Assessment of sparse-based inpainting for retinal vessel removal
Some important eye diseases, like macular degeneration or diabetic retinopathy, can induce changes visible on the retina, for example as lesions. Segmentation of lesions or extraction of textural features from the fundus images are possible steps towards automatic detection of such diseases which co...
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Veröffentlicht in: | Signal processing. Image communication 2017-11, Vol.59, p.73-82 |
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description | Some important eye diseases, like macular degeneration or diabetic retinopathy, can induce changes visible on the retina, for example as lesions. Segmentation of lesions or extraction of textural features from the fundus images are possible steps towards automatic detection of such diseases which could facilitate screening as well as provide support for clinicians. For the task of detecting significant features, retinal blood vessels are considered as being interference on the retinal images. If these blood vessel structures could be suppressed, it might lead to a more accurate segmentation of retinal lesions as well as a better extraction of textural features to be used for pathology detection. This work proposes the use of sparse representations and dictionary learning techniques for retinal vessel inpainting. The performance of the algorithm is tested for greyscale and RGB images from the DRIVE and STARE public databases, employing different neighbourhoods and sparseness factors. Moreover, a comparison with the most common inpainting family, diffusion-based methods, is carried out. For this purpose, two different ways of assessing the quality of the inpainting are presented and used to evaluate the results of the non-artificial inpainting, i.e. where a reference image does not exist. The results suggest that the use of sparse-based inpainting performs very well for retinal blood vessels removal which will be useful for the future detection and classification of eye diseases.
•The performance of sparse-based inpainting for retinal vessel removal was explored.•A way to assess inpainting methods in non-artificial applications is established.•Different configurations of the sparse-based inpainting were tested and evaluated.•RGB-separated inpainting and RGB-jointly inpainting were compared.•An objective comparison of inpainting methods was carried out. |
doi_str_mv | 10.1016/j.image.2017.03.018 |
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•The performance of sparse-based inpainting for retinal vessel removal was explored.•A way to assess inpainting methods in non-artificial applications is established.•Different configurations of the sparse-based inpainting were tested and evaluated.•RGB-separated inpainting and RGB-jointly inpainting were compared.•An objective comparison of inpainting methods was carried out.</description><identifier>ISSN: 0923-5965</identifier><identifier>EISSN: 1879-2677</identifier><identifier>DOI: 10.1016/j.image.2017.03.018</identifier><language>eng</language><publisher>Amsterdam: Elsevier B.V</publisher><subject>Blood vessel removal ; Blood vessels ; Color imagery ; Diabetic retinopathy ; Diffusion-based inpainting ; Eye diseases ; Feature extraction ; Image detection ; Image inpainting ; Image segmentation ; Inpainting quality evaluation index ; Lesions ; Machine learning ; Macular degeneration ; Medical screening ; Non-artificial inpainting ; Pathology ; Quality assessment ; Retina ; Retinal images ; Sparse-based inpainting</subject><ispartof>Signal processing. Image communication, 2017-11, Vol.59, p.73-82</ispartof><rights>2017 Elsevier B.V.</rights><rights>Copyright Elsevier BV Nov 2017</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c376t-bddd2b020dce3f948b3ee5f652976098d762f7fdfd1001b0bdb386a1715a99563</citedby><cites>FETCH-LOGICAL-c376t-bddd2b020dce3f948b3ee5f652976098d762f7fdfd1001b0bdb386a1715a99563</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktohtml>$$Uhttps://dx.doi.org/10.1016/j.image.2017.03.018$$EHTML$$P50$$Gelsevier$$H</linktohtml><link.rule.ids>314,780,784,3550,27924,27925,45995</link.rule.ids></links><search><creatorcontrib>Colomer, A.</creatorcontrib><creatorcontrib>Naranjo, V.</creatorcontrib><creatorcontrib>Engan, K.</creatorcontrib><creatorcontrib>Skretting, K.</creatorcontrib><title>Assessment of sparse-based inpainting for retinal vessel removal</title><title>Signal processing. Image communication</title><description>Some important eye diseases, like macular degeneration or diabetic retinopathy, can induce changes visible on the retina, for example as lesions. Segmentation of lesions or extraction of textural features from the fundus images are possible steps towards automatic detection of such diseases which could facilitate screening as well as provide support for clinicians. For the task of detecting significant features, retinal blood vessels are considered as being interference on the retinal images. If these blood vessel structures could be suppressed, it might lead to a more accurate segmentation of retinal lesions as well as a better extraction of textural features to be used for pathology detection. This work proposes the use of sparse representations and dictionary learning techniques for retinal vessel inpainting. The performance of the algorithm is tested for greyscale and RGB images from the DRIVE and STARE public databases, employing different neighbourhoods and sparseness factors. Moreover, a comparison with the most common inpainting family, diffusion-based methods, is carried out. For this purpose, two different ways of assessing the quality of the inpainting are presented and used to evaluate the results of the non-artificial inpainting, i.e. where a reference image does not exist. The results suggest that the use of sparse-based inpainting performs very well for retinal blood vessels removal which will be useful for the future detection and classification of eye diseases.
•The performance of sparse-based inpainting for retinal vessel removal was explored.•A way to assess inpainting methods in non-artificial applications is established.•Different configurations of the sparse-based inpainting were tested and evaluated.•RGB-separated inpainting and RGB-jointly inpainting were compared.•An objective comparison of inpainting methods was carried out.</description><subject>Blood vessel removal</subject><subject>Blood vessels</subject><subject>Color imagery</subject><subject>Diabetic retinopathy</subject><subject>Diffusion-based inpainting</subject><subject>Eye diseases</subject><subject>Feature extraction</subject><subject>Image detection</subject><subject>Image inpainting</subject><subject>Image segmentation</subject><subject>Inpainting quality evaluation index</subject><subject>Lesions</subject><subject>Machine learning</subject><subject>Macular degeneration</subject><subject>Medical screening</subject><subject>Non-artificial inpainting</subject><subject>Pathology</subject><subject>Quality assessment</subject><subject>Retina</subject><subject>Retinal images</subject><subject>Sparse-based inpainting</subject><issn>0923-5965</issn><issn>1879-2677</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2017</creationdate><recordtype>article</recordtype><recordid>eNp9kE1LAzEQhoMoWKu_wMuC510nSZNsDoKl-AUFL3oO2c2kZNnu1mRb8N-bWs-eZgbeZ5h5CLmlUFGg8r6rwtZusGJAVQW8AlqfkRmtlS6ZVOqczEAzXgotxSW5SqkDALYAPSOPy5QwpS0OUzH6Iu1sTFg2NqErwrCzYZjCsCn8GIuIubV9cch57PO4HQ-2vyYX3vYJb_7qnHw-P32sXsv1-8vbarkuW67kVDbOOdYAA9ci93pRNxxReCmYVhJ07ZRkXnnnHQWgDTSu4bW0VFFhtRaSz8ndae8ujl97TJPpxn3M9yRDtdKUCyYWOcVPqTaOKUX0ZhezmvhtKJijKtOZX1XmqMoAN1lVph5OFOYHDgGjSW3AoUUXIraTcWP4l_8Bk91y_Q</recordid><startdate>201711</startdate><enddate>201711</enddate><creator>Colomer, A.</creator><creator>Naranjo, V.</creator><creator>Engan, K.</creator><creator>Skretting, K.</creator><general>Elsevier B.V</general><general>Elsevier BV</general><scope>AAYXX</scope><scope>CITATION</scope><scope>7SC</scope><scope>7SP</scope><scope>8FD</scope><scope>JQ2</scope><scope>L7M</scope><scope>L~C</scope><scope>L~D</scope></search><sort><creationdate>201711</creationdate><title>Assessment of sparse-based inpainting for retinal vessel removal</title><author>Colomer, A. ; Naranjo, V. ; Engan, K. ; Skretting, K.</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c376t-bddd2b020dce3f948b3ee5f652976098d762f7fdfd1001b0bdb386a1715a99563</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2017</creationdate><topic>Blood vessel removal</topic><topic>Blood vessels</topic><topic>Color imagery</topic><topic>Diabetic retinopathy</topic><topic>Diffusion-based inpainting</topic><topic>Eye diseases</topic><topic>Feature extraction</topic><topic>Image detection</topic><topic>Image inpainting</topic><topic>Image segmentation</topic><topic>Inpainting quality evaluation index</topic><topic>Lesions</topic><topic>Machine learning</topic><topic>Macular degeneration</topic><topic>Medical screening</topic><topic>Non-artificial inpainting</topic><topic>Pathology</topic><topic>Quality assessment</topic><topic>Retina</topic><topic>Retinal images</topic><topic>Sparse-based inpainting</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Colomer, A.</creatorcontrib><creatorcontrib>Naranjo, V.</creatorcontrib><creatorcontrib>Engan, K.</creatorcontrib><creatorcontrib>Skretting, K.</creatorcontrib><collection>CrossRef</collection><collection>Computer and Information Systems Abstracts</collection><collection>Electronics & Communications Abstracts</collection><collection>Technology Research Database</collection><collection>ProQuest Computer Science Collection</collection><collection>Advanced Technologies Database with Aerospace</collection><collection>Computer and Information Systems Abstracts Academic</collection><collection>Computer and Information Systems Abstracts Professional</collection><jtitle>Signal processing. Image communication</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Colomer, A.</au><au>Naranjo, V.</au><au>Engan, K.</au><au>Skretting, K.</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Assessment of sparse-based inpainting for retinal vessel removal</atitle><jtitle>Signal processing. Image communication</jtitle><date>2017-11</date><risdate>2017</risdate><volume>59</volume><spage>73</spage><epage>82</epage><pages>73-82</pages><issn>0923-5965</issn><eissn>1879-2677</eissn><abstract>Some important eye diseases, like macular degeneration or diabetic retinopathy, can induce changes visible on the retina, for example as lesions. Segmentation of lesions or extraction of textural features from the fundus images are possible steps towards automatic detection of such diseases which could facilitate screening as well as provide support for clinicians. For the task of detecting significant features, retinal blood vessels are considered as being interference on the retinal images. If these blood vessel structures could be suppressed, it might lead to a more accurate segmentation of retinal lesions as well as a better extraction of textural features to be used for pathology detection. This work proposes the use of sparse representations and dictionary learning techniques for retinal vessel inpainting. The performance of the algorithm is tested for greyscale and RGB images from the DRIVE and STARE public databases, employing different neighbourhoods and sparseness factors. Moreover, a comparison with the most common inpainting family, diffusion-based methods, is carried out. For this purpose, two different ways of assessing the quality of the inpainting are presented and used to evaluate the results of the non-artificial inpainting, i.e. where a reference image does not exist. The results suggest that the use of sparse-based inpainting performs very well for retinal blood vessels removal which will be useful for the future detection and classification of eye diseases.
•The performance of sparse-based inpainting for retinal vessel removal was explored.•A way to assess inpainting methods in non-artificial applications is established.•Different configurations of the sparse-based inpainting were tested and evaluated.•RGB-separated inpainting and RGB-jointly inpainting were compared.•An objective comparison of inpainting methods was carried out.</abstract><cop>Amsterdam</cop><pub>Elsevier B.V</pub><doi>10.1016/j.image.2017.03.018</doi><tpages>10</tpages><oa>free_for_read</oa></addata></record> |
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subjects | Blood vessel removal Blood vessels Color imagery Diabetic retinopathy Diffusion-based inpainting Eye diseases Feature extraction Image detection Image inpainting Image segmentation Inpainting quality evaluation index Lesions Machine learning Macular degeneration Medical screening Non-artificial inpainting Pathology Quality assessment Retina Retinal images Sparse-based inpainting |
title | Assessment of sparse-based inpainting for retinal vessel removal |
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