometrics and incomplete taxonomic descriptions. An ongoing issue within the
X. americanum
group is the determination of species belonging to the
X. brevicolle
subgroup. By using a phylogenetic framework, molecular and morphometric data of the topotype population we demonstrate that certain of the published DNA sequences have been misidentified and belong to closely related species such as
X. taylori
,
X. diffusum
or unknown/unidentified species. Studying again the morphology and morphometrics of populations identified as
X. brevicolle
from the Czech Republic the identity, phylogenetic position and genetic variability of these populations have been clarified. These belong to a different species that is described herein as
X. parataylori
n. sp. Multi-gene phylogenies were reconstructed using nuclear ribosomal (18S rRNA gene, ITS1 and ITS2 regions, D2-D3 expansion segments of 28S rRNA gene) and mitochondrial DNA (partial
cox
1 and
nad
4) and the position of
X. brevicolle
(topotype population) to the most closely related species is shown. Morphology and species specific sequences were linked and the worldwide distribution discussed. The validity of
X. brevicolle
and the long-standing controversies about the taxonomic status of
X. diffusum
and
X. taylori
have been clarified.
Xiphinema taylori
and
X. diffusum
may represent complexes of cryptic species, however more comprehensive studies involving additional populations and materials from the type localities are needed to support this hypothesis. |
doi_str_mv | 10.1007/s10658-018-1571-z |
format | Article |
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group has a cosmopolitan distribution, with several species having particular importance as virus-vectors of four economically important nepoviruses naturally occurring in the USA with IAI quarantine status for Europe. The morphological diagnosis of the species is problematic due to the limited diagnostic characters, overlapping morphometrics and incomplete taxonomic descriptions. An ongoing issue within the
X. americanum
group is the determination of species belonging to the
X. brevicolle
subgroup. By using a phylogenetic framework, molecular and morphometric data of the topotype population we demonstrate that certain of the published DNA sequences have been misidentified and belong to closely related species such as
X. taylori
,
X. diffusum
or unknown/unidentified species. Studying again the morphology and morphometrics of populations identified as
X. brevicolle
from the Czech Republic the identity, phylogenetic position and genetic variability of these populations have been clarified. These belong to a different species that is described herein as
X. parataylori
n. sp. Multi-gene phylogenies were reconstructed using nuclear ribosomal (18S rRNA gene, ITS1 and ITS2 regions, D2-D3 expansion segments of 28S rRNA gene) and mitochondrial DNA (partial
cox
1 and
nad
4) and the position of
X. brevicolle
(topotype population) to the most closely related species is shown. Morphology and species specific sequences were linked and the worldwide distribution discussed. The validity of
X. brevicolle
and the long-standing controversies about the taxonomic status of
X. diffusum
and
X. taylori
have been clarified.
Xiphinema taylori
and
X. diffusum
may represent complexes of cryptic species, however more comprehensive studies involving additional populations and materials from the type localities are needed to support this hypothesis.</description><identifier>ISSN: 0929-1873</identifier><identifier>EISSN: 1573-8469</identifier><identifier>DOI: 10.1007/s10658-018-1571-z</identifier><language>eng</language><publisher>Dordrecht: Springer Netherlands</publisher><subject>Agriculture ; Biomedical and Life Sciences ; Cryptic species ; Deoxyribonucleic acid ; Diagnostic systems ; DNA ; Ecology ; Economic importance ; Gene sequencing ; Genetic variability ; Life Sciences ; Mitochondrial DNA ; Morphology ; Nucleotide sequence ; Phylogenetics ; Phylogeny ; Plant Pathology ; Plant Sciences ; Population genetics ; Population studies ; Populations ; rRNA 18S ; rRNA 28S ; Species ; Species diffusion ; Subgroups ; Taxonomy ; Viruses ; Xiphinema</subject><ispartof>European journal of plant pathology, 2019-02, Vol.153 (2), p.441-464</ispartof><rights>Koninklijke Nederlandse Planteziektenkundige Vereniging 2018</rights><rights>European Journal of Plant Pathology is a copyright of Springer, (2018). All Rights Reserved.</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c316t-193cebc9207eefa481843fd783c391f5ba5e01541808eb2c79b57257769ffcd23</citedby><cites>FETCH-LOGICAL-c316t-193cebc9207eefa481843fd783c391f5ba5e01541808eb2c79b57257769ffcd23</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://link.springer.com/content/pdf/10.1007/s10658-018-1571-z$$EPDF$$P50$$Gspringer$$H</linktopdf><linktohtml>$$Uhttps://link.springer.com/10.1007/s10658-018-1571-z$$EHTML$$P50$$Gspringer$$H</linktohtml><link.rule.ids>314,780,784,27924,27925,41488,42557,51319</link.rule.ids></links><search><creatorcontrib>Lazarova, Stela</creatorcontrib><creatorcontrib>Oliveira, Claudio Marcelo G.</creatorcontrib><creatorcontrib>Prior, Thomas</creatorcontrib><creatorcontrib>Peneva, Vlada</creatorcontrib><creatorcontrib>Kumari, Shesh</creatorcontrib><title>An integrative approach to the study of Xiphinema brevicolle Lordello and Da Costa 1961, supports its limited distribution worldwide (Nematoda: Longidoridae)</title><title>European journal of plant pathology</title><addtitle>Eur J Plant Pathol</addtitle><description>Xiphinema americanum
group has a cosmopolitan distribution, with several species having particular importance as virus-vectors of four economically important nepoviruses naturally occurring in the USA with IAI quarantine status for Europe. The morphological diagnosis of the species is problematic due to the limited diagnostic characters, overlapping morphometrics and incomplete taxonomic descriptions. An ongoing issue within the
X. americanum
group is the determination of species belonging to the
X. brevicolle
subgroup. By using a phylogenetic framework, molecular and morphometric data of the topotype population we demonstrate that certain of the published DNA sequences have been misidentified and belong to closely related species such as
X. taylori
,
X. diffusum
or unknown/unidentified species. Studying again the morphology and morphometrics of populations identified as
X. brevicolle
from the Czech Republic the identity, phylogenetic position and genetic variability of these populations have been clarified. These belong to a different species that is described herein as
X. parataylori
n. sp. Multi-gene phylogenies were reconstructed using nuclear ribosomal (18S rRNA gene, ITS1 and ITS2 regions, D2-D3 expansion segments of 28S rRNA gene) and mitochondrial DNA (partial
cox
1 and
nad
4) and the position of
X. brevicolle
(topotype population) to the most closely related species is shown. Morphology and species specific sequences were linked and the worldwide distribution discussed. The validity of
X. brevicolle
and the long-standing controversies about the taxonomic status of
X. diffusum
and
X. taylori
have been clarified.
Xiphinema taylori
and
X. diffusum
may represent complexes of cryptic species, however more comprehensive studies involving additional populations and materials from the type localities are needed to support this hypothesis.</description><subject>Agriculture</subject><subject>Biomedical and Life Sciences</subject><subject>Cryptic species</subject><subject>Deoxyribonucleic acid</subject><subject>Diagnostic systems</subject><subject>DNA</subject><subject>Ecology</subject><subject>Economic importance</subject><subject>Gene sequencing</subject><subject>Genetic variability</subject><subject>Life Sciences</subject><subject>Mitochondrial DNA</subject><subject>Morphology</subject><subject>Nucleotide sequence</subject><subject>Phylogenetics</subject><subject>Phylogeny</subject><subject>Plant Pathology</subject><subject>Plant Sciences</subject><subject>Population genetics</subject><subject>Population studies</subject><subject>Populations</subject><subject>rRNA 18S</subject><subject>rRNA 28S</subject><subject>Species</subject><subject>Species diffusion</subject><subject>Subgroups</subject><subject>Taxonomy</subject><subject>Viruses</subject><subject>Xiphinema</subject><issn>0929-1873</issn><issn>1573-8469</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2019</creationdate><recordtype>article</recordtype><sourceid>ABUWG</sourceid><sourceid>AFKRA</sourceid><sourceid>AZQEC</sourceid><sourceid>BENPR</sourceid><sourceid>CCPQU</sourceid><sourceid>DWQXO</sourceid><sourceid>GNUQQ</sourceid><recordid>eNp1kU2LFDEQhoMoOK7-AG8FXhRsTXWmO4m3ZfyEQS8K3kI6qZ7J0tNpk_Quu__F_2qWETx5CJXD-zxF8TL2HPkb5Fy-zcj7TjUcVYOdxObuAdvUj2jUttcP2YbrVjeopHjMnuR8xSujdbthvy9nCHOhQ7IlXBPYZUnRuiOUCOVIkMvqbyGO8DMsxzDTycKQ6Dq4OE0E-5g8TVMEO3t4b2EXc7GAusfXkNdlialkCPVN4RQKefAhlxSGtYQ4w01Mk78JnuDl1you0dt3VTkfgo8peEuvnrJHo50yPfs7L9iPjx--7z43-2-fvuwu940T2JcGtXA0ON1ySTTarUK1FaOXSjihcewG2xHHbouKKxpaJ_XQybaTstfj6HwrLtiLs7ce_2ulXMxVXNNcV5qWa6G5ElrXFJ5TLsWcE41mSeFk061Bbu5bMOcWTG3B3Ldg7irTnplcs_OB0j_z_6E_HmuM7g</recordid><startdate>20190201</startdate><enddate>20190201</enddate><creator>Lazarova, Stela</creator><creator>Oliveira, Claudio Marcelo G.</creator><creator>Prior, Thomas</creator><creator>Peneva, Vlada</creator><creator>Kumari, Shesh</creator><general>Springer Netherlands</general><general>Springer Nature B.V</general><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7QL</scope><scope>7T7</scope><scope>7U9</scope><scope>7X2</scope><scope>88A</scope><scope>8AO</scope><scope>8FD</scope><scope>8FE</scope><scope>8FH</scope><scope>8FK</scope><scope>ABUWG</scope><scope>AFKRA</scope><scope>ATCPS</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BHPHI</scope><scope>C1K</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FR3</scope><scope>GNUQQ</scope><scope>H94</scope><scope>HCIFZ</scope><scope>LK8</scope><scope>M0K</scope><scope>M7N</scope><scope>M7P</scope><scope>P64</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope></search><sort><creationdate>20190201</creationdate><title>An integrative approach to the study of Xiphinema brevicolle Lordello and Da Costa 1961, supports its limited distribution worldwide (Nematoda: Longidoridae)</title><author>Lazarova, Stela ; 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group has a cosmopolitan distribution, with several species having particular importance as virus-vectors of four economically important nepoviruses naturally occurring in the USA with IAI quarantine status for Europe. The morphological diagnosis of the species is problematic due to the limited diagnostic characters, overlapping morphometrics and incomplete taxonomic descriptions. An ongoing issue within the
X. americanum
group is the determination of species belonging to the
X. brevicolle
subgroup. By using a phylogenetic framework, molecular and morphometric data of the topotype population we demonstrate that certain of the published DNA sequences have been misidentified and belong to closely related species such as
X. taylori
,
X. diffusum
or unknown/unidentified species. Studying again the morphology and morphometrics of populations identified as
X. brevicolle
from the Czech Republic the identity, phylogenetic position and genetic variability of these populations have been clarified. These belong to a different species that is described herein as
X. parataylori
n. sp. Multi-gene phylogenies were reconstructed using nuclear ribosomal (18S rRNA gene, ITS1 and ITS2 regions, D2-D3 expansion segments of 28S rRNA gene) and mitochondrial DNA (partial
cox
1 and
nad
4) and the position of
X. brevicolle
(topotype population) to the most closely related species is shown. Morphology and species specific sequences were linked and the worldwide distribution discussed. The validity of
X. brevicolle
and the long-standing controversies about the taxonomic status of
X. diffusum
and
X. taylori
have been clarified.
Xiphinema taylori
and
X. diffusum
may represent complexes of cryptic species, however more comprehensive studies involving additional populations and materials from the type localities are needed to support this hypothesis.</abstract><cop>Dordrecht</cop><pub>Springer Netherlands</pub><doi>10.1007/s10658-018-1571-z</doi><tpages>24</tpages></addata></record> |
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ispartof | European journal of plant pathology, 2019-02, Vol.153 (2), p.441-464 |
issn | 0929-1873 1573-8469 |
language | eng |
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source | SpringerNature Journals |
subjects | Agriculture Biomedical and Life Sciences Cryptic species Deoxyribonucleic acid Diagnostic systems DNA Ecology Economic importance Gene sequencing Genetic variability Life Sciences Mitochondrial DNA Morphology Nucleotide sequence Phylogenetics Phylogeny Plant Pathology Plant Sciences Population genetics Population studies Populations rRNA 18S rRNA 28S Species Species diffusion Subgroups Taxonomy Viruses Xiphinema |
title | An integrative approach to the study of Xiphinema brevicolle Lordello and Da Costa 1961, supports its limited distribution worldwide (Nematoda: Longidoridae) |
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