Involvement of conformational isomerism in the complexity of the crystal network of 1‐(4‐nitrophenyl)‐1H‐1,3‐benzimidazole derivatives driven by C—H…A (A = NO2, Npy and π) and orthogonal Npy…NO2 and ONO…Csp2 interactions

A detailed structural analysis of the benzimidazole nitroarenes 1‐(4‐nitrophenyl)‐1H‐1,3‐benzimidazole, C13H9N3O2, (I), 1‐(4‐nitrophenyl)‐2‐phenyl‐1H‐1,3‐benzimidazole, C19H13N3O2, (II), and 2‐(3‐methylphenyl)‐1‐(4‐nitrophenyl)‐1H‐1,3‐benzimidazole, C20H15N3O2, (III), has been performed. They are no...

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Veröffentlicht in:Acta crystallographica. Section C, Crystal structure communications Crystal structure communications, 2018-04, Vol.74 (4), p.428-436
Hauptverfasser: García-Aranda, Mónica I., Gómez-Castro, Carlos Z., García-Báez, Efrén V., Gómez, Yolanda Gómez y, Castrejón-Flores, José L., Padilla-Martínez, Itzia I.
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container_issue 4
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container_title Acta crystallographica. Section C, Crystal structure communications
container_volume 74
creator García-Aranda, Mónica I.
Gómez-Castro, Carlos Z.
García-Báez, Efrén V.
Gómez, Yolanda Gómez y
Castrejón-Flores, José L.
Padilla-Martínez, Itzia I.
description A detailed structural analysis of the benzimidazole nitroarenes 1‐(4‐nitrophenyl)‐1H‐1,3‐benzimidazole, C13H9N3O2, (I), 1‐(4‐nitrophenyl)‐2‐phenyl‐1H‐1,3‐benzimidazole, C19H13N3O2, (II), and 2‐(3‐methylphenyl)‐1‐(4‐nitrophenyl)‐1H‐1,3‐benzimidazole, C20H15N3O2, (III), has been performed. They are nonplanar structures whose crystal arrangement is governed by Csp2—H…A (A = NO2, Npy and π) hydrogen bonding. The inherent complexity of the supramolecular arrangements of compounds (I) (Z′ = 2) and (II) (Z′ = 4) into tapes, helices and sheets is the result of the additional participation of π– and n–π* (n = O and Npy; π* = Csp2 and ) interactions that contribute to the stabilization of the equi‐energetic conformations adopted by each of the independent molecules in the asymmetric unit. In contrast, compound (III) (Z′ = 1) is self‐paired, probably due to the effect of the steric demand of the methyl group on the crystal packing. Theoretical ab initio calculations confirmed that the presence of the arene ring at the benzimidazole 2‐position increases the rotational barrier of the nitrobenzene ring and also supports the electrostatic nature of the orthogonal ONO…Csp2 and Npy…NO2 interactions. Participation of π– and n–π* (n = O and Npy; π* = Csp2 and ) interactions in the equi‐energetic conformations of 1‐(4‐nitrophenyl)‐1H‐1,3‐benzimidazoles.
doi_str_mv 10.1107/S2053229618003406
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They are nonplanar structures whose crystal arrangement is governed by Csp2—H…A (A = NO2, Npy and π) hydrogen bonding. The inherent complexity of the supramolecular arrangements of compounds (I) (Z′ = 2) and (II) (Z′ = 4) into tapes, helices and sheets is the result of the additional participation of π– and n–π* (n = O and Npy; π* = Csp2 and ) interactions that contribute to the stabilization of the equi‐energetic conformations adopted by each of the independent molecules in the asymmetric unit. In contrast, compound (III) (Z′ = 1) is self‐paired, probably due to the effect of the steric demand of the methyl group on the crystal packing. Theoretical ab initio calculations confirmed that the presence of the arene ring at the benzimidazole 2‐position increases the rotational barrier of the nitrobenzene ring and also supports the electrostatic nature of the orthogonal ONO…Csp2 and Npy…NO2 interactions. 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Section C, Crystal structure communications</title><description>A detailed structural analysis of the benzimidazole nitroarenes 1‐(4‐nitrophenyl)‐1H‐1,3‐benzimidazole, C13H9N3O2, (I), 1‐(4‐nitrophenyl)‐2‐phenyl‐1H‐1,3‐benzimidazole, C19H13N3O2, (II), and 2‐(3‐methylphenyl)‐1‐(4‐nitrophenyl)‐1H‐1,3‐benzimidazole, C20H15N3O2, (III), has been performed. They are nonplanar structures whose crystal arrangement is governed by Csp2—H…A (A = NO2, Npy and π) hydrogen bonding. The inherent complexity of the supramolecular arrangements of compounds (I) (Z′ = 2) and (II) (Z′ = 4) into tapes, helices and sheets is the result of the additional participation of π– and n–π* (n = O and Npy; π* = Csp2 and ) interactions that contribute to the stabilization of the equi‐energetic conformations adopted by each of the independent molecules in the asymmetric unit. In contrast, compound (III) (Z′ = 1) is self‐paired, probably due to the effect of the steric demand of the methyl group on the crystal packing. Theoretical ab initio calculations confirmed that the presence of the arene ring at the benzimidazole 2‐position increases the rotational barrier of the nitrobenzene ring and also supports the electrostatic nature of the orthogonal ONO…Csp2 and Npy…NO2 interactions. Participation of π– and n–π* (n = O and Npy; π* = Csp2 and ) interactions in the equi‐energetic conformations of 1‐(4‐nitrophenyl)‐1H‐1,3‐benzimidazoles.</description><subject>Chemical bonds</subject><subject>Complexity</subject><subject>conformational isomerism</subject><subject>Crystal structure</subject><subject>Crystals</subject><subject>Helices</subject><subject>helix</subject><subject>high‐Z′ structure</subject><subject>Hydrogen bonding</subject><subject>Nitric oxide</subject><subject>Nitrobenzene</subject><subject>Nitrogen dioxide</subject><subject>orthogonal nitro…C interaction</subject><subject>orthogonal nitro…N interaction</subject><subject>snapshot conformer</subject><subject>Structural analysis</subject><issn>2053-2296</issn><issn>0108-2701</issn><issn>2053-2296</issn><issn>1600-5759</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2018</creationdate><recordtype>article</recordtype><sourceid>24P</sourceid><recordid>eNplUU1u1DAUjhBIVG0PwM4Sm1bqFD974kkWLEYR0IpqZgFdsIqc5IVxSexgu1PS1RyBBWfgOtyhF-AKvExZILF5P9_32e-zX5K8AH4OwBevPgieSiFyBRnncs7Vk-RggmYT9vSf-nlyHMIN5xxApIsFHCS_L-3WdVvs0UbmWlY72zrf62ic1R0zwfXoTeiZsSxukPh-6PCbieOk3iN-DJGkFuOd818mGB5230_mFKyJ3g0btGN3Si1cTOFMUqzQ3pveNPredcgamrGlmVsMrKESLatGVjzsftCJn0t2smSv2WotzthqGJm2Dfu1O91n5-PGfd57JYrEpNoT69WauiIMgqxH9LqenhSOkmet7gIe_82HyfXbNx-Li9nV-t1lsbyaDaCkmtVSqEYBV1xyPW8y2YqU13kOij5ZQqUhzdKW-FSjrDIQdcMXTZVxkrWqQnmYvHy8d_Du6y2GWN64W082Qym4kJLWBDmp8kfVnelwLAdveu3HEng57bX8b6_l8lMhrt9LmCv5BwZ-oYI</recordid><startdate>201804</startdate><enddate>201804</enddate><creator>García-Aranda, Mónica I.</creator><creator>Gómez-Castro, Carlos Z.</creator><creator>García-Báez, Efrén V.</creator><creator>Gómez, Yolanda Gómez y</creator><creator>Castrejón-Flores, José L.</creator><creator>Padilla-Martínez, Itzia I.</creator><general>International Union of Crystallography</general><general>Wiley Subscription Services, Inc</general><scope>24P</scope><scope>7SR</scope><scope>7U5</scope><scope>8BQ</scope><scope>8FD</scope><scope>JG9</scope><scope>L7M</scope></search><sort><creationdate>201804</creationdate><title>Involvement of conformational isomerism in the complexity of the crystal network of 1‐(4‐nitrophenyl)‐1H‐1,3‐benzimidazole derivatives driven by C—H…A (A = NO2, Npy and π) and orthogonal Npy…NO2 and ONO…Csp2 interactions</title><author>García-Aranda, Mónica I. ; Gómez-Castro, Carlos Z. ; García-Báez, Efrén V. ; Gómez, Yolanda Gómez y ; Castrejón-Flores, José L. ; Padilla-Martínez, Itzia I.</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-p1636-c326d6106030a4d83f250c991696131ba1585f1065ae3b812cd07db80250f6be3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2018</creationdate><topic>Chemical bonds</topic><topic>Complexity</topic><topic>conformational isomerism</topic><topic>Crystal structure</topic><topic>Crystals</topic><topic>Helices</topic><topic>helix</topic><topic>high‐Z′ structure</topic><topic>Hydrogen bonding</topic><topic>Nitric oxide</topic><topic>Nitrobenzene</topic><topic>Nitrogen dioxide</topic><topic>orthogonal nitro…C interaction</topic><topic>orthogonal nitro…N interaction</topic><topic>snapshot conformer</topic><topic>Structural analysis</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>García-Aranda, Mónica I.</creatorcontrib><creatorcontrib>Gómez-Castro, Carlos Z.</creatorcontrib><creatorcontrib>García-Báez, Efrén V.</creatorcontrib><creatorcontrib>Gómez, Yolanda Gómez y</creatorcontrib><creatorcontrib>Castrejón-Flores, José L.</creatorcontrib><creatorcontrib>Padilla-Martínez, Itzia I.</creatorcontrib><collection>Wiley Online Library Open Access</collection><collection>Engineered Materials Abstracts</collection><collection>Solid State and Superconductivity Abstracts</collection><collection>METADEX</collection><collection>Technology Research Database</collection><collection>Materials Research Database</collection><collection>Advanced Technologies Database with Aerospace</collection><jtitle>Acta crystallographica. 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Section C, Crystal structure communications</jtitle><date>2018-04</date><risdate>2018</risdate><volume>74</volume><issue>4</issue><spage>428</spage><epage>436</epage><pages>428-436</pages><issn>2053-2296</issn><issn>0108-2701</issn><eissn>2053-2296</eissn><eissn>1600-5759</eissn><abstract>A detailed structural analysis of the benzimidazole nitroarenes 1‐(4‐nitrophenyl)‐1H‐1,3‐benzimidazole, C13H9N3O2, (I), 1‐(4‐nitrophenyl)‐2‐phenyl‐1H‐1,3‐benzimidazole, C19H13N3O2, (II), and 2‐(3‐methylphenyl)‐1‐(4‐nitrophenyl)‐1H‐1,3‐benzimidazole, C20H15N3O2, (III), has been performed. They are nonplanar structures whose crystal arrangement is governed by Csp2—H…A (A = NO2, Npy and π) hydrogen bonding. The inherent complexity of the supramolecular arrangements of compounds (I) (Z′ = 2) and (II) (Z′ = 4) into tapes, helices and sheets is the result of the additional participation of π– and n–π* (n = O and Npy; π* = Csp2 and ) interactions that contribute to the stabilization of the equi‐energetic conformations adopted by each of the independent molecules in the asymmetric unit. In contrast, compound (III) (Z′ = 1) is self‐paired, probably due to the effect of the steric demand of the methyl group on the crystal packing. Theoretical ab initio calculations confirmed that the presence of the arene ring at the benzimidazole 2‐position increases the rotational barrier of the nitrobenzene ring and also supports the electrostatic nature of the orthogonal ONO…Csp2 and Npy…NO2 interactions. Participation of π– and n–π* (n = O and Npy; π* = Csp2 and ) interactions in the equi‐energetic conformations of 1‐(4‐nitrophenyl)‐1H‐1,3‐benzimidazoles.</abstract><cop>5 Abbey Square, Chester, Cheshire CH1 2HU, England</cop><pub>International Union of Crystallography</pub><doi>10.1107/S2053229618003406</doi><tpages>8</tpages><oa>free_for_read</oa></addata></record>
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source Wiley Online Library Journals Frontfile Complete; Alma/SFX Local Collection
subjects Chemical bonds
Complexity
conformational isomerism
Crystal structure
Crystals
Helices
helix
high‐Z′ structure
Hydrogen bonding
Nitric oxide
Nitrobenzene
Nitrogen dioxide
orthogonal nitro…C interaction
orthogonal nitro…N interaction
snapshot conformer
Structural analysis
title Involvement of conformational isomerism in the complexity of the crystal network of 1‐(4‐nitrophenyl)‐1H‐1,3‐benzimidazole derivatives driven by C—H…A (A = NO2, Npy and π) and orthogonal Npy…NO2 and ONO…Csp2 interactions
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