Description of an orthologous cluster of ochratoxin A biosynthetic genes in Aspergillus and Penicillium species. A comparative analysis
Ochratoxin A (OTA) is one of the most important mycotoxins due to its toxic properties and worldwide distribution which is produced by several Aspergillus and Penicillium species. The knowledge of OTA biosynthetic genes and understanding of the mechanisms involved in their regulation are essential....
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description | Ochratoxin A (OTA) is one of the most important mycotoxins due to its toxic properties and worldwide distribution which is produced by several Aspergillus and Penicillium species. The knowledge of OTA biosynthetic genes and understanding of the mechanisms involved in their regulation are essential. In this work, we obtained a clear picture of biosynthetic genes organization in the main OTA-producing Aspergillus and Penicillium species (A. steynii, A. westerdijkiae, A. niger, A. carbonarius and P. nordicum) using complete genome sequences obtained in this work or previously available on databases. The results revealed a region containing five ORFs which predicted five proteins: halogenase, bZIP transcription factor, cytochrome P450 monooxygenase, non-ribosomal peptide synthetase and polyketide synthase in all the five species. Genetic synteny was conserved in both Penicillium and Aspergillus species although genomic location seemed to be different since the clusters presented different flanking regions (except for A. steynii and A. westerdijkiae); these observations support the hypothesis of the orthology of this genomic region and that it might have been acquired by horizontal transfer.
New real-time RT-PCR assays for quantification of the expression of these OTA biosynthetic genes were developed. In all species, the five genes were consistently expressed in OTA-producing strains in permissive conditions. These protocols might favour futures studies on the regulation of biosynthetic genes in order to develop new efficient control methods to avoid OTA entering the food chain.
•A genomic region containing five ORFs was described in five OTA-producing species.•Its genetic synteny is conserved in Aspergillus and Penicillium species.•It is the first time that a similar cluster is described in Penicillium.•New specific real-time RT-PCR assays were designed to evaluate gene expression.•The five genes are only expressed in OTA producing strains. |
doi_str_mv | 10.1016/j.ijfoodmicro.2017.12.028 |
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New real-time RT-PCR assays for quantification of the expression of these OTA biosynthetic genes were developed. In all species, the five genes were consistently expressed in OTA-producing strains in permissive conditions. These protocols might favour futures studies on the regulation of biosynthetic genes in order to develop new efficient control methods to avoid OTA entering the food chain.
•A genomic region containing five ORFs was described in five OTA-producing species.•Its genetic synteny is conserved in Aspergillus and Penicillium species.•It is the first time that a similar cluster is described in Penicillium.•New specific real-time RT-PCR assays were designed to evaluate gene expression.•The five genes are only expressed in OTA producing strains.</description><identifier>ISSN: 0168-1605</identifier><identifier>EISSN: 1879-3460</identifier><identifier>DOI: 10.1016/j.ijfoodmicro.2017.12.028</identifier><identifier>PMID: 29324288</identifier><language>eng</language><publisher>Netherlands: Elsevier B.V</publisher><subject>Aspergillus ; Aspergillus - genetics ; Aspergillus - metabolism ; Basic-Leucine Zipper Transcription Factors - genetics ; Biosynthesis ; bZIP ; Cluster ; Cluster analysis ; Comparative analysis ; Control methods ; Cytochrome ; Cytochrome P-450 Enzyme System - genetics ; Cytochrome P450 ; Cytochrome P450 monooxygenase ; Evolutionary conservation ; Food chains ; Gene expression ; Gene regulation ; Gene sequencing ; Genes ; Genome, Fungal - genetics ; Genomes ; Halogenase ; Horizontal transfer ; Metabolites ; Multigene Family - genetics ; Mycotoxins ; Mycotoxins - genetics ; Mycotoxins - metabolism ; NRPS ; Ochratoxin A ; Ochratoxins - biosynthesis ; Orthology ; P450 ; Penicillium ; Penicillium - genetics ; Penicillium - metabolism ; Peptide Synthases - genetics ; PKS ; Polyketide synthase ; Polyketide Synthases - genetics ; Polymerase chain reaction ; Proteins ; Species ; Synteny</subject><ispartof>International journal of food microbiology, 2018-03, Vol.268, p.35-43</ispartof><rights>2018 Elsevier B.V.</rights><rights>Copyright © 2018 Elsevier B.V. All rights reserved.</rights><rights>Copyright Elsevier BV Mar 2, 2018</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c508t-a99f7a58dd3e39bc0557a15f8407483bae4b438f788168f1a8310003dc36c0fd3</citedby><cites>FETCH-LOGICAL-c508t-a99f7a58dd3e39bc0557a15f8407483bae4b438f788168f1a8310003dc36c0fd3</cites><orcidid>0000-0001-8023-1260</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktohtml>$$Uhttps://dx.doi.org/10.1016/j.ijfoodmicro.2017.12.028$$EHTML$$P50$$Gelsevier$$H</linktohtml><link.rule.ids>314,780,784,3548,27922,27923,45993</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/29324288$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Gil-Serna, Jessica</creatorcontrib><creatorcontrib>García-Díaz, Marta</creatorcontrib><creatorcontrib>González-Jaén, María Teresa</creatorcontrib><creatorcontrib>Vázquez, Covadonga</creatorcontrib><creatorcontrib>Patiño, Belén</creatorcontrib><title>Description of an orthologous cluster of ochratoxin A biosynthetic genes in Aspergillus and Penicillium species. A comparative analysis</title><title>International journal of food microbiology</title><addtitle>Int J Food Microbiol</addtitle><description>Ochratoxin A (OTA) is one of the most important mycotoxins due to its toxic properties and worldwide distribution which is produced by several Aspergillus and Penicillium species. The knowledge of OTA biosynthetic genes and understanding of the mechanisms involved in their regulation are essential. In this work, we obtained a clear picture of biosynthetic genes organization in the main OTA-producing Aspergillus and Penicillium species (A. steynii, A. westerdijkiae, A. niger, A. carbonarius and P. nordicum) using complete genome sequences obtained in this work or previously available on databases. The results revealed a region containing five ORFs which predicted five proteins: halogenase, bZIP transcription factor, cytochrome P450 monooxygenase, non-ribosomal peptide synthetase and polyketide synthase in all the five species. Genetic synteny was conserved in both Penicillium and Aspergillus species although genomic location seemed to be different since the clusters presented different flanking regions (except for A. steynii and A. westerdijkiae); these observations support the hypothesis of the orthology of this genomic region and that it might have been acquired by horizontal transfer.
New real-time RT-PCR assays for quantification of the expression of these OTA biosynthetic genes were developed. In all species, the five genes were consistently expressed in OTA-producing strains in permissive conditions. These protocols might favour futures studies on the regulation of biosynthetic genes in order to develop new efficient control methods to avoid OTA entering the food chain.
•A genomic region containing five ORFs was described in five OTA-producing species.•Its genetic synteny is conserved in Aspergillus and Penicillium species.•It is the first time that a similar cluster is described in Penicillium.•New specific real-time RT-PCR assays were designed to evaluate gene expression.•The five genes are only expressed in OTA producing strains.</description><subject>Aspergillus</subject><subject>Aspergillus - genetics</subject><subject>Aspergillus - metabolism</subject><subject>Basic-Leucine Zipper Transcription Factors - genetics</subject><subject>Biosynthesis</subject><subject>bZIP</subject><subject>Cluster</subject><subject>Cluster analysis</subject><subject>Comparative analysis</subject><subject>Control methods</subject><subject>Cytochrome</subject><subject>Cytochrome P-450 Enzyme System - genetics</subject><subject>Cytochrome P450</subject><subject>Cytochrome P450 monooxygenase</subject><subject>Evolutionary conservation</subject><subject>Food chains</subject><subject>Gene expression</subject><subject>Gene regulation</subject><subject>Gene sequencing</subject><subject>Genes</subject><subject>Genome, Fungal - genetics</subject><subject>Genomes</subject><subject>Halogenase</subject><subject>Horizontal transfer</subject><subject>Metabolites</subject><subject>Multigene Family - genetics</subject><subject>Mycotoxins</subject><subject>Mycotoxins - genetics</subject><subject>Mycotoxins - metabolism</subject><subject>NRPS</subject><subject>Ochratoxin A</subject><subject>Ochratoxins - biosynthesis</subject><subject>Orthology</subject><subject>P450</subject><subject>Penicillium</subject><subject>Penicillium - genetics</subject><subject>Penicillium - metabolism</subject><subject>Peptide Synthases - genetics</subject><subject>PKS</subject><subject>Polyketide synthase</subject><subject>Polyketide Synthases - genetics</subject><subject>Polymerase chain reaction</subject><subject>Proteins</subject><subject>Species</subject><subject>Synteny</subject><issn>0168-1605</issn><issn>1879-3460</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2018</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNqNUcuO1DAQtBCInV34BWTEOcGO48Q5roblIa0EBzhbjt2ZcZTEwXZWO1_Ab9OjWRBHLrbcXVXt6iLkLWclZ7x5P5Z-HEJws7cxlBXjbcmrklXqGdlx1XaFqBv2nOwQqwreMHlFrlMaGWNSCPaSXFWdqOpKqR359QGSjX7NPiw0DNTgGfMxTOEQtkTttKUM8dwJ9hhNDo9-obe09yGdlnyE7C09wAKJnutphXjwE5JQyNFvsHiLT7_NFFvWQyqRbMO8GtTyD4AwM52ST6_Ii8FMCV4_3Tfkx8e77_vPxf3XT1_2t_eFlUzlwnTd0BqpnBMgut4yKVvD5aBq1tZK9AbqvhZqaJVC7wM3SnC0LZwVjWWDEzfk3UV3jeHnBinrMWwRP5F0xWopZM0agajugsL9phRh0Gv0s4knzZk-R6BH_U8E-hyB5pXGCJD75mnC1s_g_jL_7BwB-wsA0OeDh6gTbmax4HwEm7UL_j_G_AZg56BV</recordid><startdate>20180302</startdate><enddate>20180302</enddate><creator>Gil-Serna, Jessica</creator><creator>García-Díaz, Marta</creator><creator>González-Jaén, María Teresa</creator><creator>Vázquez, Covadonga</creator><creator>Patiño, Belén</creator><general>Elsevier B.V</general><general>Elsevier BV</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7QL</scope><scope>7QO</scope><scope>7QR</scope><scope>7T7</scope><scope>7U9</scope><scope>8FD</scope><scope>C1K</scope><scope>FR3</scope><scope>H94</scope><scope>M7N</scope><scope>P64</scope><scope>RC3</scope><orcidid>https://orcid.org/0000-0001-8023-1260</orcidid></search><sort><creationdate>20180302</creationdate><title>Description of an orthologous cluster of ochratoxin A biosynthetic genes in Aspergillus and Penicillium species. A comparative analysis</title><author>Gil-Serna, Jessica ; García-Díaz, Marta ; González-Jaén, María Teresa ; Vázquez, Covadonga ; Patiño, Belén</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c508t-a99f7a58dd3e39bc0557a15f8407483bae4b438f788168f1a8310003dc36c0fd3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2018</creationdate><topic>Aspergillus</topic><topic>Aspergillus - genetics</topic><topic>Aspergillus - metabolism</topic><topic>Basic-Leucine Zipper Transcription Factors - genetics</topic><topic>Biosynthesis</topic><topic>bZIP</topic><topic>Cluster</topic><topic>Cluster analysis</topic><topic>Comparative analysis</topic><topic>Control methods</topic><topic>Cytochrome</topic><topic>Cytochrome P-450 Enzyme System - genetics</topic><topic>Cytochrome P450</topic><topic>Cytochrome P450 monooxygenase</topic><topic>Evolutionary conservation</topic><topic>Food chains</topic><topic>Gene expression</topic><topic>Gene regulation</topic><topic>Gene sequencing</topic><topic>Genes</topic><topic>Genome, Fungal - genetics</topic><topic>Genomes</topic><topic>Halogenase</topic><topic>Horizontal transfer</topic><topic>Metabolites</topic><topic>Multigene Family - genetics</topic><topic>Mycotoxins</topic><topic>Mycotoxins - genetics</topic><topic>Mycotoxins - metabolism</topic><topic>NRPS</topic><topic>Ochratoxin A</topic><topic>Ochratoxins - biosynthesis</topic><topic>Orthology</topic><topic>P450</topic><topic>Penicillium</topic><topic>Penicillium - genetics</topic><topic>Penicillium - metabolism</topic><topic>Peptide Synthases - genetics</topic><topic>PKS</topic><topic>Polyketide synthase</topic><topic>Polyketide Synthases - genetics</topic><topic>Polymerase chain reaction</topic><topic>Proteins</topic><topic>Species</topic><topic>Synteny</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Gil-Serna, Jessica</creatorcontrib><creatorcontrib>García-Díaz, Marta</creatorcontrib><creatorcontrib>González-Jaén, María Teresa</creatorcontrib><creatorcontrib>Vázquez, Covadonga</creatorcontrib><creatorcontrib>Patiño, Belén</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Bacteriology Abstracts (Microbiology B)</collection><collection>Biotechnology Research Abstracts</collection><collection>Chemoreception Abstracts</collection><collection>Industrial and Applied Microbiology Abstracts (Microbiology A)</collection><collection>Virology and AIDS Abstracts</collection><collection>Technology Research Database</collection><collection>Environmental Sciences and Pollution Management</collection><collection>Engineering Research Database</collection><collection>AIDS and Cancer Research Abstracts</collection><collection>Algology Mycology and Protozoology Abstracts (Microbiology C)</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Genetics Abstracts</collection><jtitle>International journal of food microbiology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Gil-Serna, Jessica</au><au>García-Díaz, Marta</au><au>González-Jaén, María Teresa</au><au>Vázquez, Covadonga</au><au>Patiño, Belén</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Description of an orthologous cluster of ochratoxin A biosynthetic genes in Aspergillus and Penicillium species. A comparative analysis</atitle><jtitle>International journal of food microbiology</jtitle><addtitle>Int J Food Microbiol</addtitle><date>2018-03-02</date><risdate>2018</risdate><volume>268</volume><spage>35</spage><epage>43</epage><pages>35-43</pages><issn>0168-1605</issn><eissn>1879-3460</eissn><abstract>Ochratoxin A (OTA) is one of the most important mycotoxins due to its toxic properties and worldwide distribution which is produced by several Aspergillus and Penicillium species. The knowledge of OTA biosynthetic genes and understanding of the mechanisms involved in their regulation are essential. In this work, we obtained a clear picture of biosynthetic genes organization in the main OTA-producing Aspergillus and Penicillium species (A. steynii, A. westerdijkiae, A. niger, A. carbonarius and P. nordicum) using complete genome sequences obtained in this work or previously available on databases. The results revealed a region containing five ORFs which predicted five proteins: halogenase, bZIP transcription factor, cytochrome P450 monooxygenase, non-ribosomal peptide synthetase and polyketide synthase in all the five species. Genetic synteny was conserved in both Penicillium and Aspergillus species although genomic location seemed to be different since the clusters presented different flanking regions (except for A. steynii and A. westerdijkiae); these observations support the hypothesis of the orthology of this genomic region and that it might have been acquired by horizontal transfer.
New real-time RT-PCR assays for quantification of the expression of these OTA biosynthetic genes were developed. In all species, the five genes were consistently expressed in OTA-producing strains in permissive conditions. These protocols might favour futures studies on the regulation of biosynthetic genes in order to develop new efficient control methods to avoid OTA entering the food chain.
•A genomic region containing five ORFs was described in five OTA-producing species.•Its genetic synteny is conserved in Aspergillus and Penicillium species.•It is the first time that a similar cluster is described in Penicillium.•New specific real-time RT-PCR assays were designed to evaluate gene expression.•The five genes are only expressed in OTA producing strains.</abstract><cop>Netherlands</cop><pub>Elsevier B.V</pub><pmid>29324288</pmid><doi>10.1016/j.ijfoodmicro.2017.12.028</doi><tpages>9</tpages><orcidid>https://orcid.org/0000-0001-8023-1260</orcidid></addata></record> |
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subjects | Aspergillus Aspergillus - genetics Aspergillus - metabolism Basic-Leucine Zipper Transcription Factors - genetics Biosynthesis bZIP Cluster Cluster analysis Comparative analysis Control methods Cytochrome Cytochrome P-450 Enzyme System - genetics Cytochrome P450 Cytochrome P450 monooxygenase Evolutionary conservation Food chains Gene expression Gene regulation Gene sequencing Genes Genome, Fungal - genetics Genomes Halogenase Horizontal transfer Metabolites Multigene Family - genetics Mycotoxins Mycotoxins - genetics Mycotoxins - metabolism NRPS Ochratoxin A Ochratoxins - biosynthesis Orthology P450 Penicillium Penicillium - genetics Penicillium - metabolism Peptide Synthases - genetics PKS Polyketide synthase Polyketide Synthases - genetics Polymerase chain reaction Proteins Species Synteny |
title | Description of an orthologous cluster of ochratoxin A biosynthetic genes in Aspergillus and Penicillium species. A comparative analysis |
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