Thiolate-bridged dinuclear iron(tris-carbonyl)-nickel complexes relevant to the active site of [NiFe] hydrogenase
The reaction of NiBr₂(EtOH)₄ with a 1:2-3 mixture of FeBr₂(CO)₄ and Na(SPh) generated a linear trinuclear Fe-Ni-Fe cluster (CO)₃Fe(μ-SPh)₃Ni(μ-SPh)₃Fe(CO)₃, 1, whereas the analogous reaction system FeBr₂(CO)₄/Na(StBu)/NiBr₂(EtOH)₄ (1:2-3:1) gave rise to a linear tetranuclear Fe-Ni-Ni-Fe cluster [(CO...
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creator | Ohki, Yasuhiro Yasumura, Kazunari Kuge, Katsuaki Tanino, Soichiro Ando, Masaru Li, Zilong Tatsumi, Kazuyuki |
description | The reaction of NiBr₂(EtOH)₄ with a 1:2-3 mixture of FeBr₂(CO)₄ and Na(SPh) generated a linear trinuclear Fe-Ni-Fe cluster (CO)₃Fe(μ-SPh)₃Ni(μ-SPh)₃Fe(CO)₃, 1, whereas the analogous reaction system FeBr₂(CO)₄/Na(StBu)/NiBr₂(EtOH)₄ (1:2-3:1) gave rise to a linear tetranuclear Fe-Ni-Ni-Fe cluster [(CO)₃Fe(μ-StBu)₃Ni(μ-Br)]₂, 2. By using this tetranuclear cluster 2 as the precursor, we have developed a new synthetic route to a series of thiolate-bridged dinuclear Fe(CO)₃-Ni complexes, the structures of which mimic [NiFe] hydrogenase active sites. The reactions of 2 with SC(NMe₂)₂ (tmtu), Na{S(CH₂)₂SMe} and ortho-NaS(C₆H₄)SR (R = Me, tBu) led to isolation of (CO)₃Fe(μ-StBu)₃NiBr(tmtu), 3, (CO)₃Fe(StBu)(μ-StBu)₂Ni{S(CH₂)₂SMe}, 4, and (CO)₃Fe(StBu)(μ-StBu)₂Ni{S(C₆H₄)SR}, 5a (R = Me) and 5b (R = tBu), respectively. On the other hand, treatment of 2 with 2-methylthio-phenolate (ortho-O(C₆H₄)SMe) in methanol resulted in (CO)₃Fe(μ-StBu)₃Ni(MeOH){O(C₆H₄)SMe}, 6a. The methanol molecule bound to Ni is labile and is readily released under reduced pressure to afford (CO)₃Fe(StBu)(μ-StBu)₂Ni{O(C₆H₄)SMe}, 6b, and the coordination geometry of nickel changes from octahedral to square planar. Likewise, the reaction of 2 with NaOAc in methanol followed by crystallization from THF gave (CO)₃Fe(μ-StBu)₃Ni(THF)(OAc), 7. The dinuclear complexes, 3-7, are thermally unstable, and a key to their successful isolation is to carry out the reactions and manipulations at -40°C. |
doi_str_mv | 10.1073/pnas.0800538105 |
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By using this tetranuclear cluster 2 as the precursor, we have developed a new synthetic route to a series of thiolate-bridged dinuclear Fe(CO)₃-Ni complexes, the structures of which mimic [NiFe] hydrogenase active sites. The reactions of 2 with SC(NMe₂)₂ (tmtu), Na{S(CH₂)₂SMe} and ortho-NaS(C₆H₄)SR (R = Me, tBu) led to isolation of (CO)₃Fe(μ-StBu)₃NiBr(tmtu), 3, (CO)₃Fe(StBu)(μ-StBu)₂Ni{S(CH₂)₂SMe}, 4, and (CO)₃Fe(StBu)(μ-StBu)₂Ni{S(C₆H₄)SR}, 5a (R = Me) and 5b (R = tBu), respectively. On the other hand, treatment of 2 with 2-methylthio-phenolate (ortho-O(C₆H₄)SMe) in methanol resulted in (CO)₃Fe(μ-StBu)₃Ni(MeOH){O(C₆H₄)SMe}, 6a. The methanol molecule bound to Ni is labile and is readily released under reduced pressure to afford (CO)₃Fe(StBu)(μ-StBu)₂Ni{O(C₆H₄)SMe}, 6b, and the coordination geometry of nickel changes from octahedral to square planar. Likewise, the reaction of 2 with NaOAc in methanol followed by crystallization from THF gave (CO)₃Fe(μ-StBu)₃Ni(THF)(OAc), 7. The dinuclear complexes, 3-7, are thermally unstable, and a key to their successful isolation is to carry out the reactions and manipulations at -40°C.</description><identifier>ISSN: 0027-8424</identifier><identifier>EISSN: 1091-6490</identifier><identifier>DOI: 10.1073/pnas.0800538105</identifier><identifier>PMID: 18511566</identifier><language>eng</language><publisher>United States: National Academy of Sciences</publisher><subject>Active sites ; Atoms ; Binding Sites ; Catalysis ; Chemical reactions ; Ferric Compounds - chemical synthesis ; Ferric Compounds - chemistry ; Geometry ; Hydrogenase - chemistry ; Hydrogenases ; Infrared radiation ; Iron ; Ligands ; Molecular Structure ; Molecules ; Nickel ; Nickel - chemistry ; Organometallic Compounds - chemical synthesis ; Organometallic Compounds - chemistry ; Physical Sciences ; Protons ; Squares ; Sulfhydryl Compounds - chemical synthesis ; Sulfhydryl Compounds - chemistry ; Sulfur</subject><ispartof>Proceedings of the National Academy of Sciences - PNAS, 2008-06, Vol.105 (22), p.7652-7657</ispartof><rights>Copyright 2008 The National Academy of Sciences of the United States of America</rights><rights>Copyright National Academy of Sciences Jun 3, 2008</rights><rights>2008 by The National Academy of Sciences of the USA</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c618t-ae0d39686cbc4fe727b84e680abfda49f916056a2664532f8a9857023827ff3</citedby><cites>FETCH-LOGICAL-c618t-ae0d39686cbc4fe727b84e680abfda49f916056a2664532f8a9857023827ff3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Uhttp://www.pnas.org/content/105/22.cover.gif</thumbnail><linktopdf>$$Uhttps://www.jstor.org/stable/pdf/25462657$$EPDF$$P50$$Gjstor$$H</linktopdf><linktohtml>$$Uhttps://www.jstor.org/stable/25462657$$EHTML$$P50$$Gjstor$$H</linktohtml><link.rule.ids>230,314,723,776,780,799,881,27903,27904,53770,53772,57996,58229</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/18511566$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Ohki, Yasuhiro</creatorcontrib><creatorcontrib>Yasumura, Kazunari</creatorcontrib><creatorcontrib>Kuge, Katsuaki</creatorcontrib><creatorcontrib>Tanino, Soichiro</creatorcontrib><creatorcontrib>Ando, Masaru</creatorcontrib><creatorcontrib>Li, Zilong</creatorcontrib><creatorcontrib>Tatsumi, Kazuyuki</creatorcontrib><title>Thiolate-bridged dinuclear iron(tris-carbonyl)-nickel complexes relevant to the active site of [NiFe] hydrogenase</title><title>Proceedings of the National Academy of Sciences - PNAS</title><addtitle>Proc Natl Acad Sci U S A</addtitle><description>The reaction of NiBr₂(EtOH)₄ with a 1:2-3 mixture of FeBr₂(CO)₄ and Na(SPh) generated a linear trinuclear Fe-Ni-Fe cluster (CO)₃Fe(μ-SPh)₃Ni(μ-SPh)₃Fe(CO)₃, 1, whereas the analogous reaction system FeBr₂(CO)₄/Na(StBu)/NiBr₂(EtOH)₄ (1:2-3:1) gave rise to a linear tetranuclear Fe-Ni-Ni-Fe cluster [(CO)₃Fe(μ-StBu)₃Ni(μ-Br)]₂, 2. By using this tetranuclear cluster 2 as the precursor, we have developed a new synthetic route to a series of thiolate-bridged dinuclear Fe(CO)₃-Ni complexes, the structures of which mimic [NiFe] hydrogenase active sites. The reactions of 2 with SC(NMe₂)₂ (tmtu), Na{S(CH₂)₂SMe} and ortho-NaS(C₆H₄)SR (R = Me, tBu) led to isolation of (CO)₃Fe(μ-StBu)₃NiBr(tmtu), 3, (CO)₃Fe(StBu)(μ-StBu)₂Ni{S(CH₂)₂SMe}, 4, and (CO)₃Fe(StBu)(μ-StBu)₂Ni{S(C₆H₄)SR}, 5a (R = Me) and 5b (R = tBu), respectively. On the other hand, treatment of 2 with 2-methylthio-phenolate (ortho-O(C₆H₄)SMe) in methanol resulted in (CO)₃Fe(μ-StBu)₃Ni(MeOH){O(C₆H₄)SMe}, 6a. The methanol molecule bound to Ni is labile and is readily released under reduced pressure to afford (CO)₃Fe(StBu)(μ-StBu)₂Ni{O(C₆H₄)SMe}, 6b, and the coordination geometry of nickel changes from octahedral to square planar. Likewise, the reaction of 2 with NaOAc in methanol followed by crystallization from THF gave (CO)₃Fe(μ-StBu)₃Ni(THF)(OAc), 7. The dinuclear complexes, 3-7, are thermally unstable, and a key to their successful isolation is to carry out the reactions and manipulations at -40°C.</description><subject>Active sites</subject><subject>Atoms</subject><subject>Binding Sites</subject><subject>Catalysis</subject><subject>Chemical reactions</subject><subject>Ferric Compounds - chemical synthesis</subject><subject>Ferric Compounds - chemistry</subject><subject>Geometry</subject><subject>Hydrogenase - chemistry</subject><subject>Hydrogenases</subject><subject>Infrared radiation</subject><subject>Iron</subject><subject>Ligands</subject><subject>Molecular Structure</subject><subject>Molecules</subject><subject>Nickel</subject><subject>Nickel - chemistry</subject><subject>Organometallic Compounds - chemical synthesis</subject><subject>Organometallic Compounds - chemistry</subject><subject>Physical Sciences</subject><subject>Protons</subject><subject>Squares</subject><subject>Sulfhydryl Compounds - chemical synthesis</subject><subject>Sulfhydryl Compounds - chemistry</subject><subject>Sulfur</subject><issn>0027-8424</issn><issn>1091-6490</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2008</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNqFks9rFDEUxwdRbK2ePanBg9TDtEkmv-YiSLEqFD20nkRCJvNmN2t2sk0yS_e_N8suXfWgEMghn_fhvXxfVT0n-Ixg2ZyvRpPOsMKYN4pg_qA6JrgltWAtflgdY0xlrRhlR9WTlBYY45Yr_Lg6IooTwoU4rm5v5i54k6Huoutn0KPejZP1YCJyMYynObpUWxO7MG7823p09id4ZMNy5eEOEorgYW3GjHJAeQ7I2OzWgJLLgMKAvn9xl_ADzTd9DDMo3cLT6tFgfIJn-_ukur78cHPxqb76-vHzxfur2gqicm0A900rlLCdZQNIKjvFQChsuqE3rB1aIjAXhgrBeEMHZVrFJaaNonIYmpPq3c66mrol9BbGHI3Xq-iWJm50ME7_-TK6uZ6FtaYMt-UUwZu9IIbbCVLWS5cseG9GCFPSkgjGZEP-C1IsVSPE1vj6L3ARpjiWPygMaWhbwinQ-Q6yMaQUYbhvmWC9jVxvI9eHyEvFy98nPfD7jAtwuge2lQcd15RqKTjVw-R9hrtc0Ff_RgvxYkcsUg7xHqGcCSq4PBgGE7SZleXR366345Xdw7SVrPkFplrUDg</recordid><startdate>20080603</startdate><enddate>20080603</enddate><creator>Ohki, Yasuhiro</creator><creator>Yasumura, Kazunari</creator><creator>Kuge, Katsuaki</creator><creator>Tanino, Soichiro</creator><creator>Ando, Masaru</creator><creator>Li, Zilong</creator><creator>Tatsumi, Kazuyuki</creator><general>National Academy of Sciences</general><general>National Acad Sciences</general><scope>FBQ</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7QG</scope><scope>7QL</scope><scope>7QP</scope><scope>7QR</scope><scope>7SN</scope><scope>7SS</scope><scope>7T5</scope><scope>7TK</scope><scope>7TM</scope><scope>7TO</scope><scope>7U9</scope><scope>8FD</scope><scope>C1K</scope><scope>FR3</scope><scope>H94</scope><scope>M7N</scope><scope>P64</scope><scope>RC3</scope><scope>7X8</scope><scope>5PM</scope></search><sort><creationdate>20080603</creationdate><title>Thiolate-bridged dinuclear iron(tris-carbonyl)-nickel complexes relevant to the active site of [NiFe] hydrogenase</title><author>Ohki, Yasuhiro ; Yasumura, Kazunari ; Kuge, Katsuaki ; Tanino, Soichiro ; Ando, Masaru ; Li, Zilong ; Tatsumi, Kazuyuki</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c618t-ae0d39686cbc4fe727b84e680abfda49f916056a2664532f8a9857023827ff3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2008</creationdate><topic>Active sites</topic><topic>Atoms</topic><topic>Binding Sites</topic><topic>Catalysis</topic><topic>Chemical reactions</topic><topic>Ferric Compounds - chemical synthesis</topic><topic>Ferric Compounds - chemistry</topic><topic>Geometry</topic><topic>Hydrogenase - chemistry</topic><topic>Hydrogenases</topic><topic>Infrared radiation</topic><topic>Iron</topic><topic>Ligands</topic><topic>Molecular Structure</topic><topic>Molecules</topic><topic>Nickel</topic><topic>Nickel - chemistry</topic><topic>Organometallic Compounds - chemical synthesis</topic><topic>Organometallic Compounds - chemistry</topic><topic>Physical Sciences</topic><topic>Protons</topic><topic>Squares</topic><topic>Sulfhydryl Compounds - chemical synthesis</topic><topic>Sulfhydryl Compounds - chemistry</topic><topic>Sulfur</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Ohki, Yasuhiro</creatorcontrib><creatorcontrib>Yasumura, Kazunari</creatorcontrib><creatorcontrib>Kuge, Katsuaki</creatorcontrib><creatorcontrib>Tanino, Soichiro</creatorcontrib><creatorcontrib>Ando, Masaru</creatorcontrib><creatorcontrib>Li, Zilong</creatorcontrib><creatorcontrib>Tatsumi, Kazuyuki</creatorcontrib><collection>AGRIS</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Animal Behavior Abstracts</collection><collection>Bacteriology Abstracts (Microbiology B)</collection><collection>Calcium & Calcified Tissue Abstracts</collection><collection>Chemoreception Abstracts</collection><collection>Ecology Abstracts</collection><collection>Entomology Abstracts (Full archive)</collection><collection>Immunology Abstracts</collection><collection>Neurosciences Abstracts</collection><collection>Nucleic Acids Abstracts</collection><collection>Oncogenes and Growth Factors Abstracts</collection><collection>Virology and AIDS Abstracts</collection><collection>Technology Research Database</collection><collection>Environmental Sciences and Pollution Management</collection><collection>Engineering Research Database</collection><collection>AIDS and Cancer Research Abstracts</collection><collection>Algology Mycology and Protozoology Abstracts (Microbiology C)</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Genetics Abstracts</collection><collection>MEDLINE - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><jtitle>Proceedings of the National Academy of Sciences - PNAS</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Ohki, Yasuhiro</au><au>Yasumura, Kazunari</au><au>Kuge, Katsuaki</au><au>Tanino, Soichiro</au><au>Ando, Masaru</au><au>Li, Zilong</au><au>Tatsumi, Kazuyuki</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Thiolate-bridged dinuclear iron(tris-carbonyl)-nickel complexes relevant to the active site of [NiFe] hydrogenase</atitle><jtitle>Proceedings of the National Academy of Sciences - PNAS</jtitle><addtitle>Proc Natl Acad Sci U S A</addtitle><date>2008-06-03</date><risdate>2008</risdate><volume>105</volume><issue>22</issue><spage>7652</spage><epage>7657</epage><pages>7652-7657</pages><issn>0027-8424</issn><eissn>1091-6490</eissn><abstract>The reaction of NiBr₂(EtOH)₄ with a 1:2-3 mixture of FeBr₂(CO)₄ and Na(SPh) generated a linear trinuclear Fe-Ni-Fe cluster (CO)₃Fe(μ-SPh)₃Ni(μ-SPh)₃Fe(CO)₃, 1, whereas the analogous reaction system FeBr₂(CO)₄/Na(StBu)/NiBr₂(EtOH)₄ (1:2-3:1) gave rise to a linear tetranuclear Fe-Ni-Ni-Fe cluster [(CO)₃Fe(μ-StBu)₃Ni(μ-Br)]₂, 2. By using this tetranuclear cluster 2 as the precursor, we have developed a new synthetic route to a series of thiolate-bridged dinuclear Fe(CO)₃-Ni complexes, the structures of which mimic [NiFe] hydrogenase active sites. The reactions of 2 with SC(NMe₂)₂ (tmtu), Na{S(CH₂)₂SMe} and ortho-NaS(C₆H₄)SR (R = Me, tBu) led to isolation of (CO)₃Fe(μ-StBu)₃NiBr(tmtu), 3, (CO)₃Fe(StBu)(μ-StBu)₂Ni{S(CH₂)₂SMe}, 4, and (CO)₃Fe(StBu)(μ-StBu)₂Ni{S(C₆H₄)SR}, 5a (R = Me) and 5b (R = tBu), respectively. On the other hand, treatment of 2 with 2-methylthio-phenolate (ortho-O(C₆H₄)SMe) in methanol resulted in (CO)₃Fe(μ-StBu)₃Ni(MeOH){O(C₆H₄)SMe}, 6a. The methanol molecule bound to Ni is labile and is readily released under reduced pressure to afford (CO)₃Fe(StBu)(μ-StBu)₂Ni{O(C₆H₄)SMe}, 6b, and the coordination geometry of nickel changes from octahedral to square planar. Likewise, the reaction of 2 with NaOAc in methanol followed by crystallization from THF gave (CO)₃Fe(μ-StBu)₃Ni(THF)(OAc), 7. The dinuclear complexes, 3-7, are thermally unstable, and a key to their successful isolation is to carry out the reactions and manipulations at -40°C.</abstract><cop>United States</cop><pub>National Academy of Sciences</pub><pmid>18511566</pmid><doi>10.1073/pnas.0800538105</doi><tpages>6</tpages><oa>free_for_read</oa></addata></record> |
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subjects | Active sites Atoms Binding Sites Catalysis Chemical reactions Ferric Compounds - chemical synthesis Ferric Compounds - chemistry Geometry Hydrogenase - chemistry Hydrogenases Infrared radiation Iron Ligands Molecular Structure Molecules Nickel Nickel - chemistry Organometallic Compounds - chemical synthesis Organometallic Compounds - chemistry Physical Sciences Protons Squares Sulfhydryl Compounds - chemical synthesis Sulfhydryl Compounds - chemistry Sulfur |
title | Thiolate-bridged dinuclear iron(tris-carbonyl)-nickel complexes relevant to the active site of [NiFe] hydrogenase |
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