Mechanical limits of viral capsids
We studied the elastic properties and mechanical stability of viral capsids under external force-loading with computer simulations. Our approach allows the implementation of specific geometries corresponding to specific phages, such as φ29 and cowpea chlorotic mottle virus. We demonstrate how, in a...
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Veröffentlicht in: | Proceedings of the National Academy of Sciences - PNAS 2007-06, Vol.104 (24), p.9925-9930 |
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description | We studied the elastic properties and mechanical stability of viral capsids under external force-loading with computer simulations. Our approach allows the implementation of specific geometries corresponding to specific phages, such as φ29 and cowpea chlorotic mottle virus. We demonstrate how, in a combined numerical and experimental approach, the elastic parameters can be determined with high precision. The experimentally observed bimodality of elastic spring constants is shown to be of geometrical origin, namely the presence of pentavalent units in the viral shell. We define a criterion for capsid breakage that explains well the experimentally observed rupture. From our numerics we find a crossover from γ²/³ to γ¹/² for the dependence of the rupture force on the Föppl-von Kármán number, γ. For filled capsids, high internal pressures lead to a stronger destabilization for viruses with buckled ground states versus viruses with unbuckled ground states. Finally, we show how our numerically calculated energy maps can be used to extract information about the strength of protein-protein interactions from rupture experiments. |
doi_str_mv | 10.1073/pnas.0611472104 |
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Our approach allows the implementation of specific geometries corresponding to specific phages, such as φ29 and cowpea chlorotic mottle virus. We demonstrate how, in a combined numerical and experimental approach, the elastic parameters can be determined with high precision. The experimentally observed bimodality of elastic spring constants is shown to be of geometrical origin, namely the presence of pentavalent units in the viral shell. We define a criterion for capsid breakage that explains well the experimentally observed rupture. From our numerics we find a crossover from γ²/³ to γ¹/² for the dependence of the rupture force on the Föppl-von Kármán number, γ. For filled capsids, high internal pressures lead to a stronger destabilization for viruses with buckled ground states versus viruses with unbuckled ground states. 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Our approach allows the implementation of specific geometries corresponding to specific phages, such as φ29 and cowpea chlorotic mottle virus. We demonstrate how, in a combined numerical and experimental approach, the elastic parameters can be determined with high precision. The experimentally observed bimodality of elastic spring constants is shown to be of geometrical origin, namely the presence of pentavalent units in the viral shell. We define a criterion for capsid breakage that explains well the experimentally observed rupture. From our numerics we find a crossover from γ²/³ to γ¹/² for the dependence of the rupture force on the Föppl-von Kármán number, γ. For filled capsids, high internal pressures lead to a stronger destabilization for viruses with buckled ground states versus viruses with unbuckled ground states. Finally, we show how our numerically calculated energy maps can be used to extract information about the strength of protein-protein interactions from rupture experiments.</description><subject>Bacteriophages</subject><subject>Bending</subject><subject>Capsid</subject><subject>Capsid - chemistry</subject><subject>Computer Simulation</subject><subject>Cowpea chlorotic mottle virus</subject><subject>DNA</subject><subject>Elastic shells</subject><subject>Elasticity</subject><subject>Experiments</subject><subject>Geometry</subject><subject>Internal pressure</subject><subject>Models, Biological</subject><subject>Osmotic Pressure</subject><subject>Physical Sciences</subject><subject>Proteins</subject><subject>Spring constant</subject><subject>Stress, Mechanical</subject><subject>Vertices</subject><subject>Virology</subject><subject>Virus Physiological Phenomena</subject><subject>Viruses</subject><subject>Viruses - chemistry</subject><issn>0027-8424</issn><issn>1091-6490</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2007</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNqFkc9PFDEUxxujkQU9exI3HIiXgddf89oLiSGgJhgPyrnpdDrQzex0aWeI_Pd0sxtWOeClP9LP-77v65eQDxROKCA_XQ02n0BNqUBGQbwiMwqaVrXQ8JrMABhWSjCxR_ZzXgCAlgrekj2KUkgOekaOfnh3a4fgbD_vwzKMeR67-X1I5e7sKoc2vyNvOttn_367H5Dry4vf59-qq59fv59_uapcTdVYSe-BteUokErKa4RaAShWFs5qaJkHRI9aYqtbh41rGq8UInQNdhqRH5Czje5qapa-dX4YiwuzSmFp04OJNph_X4Zwa27ivaFKU8agCBxvBVK8m3wezTJk5_veDj5O2RRHDBn8H2TAdK2pKuDRM3ARpzSUXygM5SgEiAKdbiCXYs7Jd0-WKZh1SmadktmlVCoO_550x29jKcCnLbCu3MkJw4TRmslCfH6ZMN3U96P_Mxb04wZd5DGmJ5ZJwaWqYdess9HYmxSyuf61Hg8AFUdF-SM7yrXK</recordid><startdate>20070612</startdate><enddate>20070612</enddate><creator>Buenemann, Mathias</creator><creator>Lenz, Peter</creator><general>National Academy of Sciences</general><general>National Acad Sciences</general><scope>FBQ</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7QG</scope><scope>7QL</scope><scope>7QP</scope><scope>7QR</scope><scope>7SN</scope><scope>7SS</scope><scope>7T5</scope><scope>7TK</scope><scope>7TM</scope><scope>7TO</scope><scope>7U9</scope><scope>8FD</scope><scope>C1K</scope><scope>FR3</scope><scope>H94</scope><scope>M7N</scope><scope>P64</scope><scope>RC3</scope><scope>7X8</scope><scope>5PM</scope></search><sort><creationdate>20070612</creationdate><title>Mechanical limits of viral capsids</title><author>Buenemann, Mathias ; 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Our approach allows the implementation of specific geometries corresponding to specific phages, such as φ29 and cowpea chlorotic mottle virus. We demonstrate how, in a combined numerical and experimental approach, the elastic parameters can be determined with high precision. The experimentally observed bimodality of elastic spring constants is shown to be of geometrical origin, namely the presence of pentavalent units in the viral shell. We define a criterion for capsid breakage that explains well the experimentally observed rupture. From our numerics we find a crossover from γ²/³ to γ¹/² for the dependence of the rupture force on the Föppl-von Kármán number, γ. For filled capsids, high internal pressures lead to a stronger destabilization for viruses with buckled ground states versus viruses with unbuckled ground states. Finally, we show how our numerically calculated energy maps can be used to extract information about the strength of protein-protein interactions from rupture experiments.</abstract><cop>United States</cop><pub>National Academy of Sciences</pub><pmid>17545309</pmid><doi>10.1073/pnas.0611472104</doi><tpages>6</tpages><oa>free_for_read</oa></addata></record> |
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subjects | Bacteriophages Bending Capsid Capsid - chemistry Computer Simulation Cowpea chlorotic mottle virus DNA Elastic shells Elasticity Experiments Geometry Internal pressure Models, Biological Osmotic Pressure Physical Sciences Proteins Spring constant Stress, Mechanical Vertices Virology Virus Physiological Phenomena Viruses Viruses - chemistry |
title | Mechanical limits of viral capsids |
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