Characterization of the rhizosphere microbial community from different Arabidopsis thaliana genotypes using phospholipid fatty acids (PLFA) analysis
Total and culturable rhizosphere microbial communities structure from three different genotypes of Arabidopsis thaliana growing on three different substrates was studied with phospholipid fatty acid analysis (PLFA) and multivariate statistical analyses: correspondence analysis (CA) and distance base...
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| Veröffentlicht in: | Plant and soil 2010-04, Vol.329 (1-2), p.315-325 |
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| creator | Velasco, Ana García-Villaraco Probanza, Agustin Mañero, F. Javier Gutierrez Solano, Beatriz Ramos Lucas, Jose Antonio |
| description | Total and culturable rhizosphere microbial communities structure from three different genotypes of Arabidopsis thaliana growing on three different substrates was studied with phospholipid fatty acid analysis (PLFA) and multivariate statistical analyses: correspondence analysis (CA) and distance based redundancy analyses (db-RDA). In addition, microbial biomass from different groups (total bacteria, Gram+, Gram− and fungi) was calculated from biomarkers PLFA peak area, both from total and culturable microbial community. db-RDA analysis showed significant differences between soils but not between plant genotypes for culturable microbial community structure. Total microbial community was significantly different between soils, and also between plant lines in each soil. Biomass of different bacterial groups showed significant higher values in soil two rhizosphere irrespective of the plant line. In addition, significant differences between plant lines were also found for microbial biomass of different bacterial groups both in total and culturable microbial community. Throughout the work we have demonstrated that PLFA analysis has been able to show a different behaviour of total microbial community with regard to the culturable fraction analyzed in this work under the influence of plant roots. Microbial biomass of different microbial groups calculated with PLFA biomarkers was a suitable tool to detect differences between soils irrespective of the plant line, and differences in the same soil between plant lines. According to this data, a previous study should be carried out before GMPs are used in field conditions to evaluate the potential alterations that may take place on rhizosphere microbial communities structure which may further affect soil productivity. In conclusion, based on data presented in this work, GMPs alter rhizosphere microbial communities structure and this effect is different depending on the soil. Furthermore, total microbial community is affected to a greater extent than the culturable fraction analyzed. |
| doi_str_mv | 10.1007/s11104-009-0160-5 |
| format | Article |
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Javier Gutierrez ; Solano, Beatriz Ramos ; Lucas, Jose Antonio</creator><creatorcontrib>Velasco, Ana García-Villaraco ; Probanza, Agustin ; Mañero, F. Javier Gutierrez ; Solano, Beatriz Ramos ; Lucas, Jose Antonio</creatorcontrib><description>Total and culturable rhizosphere microbial communities structure from three different genotypes of Arabidopsis thaliana growing on three different substrates was studied with phospholipid fatty acid analysis (PLFA) and multivariate statistical analyses: correspondence analysis (CA) and distance based redundancy analyses (db-RDA). In addition, microbial biomass from different groups (total bacteria, Gram+, Gram− and fungi) was calculated from biomarkers PLFA peak area, both from total and culturable microbial community. db-RDA analysis showed significant differences between soils but not between plant genotypes for culturable microbial community structure. Total microbial community was significantly different between soils, and also between plant lines in each soil. Biomass of different bacterial groups showed significant higher values in soil two rhizosphere irrespective of the plant line. In addition, significant differences between plant lines were also found for microbial biomass of different bacterial groups both in total and culturable microbial community. Throughout the work we have demonstrated that PLFA analysis has been able to show a different behaviour of total microbial community with regard to the culturable fraction analyzed in this work under the influence of plant roots. Microbial biomass of different microbial groups calculated with PLFA biomarkers was a suitable tool to detect differences between soils irrespective of the plant line, and differences in the same soil between plant lines. According to this data, a previous study should be carried out before GMPs are used in field conditions to evaluate the potential alterations that may take place on rhizosphere microbial communities structure which may further affect soil productivity. In conclusion, based on data presented in this work, GMPs alter rhizosphere microbial communities structure and this effect is different depending on the soil. Furthermore, total microbial community is affected to a greater extent than the culturable fraction analyzed.</description><identifier>ISSN: 0032-079X</identifier><identifier>EISSN: 1573-5036</identifier><identifier>DOI: 10.1007/s11104-009-0160-5</identifier><identifier>CODEN: PLSOA2</identifier><language>eng</language><publisher>Dordrecht: Dordrecht : Springer Netherlands</publisher><subject>Acid soils ; Agricultural soils ; Agronomy. Soil science and plant productions ; Analysis ; Animal, plant and microbial ecology ; Arabidopsis thaliana ; Bacteria ; Biochemistry and biology ; Biological and medical sciences ; Biomass ; Biomedical and Life Sciences ; Chemical properties ; Chemical, physicochemical, biochemical and biological properties ; Community structure ; Ecology ; Fatty acids ; Forest soils ; Fundamental and applied biological sciences. Psychology ; General agronomy. Plant production ; Genetic aspects ; Genotype ; Genotype & phenotype ; Genotypes ; Life Sciences ; Microbial activity ; Microbiology ; Phospholipids ; Physics, chemistry, biochemistry and biology of agricultural and forest soils ; Plant Physiology ; Plant Sciences ; Regular Article ; Rhizosphere ; Soil bacteria ; Soil biochemistry ; Soil ecology ; Soil fungi ; Soil microorganisms ; Soil productivity ; Soil science ; Soil Science & Conservation ; Soil-plant relationships. Soil fertility ; Soil-plant relationships. Soil fertility. Fertilization. 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Javier Gutierrez</creatorcontrib><creatorcontrib>Solano, Beatriz Ramos</creatorcontrib><creatorcontrib>Lucas, Jose Antonio</creatorcontrib><title>Characterization of the rhizosphere microbial community from different Arabidopsis thaliana genotypes using phospholipid fatty acids (PLFA) analysis</title><title>Plant and soil</title><addtitle>Plant Soil</addtitle><description>Total and culturable rhizosphere microbial communities structure from three different genotypes of Arabidopsis thaliana growing on three different substrates was studied with phospholipid fatty acid analysis (PLFA) and multivariate statistical analyses: correspondence analysis (CA) and distance based redundancy analyses (db-RDA). In addition, microbial biomass from different groups (total bacteria, Gram+, Gram− and fungi) was calculated from biomarkers PLFA peak area, both from total and culturable microbial community. db-RDA analysis showed significant differences between soils but not between plant genotypes for culturable microbial community structure. Total microbial community was significantly different between soils, and also between plant lines in each soil. Biomass of different bacterial groups showed significant higher values in soil two rhizosphere irrespective of the plant line. In addition, significant differences between plant lines were also found for microbial biomass of different bacterial groups both in total and culturable microbial community. Throughout the work we have demonstrated that PLFA analysis has been able to show a different behaviour of total microbial community with regard to the culturable fraction analyzed in this work under the influence of plant roots. Microbial biomass of different microbial groups calculated with PLFA biomarkers was a suitable tool to detect differences between soils irrespective of the plant line, and differences in the same soil between plant lines. According to this data, a previous study should be carried out before GMPs are used in field conditions to evaluate the potential alterations that may take place on rhizosphere microbial communities structure which may further affect soil productivity. In conclusion, based on data presented in this work, GMPs alter rhizosphere microbial communities structure and this effect is different depending on the soil. Furthermore, total microbial community is affected to a greater extent than the culturable fraction analyzed.</description><subject>Acid soils</subject><subject>Agricultural soils</subject><subject>Agronomy. Soil science and plant productions</subject><subject>Analysis</subject><subject>Animal, plant and microbial ecology</subject><subject>Arabidopsis thaliana</subject><subject>Bacteria</subject><subject>Biochemistry and biology</subject><subject>Biological and medical sciences</subject><subject>Biomass</subject><subject>Biomedical and Life Sciences</subject><subject>Chemical properties</subject><subject>Chemical, physicochemical, biochemical and biological properties</subject><subject>Community structure</subject><subject>Ecology</subject><subject>Fatty acids</subject><subject>Forest soils</subject><subject>Fundamental and applied biological sciences. Psychology</subject><subject>General agronomy. Plant production</subject><subject>Genetic aspects</subject><subject>Genotype</subject><subject>Genotype & phenotype</subject><subject>Genotypes</subject><subject>Life Sciences</subject><subject>Microbial activity</subject><subject>Microbiology</subject><subject>Phospholipids</subject><subject>Physics, chemistry, biochemistry and biology of agricultural and forest soils</subject><subject>Plant Physiology</subject><subject>Plant Sciences</subject><subject>Regular Article</subject><subject>Rhizosphere</subject><subject>Soil bacteria</subject><subject>Soil biochemistry</subject><subject>Soil ecology</subject><subject>Soil fungi</subject><subject>Soil microorganisms</subject><subject>Soil productivity</subject><subject>Soil science</subject><subject>Soil Science & Conservation</subject><subject>Soil-plant relationships. Soil fertility</subject><subject>Soil-plant relationships. Soil fertility. Fertilization. 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Soil science and plant productions</topic><topic>Analysis</topic><topic>Animal, plant and microbial ecology</topic><topic>Arabidopsis thaliana</topic><topic>Bacteria</topic><topic>Biochemistry and biology</topic><topic>Biological and medical sciences</topic><topic>Biomass</topic><topic>Biomedical and Life Sciences</topic><topic>Chemical properties</topic><topic>Chemical, physicochemical, biochemical and biological properties</topic><topic>Community structure</topic><topic>Ecology</topic><topic>Fatty acids</topic><topic>Forest soils</topic><topic>Fundamental and applied biological sciences. Psychology</topic><topic>General agronomy. Plant production</topic><topic>Genetic aspects</topic><topic>Genotype</topic><topic>Genotype & phenotype</topic><topic>Genotypes</topic><topic>Life Sciences</topic><topic>Microbial activity</topic><topic>Microbiology</topic><topic>Phospholipids</topic><topic>Physics, chemistry, biochemistry and biology of agricultural and forest soils</topic><topic>Plant Physiology</topic><topic>Plant Sciences</topic><topic>Regular Article</topic><topic>Rhizosphere</topic><topic>Soil bacteria</topic><topic>Soil biochemistry</topic><topic>Soil ecology</topic><topic>Soil fungi</topic><topic>Soil microorganisms</topic><topic>Soil productivity</topic><topic>Soil science</topic><topic>Soil Science & Conservation</topic><topic>Soil-plant relationships. Soil fertility</topic><topic>Soil-plant relationships. Soil fertility. Fertilization. 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Javier Gutierrez</au><au>Solano, Beatriz Ramos</au><au>Lucas, Jose Antonio</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Characterization of the rhizosphere microbial community from different Arabidopsis thaliana genotypes using phospholipid fatty acids (PLFA) analysis</atitle><jtitle>Plant and soil</jtitle><stitle>Plant Soil</stitle><date>2010-04-01</date><risdate>2010</risdate><volume>329</volume><issue>1-2</issue><spage>315</spage><epage>325</epage><pages>315-325</pages><issn>0032-079X</issn><eissn>1573-5036</eissn><coden>PLSOA2</coden><abstract>Total and culturable rhizosphere microbial communities structure from three different genotypes of Arabidopsis thaliana growing on three different substrates was studied with phospholipid fatty acid analysis (PLFA) and multivariate statistical analyses: correspondence analysis (CA) and distance based redundancy analyses (db-RDA). In addition, microbial biomass from different groups (total bacteria, Gram+, Gram− and fungi) was calculated from biomarkers PLFA peak area, both from total and culturable microbial community. db-RDA analysis showed significant differences between soils but not between plant genotypes for culturable microbial community structure. Total microbial community was significantly different between soils, and also between plant lines in each soil. Biomass of different bacterial groups showed significant higher values in soil two rhizosphere irrespective of the plant line. In addition, significant differences between plant lines were also found for microbial biomass of different bacterial groups both in total and culturable microbial community. Throughout the work we have demonstrated that PLFA analysis has been able to show a different behaviour of total microbial community with regard to the culturable fraction analyzed in this work under the influence of plant roots. Microbial biomass of different microbial groups calculated with PLFA biomarkers was a suitable tool to detect differences between soils irrespective of the plant line, and differences in the same soil between plant lines. According to this data, a previous study should be carried out before GMPs are used in field conditions to evaluate the potential alterations that may take place on rhizosphere microbial communities structure which may further affect soil productivity. In conclusion, based on data presented in this work, GMPs alter rhizosphere microbial communities structure and this effect is different depending on the soil. Furthermore, total microbial community is affected to a greater extent than the culturable fraction analyzed.</abstract><cop>Dordrecht</cop><pub>Dordrecht : Springer Netherlands</pub><doi>10.1007/s11104-009-0160-5</doi><tpages>11</tpages></addata></record> |
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| ispartof | Plant and soil, 2010-04, Vol.329 (1-2), p.315-325 |
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| subjects | Acid soils Agricultural soils Agronomy. Soil science and plant productions Analysis Animal, plant and microbial ecology Arabidopsis thaliana Bacteria Biochemistry and biology Biological and medical sciences Biomass Biomedical and Life Sciences Chemical properties Chemical, physicochemical, biochemical and biological properties Community structure Ecology Fatty acids Forest soils Fundamental and applied biological sciences. Psychology General agronomy. Plant production Genetic aspects Genotype Genotype & phenotype Genotypes Life Sciences Microbial activity Microbiology Phospholipids Physics, chemistry, biochemistry and biology of agricultural and forest soils Plant Physiology Plant Sciences Regular Article Rhizosphere Soil bacteria Soil biochemistry Soil ecology Soil fungi Soil microorganisms Soil productivity Soil science Soil Science & Conservation Soil-plant relationships. Soil fertility Soil-plant relationships. Soil fertility. Fertilization. Amendments Soils Statistical analysis |
| title | Characterization of the rhizosphere microbial community from different Arabidopsis thaliana genotypes using phospholipid fatty acids (PLFA) analysis |
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