Structure and Metabolic-Flow Analysis of Molecular Complexity in a 13C-Labeled Tree by 2D and 3D NMR

Improved signal identification for biological small molecules (BSMs) in a mixture was demonstrated by using multidimensional NMR on samples from 13C‐enriched Rhododendron japonicum (59.5 atom%) cultivated in air containing 13C‐labeled carbon dioxide for 14 weeks. The resonance assignment of 386 carb...

Ausführliche Beschreibung

Gespeichert in:
Bibliographische Detailangaben
Veröffentlicht in:Angewandte Chemie 2016-05, Vol.128 (20), p.6104-6107
Hauptverfasser: Komatsu, Takanori, Ohishi, Risa, Shino, Amiu, Kikuchi, Jun
Format: Artikel
Sprache:eng
Schlagworte:
Online-Zugang:Volltext
Tags: Tag hinzufügen
Keine Tags, Fügen Sie den ersten Tag hinzu!
container_end_page 6107
container_issue 20
container_start_page 6104
container_title Angewandte Chemie
container_volume 128
creator Komatsu, Takanori
Ohishi, Risa
Shino, Amiu
Kikuchi, Jun
description Improved signal identification for biological small molecules (BSMs) in a mixture was demonstrated by using multidimensional NMR on samples from 13C‐enriched Rhododendron japonicum (59.5 atom%) cultivated in air containing 13C‐labeled carbon dioxide for 14 weeks. The resonance assignment of 386 carbon atoms and 380 hydrogen atoms in the mixture was achieved. 42 BSMs, including eight that were unlisted in the spectral databases, were identified. Comparisons between the experimental values and the 13C chemical shift values calculated by density functional theory supported the identifications of unlisted BSMs. Tracing the 13C/12C ratio by multidimensional NMR spectra revealed faster and slower turnover ratios of BSMs involved in central metabolism and those categorized as secondary metabolites, respectively. The identification of BSMs and subsequent flow analysis provided insight into the metabolic systems of the plant. Markierte Bäume: Mehrdimensionale NMR‐Spektroskopie und Isotopenmarkierung ermöglichen die umfassende Analyse niedermolekularer Substanzen in dem Baum Rhododendron japonicum. Dabei wurden unerwartete Moleküle identifiziert und Informationen über ihre Stoffwechselwege gesammelt.
doi_str_mv 10.1002/ange.201600334
format Article
fullrecord <record><control><sourceid>proquest_wiley</sourceid><recordid>TN_cdi_proquest_journals_2057041711</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><sourcerecordid>2057041711</sourcerecordid><originalsourceid>FETCH-LOGICAL-i2104-993e2e1e6fb89e08d51902a88ed51736931de0bdfbff4897a1fb44ebf20802fc3</originalsourceid><addsrcrecordid>eNp9kUtPwzAQhC0EEuVx5WyJc2D9SBwf20ALUlsQD3G0nGaNAm5TnERt_j2Boh457a40M9J-Q8gFgysGwK_t6h2vOLAEQAh5QAYs5iwSKlaHZAAgZZRyqY_JSV1_AEDClR6Q4rkJ7aJpA1K7KugMG5tXvlxEY19t6HBlfVeXNa0cnVUeF623gWbVcu1xWzYdLVfUUiayaGpz9FjQl4BI847ym988cUPns6czcuSsr_H8b56S1_HtS3YXTR8m99lwGpWcgYy0FsiRYeLyVCOkRcw0cJum2G9KJFqwAiEvXO6cTLWyzOVSYu44pMDdQpySy13uOlRfLdaN-aja0P9QGw6xAskUY_-pmEqVlCoG3av0TrUpPXZmHcqlDZ1hYH5gmx_YZg_bDOeT2_3Ve6Odt6wb3O69NnyaRPWFmLf5xIwes9nzKHszUnwDQ3yBmA</addsrcrecordid><sourcetype>Aggregation Database</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype><pqid>1787447509</pqid></control><display><type>article</type><title>Structure and Metabolic-Flow Analysis of Molecular Complexity in a 13C-Labeled Tree by 2D and 3D NMR</title><source>Wiley Online Library All Journals</source><creator>Komatsu, Takanori ; Ohishi, Risa ; Shino, Amiu ; Kikuchi, Jun</creator><creatorcontrib>Komatsu, Takanori ; Ohishi, Risa ; Shino, Amiu ; Kikuchi, Jun</creatorcontrib><description>Improved signal identification for biological small molecules (BSMs) in a mixture was demonstrated by using multidimensional NMR on samples from 13C‐enriched Rhododendron japonicum (59.5 atom%) cultivated in air containing 13C‐labeled carbon dioxide for 14 weeks. The resonance assignment of 386 carbon atoms and 380 hydrogen atoms in the mixture was achieved. 42 BSMs, including eight that were unlisted in the spectral databases, were identified. Comparisons between the experimental values and the 13C chemical shift values calculated by density functional theory supported the identifications of unlisted BSMs. Tracing the 13C/12C ratio by multidimensional NMR spectra revealed faster and slower turnover ratios of BSMs involved in central metabolism and those categorized as secondary metabolites, respectively. The identification of BSMs and subsequent flow analysis provided insight into the metabolic systems of the plant. Markierte Bäume: Mehrdimensionale NMR‐Spektroskopie und Isotopenmarkierung ermöglichen die umfassende Analyse niedermolekularer Substanzen in dem Baum Rhododendron japonicum. Dabei wurden unerwartete Moleküle identifiziert und Informationen über ihre Stoffwechselwege gesammelt.</description><identifier>ISSN: 0044-8249</identifier><identifier>EISSN: 1521-3757</identifier><identifier>DOI: 10.1002/ange.201600334</identifier><language>eng</language><publisher>Weinheim: Blackwell Publishing Ltd</publisher><subject>Carbon 13 ; Carbon dioxide ; Chemistry ; Density functional theory ; DFT-Rechnungen ; Hydrogen atoms ; Isotopenmarkierung ; Metabolism ; Metabolites ; Molecular chains ; Molecular structure ; NMR ; NMR-Spektroskopie ; Nuclear magnetic resonance ; Organic chemistry ; Secondary metabolites ; Stoffwechsel ; Strukturaufklärung</subject><ispartof>Angewandte Chemie, 2016-05, Vol.128 (20), p.6104-6107</ispartof><rights>2016 WILEY‐VCH Verlag GmbH &amp; Co. KGaA, Weinheim</rights><rights>2016 WILEY-VCH Verlag GmbH &amp; Co. KGaA, Weinheim</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><orcidid>0000-0002-6809-394X</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://onlinelibrary.wiley.com/doi/pdf/10.1002%2Fange.201600334$$EPDF$$P50$$Gwiley$$H</linktopdf><linktohtml>$$Uhttps://onlinelibrary.wiley.com/doi/full/10.1002%2Fange.201600334$$EHTML$$P50$$Gwiley$$H</linktohtml><link.rule.ids>314,780,784,1416,27923,27924,45573,45574</link.rule.ids></links><search><creatorcontrib>Komatsu, Takanori</creatorcontrib><creatorcontrib>Ohishi, Risa</creatorcontrib><creatorcontrib>Shino, Amiu</creatorcontrib><creatorcontrib>Kikuchi, Jun</creatorcontrib><title>Structure and Metabolic-Flow Analysis of Molecular Complexity in a 13C-Labeled Tree by 2D and 3D NMR</title><title>Angewandte Chemie</title><addtitle>Angew. Chem</addtitle><description>Improved signal identification for biological small molecules (BSMs) in a mixture was demonstrated by using multidimensional NMR on samples from 13C‐enriched Rhododendron japonicum (59.5 atom%) cultivated in air containing 13C‐labeled carbon dioxide for 14 weeks. The resonance assignment of 386 carbon atoms and 380 hydrogen atoms in the mixture was achieved. 42 BSMs, including eight that were unlisted in the spectral databases, were identified. Comparisons between the experimental values and the 13C chemical shift values calculated by density functional theory supported the identifications of unlisted BSMs. Tracing the 13C/12C ratio by multidimensional NMR spectra revealed faster and slower turnover ratios of BSMs involved in central metabolism and those categorized as secondary metabolites, respectively. The identification of BSMs and subsequent flow analysis provided insight into the metabolic systems of the plant. Markierte Bäume: Mehrdimensionale NMR‐Spektroskopie und Isotopenmarkierung ermöglichen die umfassende Analyse niedermolekularer Substanzen in dem Baum Rhododendron japonicum. Dabei wurden unerwartete Moleküle identifiziert und Informationen über ihre Stoffwechselwege gesammelt.</description><subject>Carbon 13</subject><subject>Carbon dioxide</subject><subject>Chemistry</subject><subject>Density functional theory</subject><subject>DFT-Rechnungen</subject><subject>Hydrogen atoms</subject><subject>Isotopenmarkierung</subject><subject>Metabolism</subject><subject>Metabolites</subject><subject>Molecular chains</subject><subject>Molecular structure</subject><subject>NMR</subject><subject>NMR-Spektroskopie</subject><subject>Nuclear magnetic resonance</subject><subject>Organic chemistry</subject><subject>Secondary metabolites</subject><subject>Stoffwechsel</subject><subject>Strukturaufklärung</subject><issn>0044-8249</issn><issn>1521-3757</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2016</creationdate><recordtype>article</recordtype><recordid>eNp9kUtPwzAQhC0EEuVx5WyJc2D9SBwf20ALUlsQD3G0nGaNAm5TnERt_j2Boh457a40M9J-Q8gFgysGwK_t6h2vOLAEQAh5QAYs5iwSKlaHZAAgZZRyqY_JSV1_AEDClR6Q4rkJ7aJpA1K7KugMG5tXvlxEY19t6HBlfVeXNa0cnVUeF623gWbVcu1xWzYdLVfUUiayaGpz9FjQl4BI847ym988cUPns6czcuSsr_H8b56S1_HtS3YXTR8m99lwGpWcgYy0FsiRYeLyVCOkRcw0cJum2G9KJFqwAiEvXO6cTLWyzOVSYu44pMDdQpySy13uOlRfLdaN-aja0P9QGw6xAskUY_-pmEqVlCoG3av0TrUpPXZmHcqlDZ1hYH5gmx_YZg_bDOeT2_3Ve6Odt6wb3O69NnyaRPWFmLf5xIwes9nzKHszUnwDQ3yBmA</recordid><startdate>20160510</startdate><enddate>20160510</enddate><creator>Komatsu, Takanori</creator><creator>Ohishi, Risa</creator><creator>Shino, Amiu</creator><creator>Kikuchi, Jun</creator><general>Blackwell Publishing Ltd</general><general>Wiley Subscription Services, Inc</general><scope>BSCLL</scope><scope>7SR</scope><scope>7U5</scope><scope>8BQ</scope><scope>8FD</scope><scope>JG9</scope><scope>L7M</scope><orcidid>https://orcid.org/0000-0002-6809-394X</orcidid></search><sort><creationdate>20160510</creationdate><title>Structure and Metabolic-Flow Analysis of Molecular Complexity in a 13C-Labeled Tree by 2D and 3D NMR</title><author>Komatsu, Takanori ; Ohishi, Risa ; Shino, Amiu ; Kikuchi, Jun</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-i2104-993e2e1e6fb89e08d51902a88ed51736931de0bdfbff4897a1fb44ebf20802fc3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2016</creationdate><topic>Carbon 13</topic><topic>Carbon dioxide</topic><topic>Chemistry</topic><topic>Density functional theory</topic><topic>DFT-Rechnungen</topic><topic>Hydrogen atoms</topic><topic>Isotopenmarkierung</topic><topic>Metabolism</topic><topic>Metabolites</topic><topic>Molecular chains</topic><topic>Molecular structure</topic><topic>NMR</topic><topic>NMR-Spektroskopie</topic><topic>Nuclear magnetic resonance</topic><topic>Organic chemistry</topic><topic>Secondary metabolites</topic><topic>Stoffwechsel</topic><topic>Strukturaufklärung</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Komatsu, Takanori</creatorcontrib><creatorcontrib>Ohishi, Risa</creatorcontrib><creatorcontrib>Shino, Amiu</creatorcontrib><creatorcontrib>Kikuchi, Jun</creatorcontrib><collection>Istex</collection><collection>Engineered Materials Abstracts</collection><collection>Solid State and Superconductivity Abstracts</collection><collection>METADEX</collection><collection>Technology Research Database</collection><collection>Materials Research Database</collection><collection>Advanced Technologies Database with Aerospace</collection><jtitle>Angewandte Chemie</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Komatsu, Takanori</au><au>Ohishi, Risa</au><au>Shino, Amiu</au><au>Kikuchi, Jun</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Structure and Metabolic-Flow Analysis of Molecular Complexity in a 13C-Labeled Tree by 2D and 3D NMR</atitle><jtitle>Angewandte Chemie</jtitle><addtitle>Angew. Chem</addtitle><date>2016-05-10</date><risdate>2016</risdate><volume>128</volume><issue>20</issue><spage>6104</spage><epage>6107</epage><pages>6104-6107</pages><issn>0044-8249</issn><eissn>1521-3757</eissn><abstract>Improved signal identification for biological small molecules (BSMs) in a mixture was demonstrated by using multidimensional NMR on samples from 13C‐enriched Rhododendron japonicum (59.5 atom%) cultivated in air containing 13C‐labeled carbon dioxide for 14 weeks. The resonance assignment of 386 carbon atoms and 380 hydrogen atoms in the mixture was achieved. 42 BSMs, including eight that were unlisted in the spectral databases, were identified. Comparisons between the experimental values and the 13C chemical shift values calculated by density functional theory supported the identifications of unlisted BSMs. Tracing the 13C/12C ratio by multidimensional NMR spectra revealed faster and slower turnover ratios of BSMs involved in central metabolism and those categorized as secondary metabolites, respectively. The identification of BSMs and subsequent flow analysis provided insight into the metabolic systems of the plant. Markierte Bäume: Mehrdimensionale NMR‐Spektroskopie und Isotopenmarkierung ermöglichen die umfassende Analyse niedermolekularer Substanzen in dem Baum Rhododendron japonicum. Dabei wurden unerwartete Moleküle identifiziert und Informationen über ihre Stoffwechselwege gesammelt.</abstract><cop>Weinheim</cop><pub>Blackwell Publishing Ltd</pub><doi>10.1002/ange.201600334</doi><tpages>4</tpages><orcidid>https://orcid.org/0000-0002-6809-394X</orcidid></addata></record>
fulltext fulltext
identifier ISSN: 0044-8249
ispartof Angewandte Chemie, 2016-05, Vol.128 (20), p.6104-6107
issn 0044-8249
1521-3757
language eng
recordid cdi_proquest_journals_2057041711
source Wiley Online Library All Journals
subjects Carbon 13
Carbon dioxide
Chemistry
Density functional theory
DFT-Rechnungen
Hydrogen atoms
Isotopenmarkierung
Metabolism
Metabolites
Molecular chains
Molecular structure
NMR
NMR-Spektroskopie
Nuclear magnetic resonance
Organic chemistry
Secondary metabolites
Stoffwechsel
Strukturaufklärung
title Structure and Metabolic-Flow Analysis of Molecular Complexity in a 13C-Labeled Tree by 2D and 3D NMR
url https://sfx.bib-bvb.de/sfx_tum?ctx_ver=Z39.88-2004&ctx_enc=info:ofi/enc:UTF-8&ctx_tim=2025-01-11T09%3A05%3A22IST&url_ver=Z39.88-2004&url_ctx_fmt=infofi/fmt:kev:mtx:ctx&rfr_id=info:sid/primo.exlibrisgroup.com:primo3-Article-proquest_wiley&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.genre=article&rft.atitle=Structure%20and%20Metabolic-Flow%20Analysis%20of%20Molecular%20Complexity%20in%20a%2013C-Labeled%20Tree%20by%202D%20and%203D%20NMR&rft.jtitle=Angewandte%20Chemie&rft.au=Komatsu,%20Takanori&rft.date=2016-05-10&rft.volume=128&rft.issue=20&rft.spage=6104&rft.epage=6107&rft.pages=6104-6107&rft.issn=0044-8249&rft.eissn=1521-3757&rft_id=info:doi/10.1002/ange.201600334&rft_dat=%3Cproquest_wiley%3E2057041711%3C/proquest_wiley%3E%3Curl%3E%3C/url%3E&disable_directlink=true&sfx.directlink=off&sfx.report_link=0&rft_id=info:oai/&rft_pqid=1787447509&rft_id=info:pmid/&rfr_iscdi=true