Diaporthe from walnut tree (Juglans regia) in China, with insight of the Diaporthe eres complex
Species of Diaporthe are important plant pathogenic fungi that commonly occur on a wide range of hosts. They are relatively difficult to identify due to their extreme similarity in morphology and confusing multigene phylogeny, especially in the Diaporthe eres complex. In the present study, isolates...
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| Veröffentlicht in: | Mycological progress 2018-07, Vol.17 (7), p.841-853 |
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| creator | Fan, XinLei Yang, Qin Bezerra, Jadson D. P. Alvarez, Lourdes V. Tian, ChengMing |
| description | Species of
Diaporthe
are important plant pathogenic fungi that commonly occur on a wide range of hosts. They are relatively difficult to identify due to their extreme similarity in morphology and confusing multigene phylogeny, especially in the
Diaporthe eres
complex. In the present study, isolates were collected from diseased branches of
Juglans regia
in China. Most strains were clustered into the
D. eres
species complex based on the combined internal transcribed spacer (ITS) region, partial calmodulin (CAL), histone H3 (HIS), translation elongation factor 1-alpha (TEF1-α) and beta-tubulin (TUB) genes. To focus on this complex, CAL, TEF1-α and TUB were selected in further phylogenetic analyses that showed a better topology compared with combined five-gene phylogeny. Results revealed that all strains which clustered in the
Diaporthe eres
complex from
Juglans regia
in China were
Diaporthe eres
. Results suggested a revised species criterion in the
Diaporthe eres
complex. The current study uncovered a new species here described as
Diaporthe. tibetensis
. |
| doi_str_mv | 10.1007/s11557-018-1395-4 |
| format | Article |
| fullrecord | <record><control><sourceid>proquest_cross</sourceid><recordid>TN_cdi_proquest_journals_2023849129</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><sourcerecordid>2023849129</sourcerecordid><originalsourceid>FETCH-LOGICAL-c316t-ea4c5012e2d391e9d1e219aca3ad84d331b752edd3e3073a42476fcaf20230fa3</originalsourceid><addsrcrecordid>eNp1kE1LxDAQhoMouK7-AG8BLwpGM0n6dZT1mwUvCt5CbCdtl25bk5bVf29KBU-eZgae9x14CDkFfgWcJ9ceIIoSxiFlILOIqT2ygDQGlmaR2A97DAlTEL8fkiPvN5wrpbhcEH1bm75zQ4XUum5Ld6Zpx4EODpGeP49lY1pPHZa1uaB1S1dV3ZpLuquHKpy-LquBdpZO8b8idOhp3m37Br-OyYE1jceT37kkb_d3r6tHtn55eFrdrFkuIR4YGpVHHASKQmaAWQEoIDO5kaZIVSElfCSRwKKQKHkijRIqiW1urOBCcmvkkpzNvb3rPkf0g950o2vDSz0hqcpAZIGCmcpd571Dq3tXb4371sD15FHPHnXwqCePWoWMmDM-sG2J7q_5_9APKWl1VQ</addsrcrecordid><sourcetype>Aggregation Database</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype><pqid>2023849129</pqid></control><display><type>article</type><title>Diaporthe from walnut tree (Juglans regia) in China, with insight of the Diaporthe eres complex</title><source>SpringerNature Journals</source><creator>Fan, XinLei ; Yang, Qin ; Bezerra, Jadson D. P. ; Alvarez, Lourdes V. ; Tian, ChengMing</creator><creatorcontrib>Fan, XinLei ; Yang, Qin ; Bezerra, Jadson D. P. ; Alvarez, Lourdes V. ; Tian, ChengMing</creatorcontrib><description>Species of
Diaporthe
are important plant pathogenic fungi that commonly occur on a wide range of hosts. They are relatively difficult to identify due to their extreme similarity in morphology and confusing multigene phylogeny, especially in the
Diaporthe eres
complex. In the present study, isolates were collected from diseased branches of
Juglans regia
in China. Most strains were clustered into the
D. eres
species complex based on the combined internal transcribed spacer (ITS) region, partial calmodulin (CAL), histone H3 (HIS), translation elongation factor 1-alpha (TEF1-α) and beta-tubulin (TUB) genes. To focus on this complex, CAL, TEF1-α and TUB were selected in further phylogenetic analyses that showed a better topology compared with combined five-gene phylogeny. Results revealed that all strains which clustered in the
Diaporthe eres
complex from
Juglans regia
in China were
Diaporthe eres
. Results suggested a revised species criterion in the
Diaporthe eres
complex. The current study uncovered a new species here described as
Diaporthe. tibetensis
.</description><identifier>ISSN: 1617-416X</identifier><identifier>EISSN: 1861-8952</identifier><identifier>DOI: 10.1007/s11557-018-1395-4</identifier><language>eng</language><publisher>Berlin/Heidelberg: Springer Berlin Heidelberg</publisher><subject>Biomedical and Life Sciences ; Branches ; Calcium-binding protein ; Calmodulin ; Diaporthe ; Diaporthe eres ; Ecology ; Elongation ; Fungi ; Histone H3 ; Juglans regia ; Life Sciences ; Mathematical morphology ; Microbiology ; New species ; Original Article ; Phylogeny ; Physical characteristics ; Plant Sciences ; Spacer ; Topology ; Translation elongation ; Tubulin ; Walnuts</subject><ispartof>Mycological progress, 2018-07, Vol.17 (7), p.841-853</ispartof><rights>German Mycological Society and Springer-Verlag GmbH Germany, part of Springer Nature 2018</rights><rights>Mycological Progress is a copyright of Springer, (2018). All Rights Reserved.</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c316t-ea4c5012e2d391e9d1e219aca3ad84d331b752edd3e3073a42476fcaf20230fa3</citedby><cites>FETCH-LOGICAL-c316t-ea4c5012e2d391e9d1e219aca3ad84d331b752edd3e3073a42476fcaf20230fa3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://link.springer.com/content/pdf/10.1007/s11557-018-1395-4$$EPDF$$P50$$Gspringer$$H</linktopdf><linktohtml>$$Uhttps://link.springer.com/10.1007/s11557-018-1395-4$$EHTML$$P50$$Gspringer$$H</linktohtml><link.rule.ids>315,782,786,27933,27934,41497,42566,51328</link.rule.ids></links><search><creatorcontrib>Fan, XinLei</creatorcontrib><creatorcontrib>Yang, Qin</creatorcontrib><creatorcontrib>Bezerra, Jadson D. P.</creatorcontrib><creatorcontrib>Alvarez, Lourdes V.</creatorcontrib><creatorcontrib>Tian, ChengMing</creatorcontrib><title>Diaporthe from walnut tree (Juglans regia) in China, with insight of the Diaporthe eres complex</title><title>Mycological progress</title><addtitle>Mycol Progress</addtitle><description>Species of
Diaporthe
are important plant pathogenic fungi that commonly occur on a wide range of hosts. They are relatively difficult to identify due to their extreme similarity in morphology and confusing multigene phylogeny, especially in the
Diaporthe eres
complex. In the present study, isolates were collected from diseased branches of
Juglans regia
in China. Most strains were clustered into the
D. eres
species complex based on the combined internal transcribed spacer (ITS) region, partial calmodulin (CAL), histone H3 (HIS), translation elongation factor 1-alpha (TEF1-α) and beta-tubulin (TUB) genes. To focus on this complex, CAL, TEF1-α and TUB were selected in further phylogenetic analyses that showed a better topology compared with combined five-gene phylogeny. Results revealed that all strains which clustered in the
Diaporthe eres
complex from
Juglans regia
in China were
Diaporthe eres
. Results suggested a revised species criterion in the
Diaporthe eres
complex. The current study uncovered a new species here described as
Diaporthe. tibetensis
.</description><subject>Biomedical and Life Sciences</subject><subject>Branches</subject><subject>Calcium-binding protein</subject><subject>Calmodulin</subject><subject>Diaporthe</subject><subject>Diaporthe eres</subject><subject>Ecology</subject><subject>Elongation</subject><subject>Fungi</subject><subject>Histone H3</subject><subject>Juglans regia</subject><subject>Life Sciences</subject><subject>Mathematical morphology</subject><subject>Microbiology</subject><subject>New species</subject><subject>Original Article</subject><subject>Phylogeny</subject><subject>Physical characteristics</subject><subject>Plant Sciences</subject><subject>Spacer</subject><subject>Topology</subject><subject>Translation elongation</subject><subject>Tubulin</subject><subject>Walnuts</subject><issn>1617-416X</issn><issn>1861-8952</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2018</creationdate><recordtype>article</recordtype><sourceid>AFKRA</sourceid><sourceid>AZQEC</sourceid><sourceid>BENPR</sourceid><sourceid>CCPQU</sourceid><sourceid>DWQXO</sourceid><sourceid>GNUQQ</sourceid><recordid>eNp1kE1LxDAQhoMouK7-AG8BLwpGM0n6dZT1mwUvCt5CbCdtl25bk5bVf29KBU-eZgae9x14CDkFfgWcJ9ceIIoSxiFlILOIqT2ygDQGlmaR2A97DAlTEL8fkiPvN5wrpbhcEH1bm75zQ4XUum5Ld6Zpx4EODpGeP49lY1pPHZa1uaB1S1dV3ZpLuquHKpy-LquBdpZO8b8idOhp3m37Br-OyYE1jceT37kkb_d3r6tHtn55eFrdrFkuIR4YGpVHHASKQmaAWQEoIDO5kaZIVSElfCSRwKKQKHkijRIqiW1urOBCcmvkkpzNvb3rPkf0g950o2vDSz0hqcpAZIGCmcpd571Dq3tXb4371sD15FHPHnXwqCePWoWMmDM-sG2J7q_5_9APKWl1VQ</recordid><startdate>20180701</startdate><enddate>20180701</enddate><creator>Fan, XinLei</creator><creator>Yang, Qin</creator><creator>Bezerra, Jadson D. P.</creator><creator>Alvarez, Lourdes V.</creator><creator>Tian, ChengMing</creator><general>Springer Berlin Heidelberg</general><general>Springer Nature B.V</general><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7X2</scope><scope>8FE</scope><scope>8FH</scope><scope>8FK</scope><scope>AFKRA</scope><scope>ATCPS</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BHPHI</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>GNUQQ</scope><scope>HCIFZ</scope><scope>LK8</scope><scope>M0K</scope><scope>M7N</scope><scope>M7P</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope></search><sort><creationdate>20180701</creationdate><title>Diaporthe from walnut tree (Juglans regia) in China, with insight of the Diaporthe eres complex</title><author>Fan, XinLei ; Yang, Qin ; Bezerra, Jadson D. P. ; Alvarez, Lourdes V. ; Tian, ChengMing</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c316t-ea4c5012e2d391e9d1e219aca3ad84d331b752edd3e3073a42476fcaf20230fa3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2018</creationdate><topic>Biomedical and Life Sciences</topic><topic>Branches</topic><topic>Calcium-binding protein</topic><topic>Calmodulin</topic><topic>Diaporthe</topic><topic>Diaporthe eres</topic><topic>Ecology</topic><topic>Elongation</topic><topic>Fungi</topic><topic>Histone H3</topic><topic>Juglans regia</topic><topic>Life Sciences</topic><topic>Mathematical morphology</topic><topic>Microbiology</topic><topic>New species</topic><topic>Original Article</topic><topic>Phylogeny</topic><topic>Physical characteristics</topic><topic>Plant Sciences</topic><topic>Spacer</topic><topic>Topology</topic><topic>Translation elongation</topic><topic>Tubulin</topic><topic>Walnuts</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Fan, XinLei</creatorcontrib><creatorcontrib>Yang, Qin</creatorcontrib><creatorcontrib>Bezerra, Jadson D. P.</creatorcontrib><creatorcontrib>Alvarez, Lourdes V.</creatorcontrib><creatorcontrib>Tian, ChengMing</creatorcontrib><collection>CrossRef</collection><collection>ProQuest Central (Corporate)</collection><collection>Agricultural Science Collection</collection><collection>ProQuest SciTech Collection</collection><collection>ProQuest Natural Science Collection</collection><collection>ProQuest Central (Alumni) (purchase pre-March 2016)</collection><collection>ProQuest Central UK/Ireland</collection><collection>Agricultural & Environmental Science Collection</collection><collection>ProQuest Central Essentials</collection><collection>Biological Science Collection</collection><collection>ProQuest Central</collection><collection>Natural Science Collection</collection><collection>ProQuest One Community College</collection><collection>ProQuest Central Korea</collection><collection>ProQuest Central Student</collection><collection>SciTech Premium Collection</collection><collection>ProQuest Biological Science Collection</collection><collection>Agricultural Science Database</collection><collection>Algology Mycology and Protozoology Abstracts (Microbiology C)</collection><collection>Biological Science Database</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><jtitle>Mycological progress</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Fan, XinLei</au><au>Yang, Qin</au><au>Bezerra, Jadson D. P.</au><au>Alvarez, Lourdes V.</au><au>Tian, ChengMing</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Diaporthe from walnut tree (Juglans regia) in China, with insight of the Diaporthe eres complex</atitle><jtitle>Mycological progress</jtitle><stitle>Mycol Progress</stitle><date>2018-07-01</date><risdate>2018</risdate><volume>17</volume><issue>7</issue><spage>841</spage><epage>853</epage><pages>841-853</pages><issn>1617-416X</issn><eissn>1861-8952</eissn><abstract>Species of
Diaporthe
are important plant pathogenic fungi that commonly occur on a wide range of hosts. They are relatively difficult to identify due to their extreme similarity in morphology and confusing multigene phylogeny, especially in the
Diaporthe eres
complex. In the present study, isolates were collected from diseased branches of
Juglans regia
in China. Most strains were clustered into the
D. eres
species complex based on the combined internal transcribed spacer (ITS) region, partial calmodulin (CAL), histone H3 (HIS), translation elongation factor 1-alpha (TEF1-α) and beta-tubulin (TUB) genes. To focus on this complex, CAL, TEF1-α and TUB were selected in further phylogenetic analyses that showed a better topology compared with combined five-gene phylogeny. Results revealed that all strains which clustered in the
Diaporthe eres
complex from
Juglans regia
in China were
Diaporthe eres
. Results suggested a revised species criterion in the
Diaporthe eres
complex. The current study uncovered a new species here described as
Diaporthe. tibetensis
.</abstract><cop>Berlin/Heidelberg</cop><pub>Springer Berlin Heidelberg</pub><doi>10.1007/s11557-018-1395-4</doi><tpages>13</tpages></addata></record> |
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| subjects | Biomedical and Life Sciences Branches Calcium-binding protein Calmodulin Diaporthe Diaporthe eres Ecology Elongation Fungi Histone H3 Juglans regia Life Sciences Mathematical morphology Microbiology New species Original Article Phylogeny Physical characteristics Plant Sciences Spacer Topology Translation elongation Tubulin Walnuts |
| title | Diaporthe from walnut tree (Juglans regia) in China, with insight of the Diaporthe eres complex |
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