Involvement of conformational isomerism in the complexity of the crystal network of 1‐(4‐nitrophenyl)‐1H‐1,3‐benzimidazole derivatives driven by C—H…A (A = NO2, Npy and π) and orthogonal Npy…NO2 and ONO…Csp2 interactions
A detailed structural analysis of the benzimidazole nitroarenes 1‐(4‐nitrophenyl)‐1H‐1,3‐benzimidazole, C13H9N3O2, (I), 1‐(4‐nitrophenyl)‐2‐phenyl‐1H‐1,3‐benzimidazole, C19H13N3O2, (II), and 2‐(3‐methylphenyl)‐1‐(4‐nitrophenyl)‐1H‐1,3‐benzimidazole, C20H15N3O2, (III), has been performed. They are no...
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creator | García-Aranda, Mónica I. Gómez-Castro, Carlos Z. García-Báez, Efrén V. Gómez, Yolanda Gómez y Castrejón-Flores, José L. Padilla-Martínez, Itzia I. |
description | A detailed structural analysis of the benzimidazole nitroarenes 1‐(4‐nitrophenyl)‐1H‐1,3‐benzimidazole, C13H9N3O2, (I), 1‐(4‐nitrophenyl)‐2‐phenyl‐1H‐1,3‐benzimidazole, C19H13N3O2, (II), and 2‐(3‐methylphenyl)‐1‐(4‐nitrophenyl)‐1H‐1,3‐benzimidazole, C20H15N3O2, (III), has been performed. They are nonplanar structures whose crystal arrangement is governed by Csp2—H…A (A = NO2, Npy and π) hydrogen bonding. The inherent complexity of the supramolecular arrangements of compounds (I) (Z′ = 2) and (II) (Z′ = 4) into tapes, helices and sheets is the result of the additional participation of π– and n–π* (n = O and Npy; π* = Csp2 and ) interactions that contribute to the stabilization of the equi‐energetic conformations adopted by each of the independent molecules in the asymmetric unit. In contrast, compound (III) (Z′ = 1) is self‐paired, probably due to the effect of the steric demand of the methyl group on the crystal packing. Theoretical ab initio calculations confirmed that the presence of the arene ring at the benzimidazole 2‐position increases the rotational barrier of the nitrobenzene ring and also supports the electrostatic nature of the orthogonal ONO…Csp2 and Npy…NO2 interactions.
Participation of π– and n–π* (n = O and Npy; π* = Csp2 and ) interactions in the equi‐energetic conformations of 1‐(4‐nitrophenyl)‐1H‐1,3‐benzimidazoles. |
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Participation of π– and n–π* (n = O and Npy; π* = Csp2 and ) interactions in the equi‐energetic conformations of 1‐(4‐nitrophenyl)‐1H‐1,3‐benzimidazoles.</description><identifier>ISSN: 2053-2296</identifier><identifier>ISSN: 0108-2701</identifier><identifier>EISSN: 2053-2296</identifier><identifier>EISSN: 1600-5759</identifier><identifier>DOI: 10.1107/S2053229618003406</identifier><language>eng</language><publisher>5 Abbey Square, Chester, Cheshire CH1 2HU, England: International Union of Crystallography</publisher><subject>Chemical bonds ; Complexity ; conformational isomerism ; Crystal structure ; Crystals ; Helices ; helix ; high‐Z′ structure ; Hydrogen bonding ; Nitric oxide ; Nitrobenzene ; Nitrogen dioxide ; orthogonal nitro…C interaction ; orthogonal nitro…N interaction ; snapshot conformer ; Structural analysis</subject><ispartof>Acta crystallographica. Section C, Crystal structure communications, 2018-04, Vol.74 (4), p.428-436</ispartof><rights>Garcá-Aranda et al. 2018</rights><rights>Copyright Wiley Subscription Services, Inc. Apr 2018</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://onlinelibrary.wiley.com/doi/pdf/10.1107%2FS2053229618003406$$EPDF$$P50$$Gwiley$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://onlinelibrary.wiley.com/doi/full/10.1107%2FS2053229618003406$$EHTML$$P50$$Gwiley$$Hfree_for_read</linktohtml><link.rule.ids>314,776,780,1411,27903,27904,45553,45554</link.rule.ids></links><search><creatorcontrib>García-Aranda, Mónica I.</creatorcontrib><creatorcontrib>Gómez-Castro, Carlos Z.</creatorcontrib><creatorcontrib>García-Báez, Efrén V.</creatorcontrib><creatorcontrib>Gómez, Yolanda Gómez y</creatorcontrib><creatorcontrib>Castrejón-Flores, José L.</creatorcontrib><creatorcontrib>Padilla-Martínez, Itzia I.</creatorcontrib><title>Involvement of conformational isomerism in the complexity of the crystal network of 1‐(4‐nitrophenyl)‐1H‐1,3‐benzimidazole derivatives driven by C—H…A (A = NO2, Npy and π) and orthogonal Npy…NO2 and ONO…Csp2 interactions</title><title>Acta crystallographica. Section C, Crystal structure communications</title><description>A detailed structural analysis of the benzimidazole nitroarenes 1‐(4‐nitrophenyl)‐1H‐1,3‐benzimidazole, C13H9N3O2, (I), 1‐(4‐nitrophenyl)‐2‐phenyl‐1H‐1,3‐benzimidazole, C19H13N3O2, (II), and 2‐(3‐methylphenyl)‐1‐(4‐nitrophenyl)‐1H‐1,3‐benzimidazole, C20H15N3O2, (III), has been performed. They are nonplanar structures whose crystal arrangement is governed by Csp2—H…A (A = NO2, Npy and π) hydrogen bonding. The inherent complexity of the supramolecular arrangements of compounds (I) (Z′ = 2) and (II) (Z′ = 4) into tapes, helices and sheets is the result of the additional participation of π– and n–π* (n = O and Npy; π* = Csp2 and ) interactions that contribute to the stabilization of the equi‐energetic conformations adopted by each of the independent molecules in the asymmetric unit. In contrast, compound (III) (Z′ = 1) is self‐paired, probably due to the effect of the steric demand of the methyl group on the crystal packing. Theoretical ab initio calculations confirmed that the presence of the arene ring at the benzimidazole 2‐position increases the rotational barrier of the nitrobenzene ring and also supports the electrostatic nature of the orthogonal ONO…Csp2 and Npy…NO2 interactions.
Participation of π– and n–π* (n = O and Npy; π* = Csp2 and ) interactions in the equi‐energetic conformations of 1‐(4‐nitrophenyl)‐1H‐1,3‐benzimidazoles.</description><subject>Chemical bonds</subject><subject>Complexity</subject><subject>conformational isomerism</subject><subject>Crystal structure</subject><subject>Crystals</subject><subject>Helices</subject><subject>helix</subject><subject>high‐Z′ structure</subject><subject>Hydrogen bonding</subject><subject>Nitric oxide</subject><subject>Nitrobenzene</subject><subject>Nitrogen dioxide</subject><subject>orthogonal nitro…C interaction</subject><subject>orthogonal nitro…N interaction</subject><subject>snapshot conformer</subject><subject>Structural analysis</subject><issn>2053-2296</issn><issn>0108-2701</issn><issn>2053-2296</issn><issn>1600-5759</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2018</creationdate><recordtype>article</recordtype><sourceid>24P</sourceid><recordid>eNplUU1u1DAUjhBIVG0PwM4Sm1bqFD974kkWLEYR0IpqZgFdsIqc5IVxSexgu1PS1RyBBWfgOtyhF-AKvExZILF5P9_32e-zX5K8AH4OwBevPgieSiFyBRnncs7Vk-RggmYT9vSf-nlyHMIN5xxApIsFHCS_L-3WdVvs0UbmWlY72zrf62ic1R0zwfXoTeiZsSxukPh-6PCbieOk3iN-DJGkFuOd818mGB5230_mFKyJ3g0btGN3Si1cTOFMUqzQ3pveNPredcgamrGlmVsMrKESLatGVjzsftCJn0t2smSv2WotzthqGJm2Dfu1O91n5-PGfd57JYrEpNoT69WauiIMgqxH9LqenhSOkmet7gIe_82HyfXbNx-Li9nV-t1lsbyaDaCkmtVSqEYBV1xyPW8y2YqU13kOij5ZQqUhzdKW-FSjrDIQdcMXTZVxkrWqQnmYvHy8d_Du6y2GWN64W082Qym4kJLWBDmp8kfVnelwLAdveu3HEng57bX8b6_l8lMhrt9LmCv5BwZ-oYI</recordid><startdate>201804</startdate><enddate>201804</enddate><creator>García-Aranda, Mónica I.</creator><creator>Gómez-Castro, Carlos Z.</creator><creator>García-Báez, Efrén V.</creator><creator>Gómez, Yolanda Gómez y</creator><creator>Castrejón-Flores, José L.</creator><creator>Padilla-Martínez, Itzia I.</creator><general>International Union of Crystallography</general><general>Wiley Subscription Services, Inc</general><scope>24P</scope><scope>7SR</scope><scope>7U5</scope><scope>8BQ</scope><scope>8FD</scope><scope>JG9</scope><scope>L7M</scope></search><sort><creationdate>201804</creationdate><title>Involvement of conformational isomerism in the complexity of the crystal network of 1‐(4‐nitrophenyl)‐1H‐1,3‐benzimidazole derivatives driven by C—H…A (A = NO2, Npy and π) and orthogonal Npy…NO2 and ONO…Csp2 interactions</title><author>García-Aranda, Mónica I. ; Gómez-Castro, Carlos Z. ; García-Báez, Efrén V. ; Gómez, Yolanda Gómez y ; Castrejón-Flores, José L. ; Padilla-Martínez, Itzia I.</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-p1636-c326d6106030a4d83f250c991696131ba1585f1065ae3b812cd07db80250f6be3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2018</creationdate><topic>Chemical bonds</topic><topic>Complexity</topic><topic>conformational isomerism</topic><topic>Crystal structure</topic><topic>Crystals</topic><topic>Helices</topic><topic>helix</topic><topic>high‐Z′ structure</topic><topic>Hydrogen bonding</topic><topic>Nitric oxide</topic><topic>Nitrobenzene</topic><topic>Nitrogen dioxide</topic><topic>orthogonal nitro…C interaction</topic><topic>orthogonal nitro…N interaction</topic><topic>snapshot conformer</topic><topic>Structural analysis</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>García-Aranda, Mónica I.</creatorcontrib><creatorcontrib>Gómez-Castro, Carlos Z.</creatorcontrib><creatorcontrib>García-Báez, Efrén V.</creatorcontrib><creatorcontrib>Gómez, Yolanda Gómez y</creatorcontrib><creatorcontrib>Castrejón-Flores, José L.</creatorcontrib><creatorcontrib>Padilla-Martínez, Itzia I.</creatorcontrib><collection>Wiley Online Library Open Access</collection><collection>Engineered Materials Abstracts</collection><collection>Solid State and Superconductivity Abstracts</collection><collection>METADEX</collection><collection>Technology Research Database</collection><collection>Materials Research Database</collection><collection>Advanced Technologies Database with Aerospace</collection><jtitle>Acta crystallographica. Section C, Crystal structure communications</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>García-Aranda, Mónica I.</au><au>Gómez-Castro, Carlos Z.</au><au>García-Báez, Efrén V.</au><au>Gómez, Yolanda Gómez y</au><au>Castrejón-Flores, José L.</au><au>Padilla-Martínez, Itzia I.</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Involvement of conformational isomerism in the complexity of the crystal network of 1‐(4‐nitrophenyl)‐1H‐1,3‐benzimidazole derivatives driven by C—H…A (A = NO2, Npy and π) and orthogonal Npy…NO2 and ONO…Csp2 interactions</atitle><jtitle>Acta crystallographica. Section C, Crystal structure communications</jtitle><date>2018-04</date><risdate>2018</risdate><volume>74</volume><issue>4</issue><spage>428</spage><epage>436</epage><pages>428-436</pages><issn>2053-2296</issn><issn>0108-2701</issn><eissn>2053-2296</eissn><eissn>1600-5759</eissn><abstract>A detailed structural analysis of the benzimidazole nitroarenes 1‐(4‐nitrophenyl)‐1H‐1,3‐benzimidazole, C13H9N3O2, (I), 1‐(4‐nitrophenyl)‐2‐phenyl‐1H‐1,3‐benzimidazole, C19H13N3O2, (II), and 2‐(3‐methylphenyl)‐1‐(4‐nitrophenyl)‐1H‐1,3‐benzimidazole, C20H15N3O2, (III), has been performed. They are nonplanar structures whose crystal arrangement is governed by Csp2—H…A (A = NO2, Npy and π) hydrogen bonding. The inherent complexity of the supramolecular arrangements of compounds (I) (Z′ = 2) and (II) (Z′ = 4) into tapes, helices and sheets is the result of the additional participation of π– and n–π* (n = O and Npy; π* = Csp2 and ) interactions that contribute to the stabilization of the equi‐energetic conformations adopted by each of the independent molecules in the asymmetric unit. In contrast, compound (III) (Z′ = 1) is self‐paired, probably due to the effect of the steric demand of the methyl group on the crystal packing. Theoretical ab initio calculations confirmed that the presence of the arene ring at the benzimidazole 2‐position increases the rotational barrier of the nitrobenzene ring and also supports the electrostatic nature of the orthogonal ONO…Csp2 and Npy…NO2 interactions.
Participation of π– and n–π* (n = O and Npy; π* = Csp2 and ) interactions in the equi‐energetic conformations of 1‐(4‐nitrophenyl)‐1H‐1,3‐benzimidazoles.</abstract><cop>5 Abbey Square, Chester, Cheshire CH1 2HU, England</cop><pub>International Union of Crystallography</pub><doi>10.1107/S2053229618003406</doi><tpages>8</tpages><oa>free_for_read</oa></addata></record> |
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subjects | Chemical bonds Complexity conformational isomerism Crystal structure Crystals Helices helix high‐Z′ structure Hydrogen bonding Nitric oxide Nitrobenzene Nitrogen dioxide orthogonal nitro…C interaction orthogonal nitro…N interaction snapshot conformer Structural analysis |
title | Involvement of conformational isomerism in the complexity of the crystal network of 1‐(4‐nitrophenyl)‐1H‐1,3‐benzimidazole derivatives driven by C—H…A (A = NO2, Npy and π) and orthogonal Npy…NO2 and ONO…Csp2 interactions |
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