Genetic diversity within populations of an arctic–alpine species declines with decreasing latitude across the Northern Hemisphere
Aim: We identified and evaluated general latitudinal trends in genetic diversity within populations of a widespread arctic–alpine plant, Dryas octopetala, to examine the applicability to this species of the dominant hypothesis that intraspecific genetic diversity is highest in the tropics and declin...
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description | Aim: We identified and evaluated general latitudinal trends in genetic diversity within populations of a widespread arctic–alpine plant, Dryas octopetala, to examine the applicability to this species of the dominant hypothesis that intraspecific genetic diversity is highest in the tropics and declines towards the poles. Location: The circumpolar Arctic and northern temperate alpine ranges, with a focus on high altitude mountains at the species lowest latitudinal margin in the Japanese archipelago. Methods: Within-population genetic diversity was assessed using genotypes determined at nine microsatellite loci (n = 489), chloroplast DNA sequences (atpB-rbcL and trnV-ndhC spacers, n = 181) and a nuclear gene sequence (LEAFY, n = 173) of 18 populations, as well as a previously published amplified fragment length polymorphism data-set for 26 populations, across the distributional range of the species. The latitudinal pattern of intra-population genetic diversity was modelled at hemispheric scale to discriminate linear latitudinal and quadratic central-marginal trends in genetic diversity. Population genetic structure was assessed by Bayesian clustering analyses. Results: At hemispheric scale, we identified two interacting effects: a general latitudinal decline in genetic diversity towards the equator and a central–marginal effect, whereby genetic diversity decreases towards the margins of a species' range. This decrease was more marked in low-latitude marginal populations than in high-latitude marginal populations. Populations at the lowest latitudes in the Japanese archipelago showed the lowest level of genetic diversity but exhibited distinctive genetic variation. Main conclusion: The latitudinal decline in genetic diversity within populations of this arctic–alpine plant across its range was opposite to the commonly observed trend. A significant part of the equator-ward latitudinal decline in genetic diversity in this arctic–alpine species may be attributable to a "sky island" effect, which played a greater role at low latitudes. |
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Location: The circumpolar Arctic and northern temperate alpine ranges, with a focus on high altitude mountains at the species lowest latitudinal margin in the Japanese archipelago. Methods: Within-population genetic diversity was assessed using genotypes determined at nine microsatellite loci (n = 489), chloroplast DNA sequences (atpB-rbcL and trnV-ndhC spacers, n = 181) and a nuclear gene sequence (LEAFY, n = 173) of 18 populations, as well as a previously published amplified fragment length polymorphism data-set for 26 populations, across the distributional range of the species. The latitudinal pattern of intra-population genetic diversity was modelled at hemispheric scale to discriminate linear latitudinal and quadratic central-marginal trends in genetic diversity. Population genetic structure was assessed by Bayesian clustering analyses. Results: At hemispheric scale, we identified two interacting effects: a general latitudinal decline in genetic diversity towards the equator and a central–marginal effect, whereby genetic diversity decreases towards the margins of a species' range. This decrease was more marked in low-latitude marginal populations than in high-latitude marginal populations. Populations at the lowest latitudes in the Japanese archipelago showed the lowest level of genetic diversity but exhibited distinctive genetic variation. Main conclusion: The latitudinal decline in genetic diversity within populations of this arctic–alpine plant across its range was opposite to the commonly observed trend. A significant part of the equator-ward latitudinal decline in genetic diversity in this arctic–alpine species may be attributable to a "sky island" effect, which played a greater role at low latitudes.</description><identifier>ISSN: 0305-0270</identifier><identifier>EISSN: 1365-2699</identifier><identifier>DOI: 10.1111/jbi.13085</identifier><language>eng</language><publisher>Oxford: John Wiley & Sons Ltd</publisher><subject>Alpine environments ; Amplified fragment length polymorphism ; arctic–alpine species ; Bayesian analysis ; Biodiversity ; Chloroplast DNA ; Clustering ; Deoxyribonucleic acid ; DNA ; Dryas octopetala L ; Equator ; Gene loci ; Gene polymorphism ; Gene sequencing ; Genetic diversity ; Genetic structure ; Genotypes ; High altitude ; high‐latitude marginal population ; Latitude ; latitudinal gradient ; low‐latitude marginal population ; Mountains ; Northern Hemisphere ; Nucleotide sequence ; Polar environments ; Polymorphism ; Population decline ; Population genetics ; Populations ; Refugia and phylogeography ; Species ; Species diversity ; Trends ; Tropical environments</subject><ispartof>Journal of biogeography, 2017-12, Vol.44 (12), p.2740-2751</ispartof><rights>Copyright © 2017 John Wiley & Sons Ltd.</rights><rights>2017 John Wiley & Sons Ltd</rights><rights>Copyright © 2017 John Wiley & Sons Ltd</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c3195-b80e67305007ec566f8df8de4852811b6be16187babea84e96ec030f0e3c3aaf3</citedby><cites>FETCH-LOGICAL-c3195-b80e67305007ec566f8df8de4852811b6be16187babea84e96ec030f0e3c3aaf3</cites><orcidid>0000-0001-7992-5775 ; 0000-0003-3010-8699 ; 0000-0001-8843-8274 ; 0000-0001-6707-7369 ; 0000-0001-5853-0475</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.jstor.org/stable/pdf/26626743$$EPDF$$P50$$Gjstor$$H</linktopdf><linktohtml>$$Uhttps://www.jstor.org/stable/26626743$$EHTML$$P50$$Gjstor$$H</linktohtml><link.rule.ids>315,781,785,804,1418,27929,27930,45579,45580,58022,58255</link.rule.ids></links><search><creatorcontrib>Hirao, Akira S.</creatorcontrib><creatorcontrib>Watanabe, Mikio</creatorcontrib><creatorcontrib>Tsuyuzaki, Shiro</creatorcontrib><creatorcontrib>Shimono, Ayako</creatorcontrib><creatorcontrib>Li, Xuefeng</creatorcontrib><creatorcontrib>Masuzawa, Takehiro</creatorcontrib><creatorcontrib>Wada, Naoya</creatorcontrib><title>Genetic diversity within populations of an arctic–alpine species declines with decreasing latitude across the Northern Hemisphere</title><title>Journal of biogeography</title><description>Aim: We identified and evaluated general latitudinal trends in genetic diversity within populations of a widespread arctic–alpine plant, Dryas octopetala, to examine the applicability to this species of the dominant hypothesis that intraspecific genetic diversity is highest in the tropics and declines towards the poles. Location: The circumpolar Arctic and northern temperate alpine ranges, with a focus on high altitude mountains at the species lowest latitudinal margin in the Japanese archipelago. Methods: Within-population genetic diversity was assessed using genotypes determined at nine microsatellite loci (n = 489), chloroplast DNA sequences (atpB-rbcL and trnV-ndhC spacers, n = 181) and a nuclear gene sequence (LEAFY, n = 173) of 18 populations, as well as a previously published amplified fragment length polymorphism data-set for 26 populations, across the distributional range of the species. The latitudinal pattern of intra-population genetic diversity was modelled at hemispheric scale to discriminate linear latitudinal and quadratic central-marginal trends in genetic diversity. Population genetic structure was assessed by Bayesian clustering analyses. Results: At hemispheric scale, we identified two interacting effects: a general latitudinal decline in genetic diversity towards the equator and a central–marginal effect, whereby genetic diversity decreases towards the margins of a species' range. This decrease was more marked in low-latitude marginal populations than in high-latitude marginal populations. Populations at the lowest latitudes in the Japanese archipelago showed the lowest level of genetic diversity but exhibited distinctive genetic variation. Main conclusion: The latitudinal decline in genetic diversity within populations of this arctic–alpine plant across its range was opposite to the commonly observed trend. A significant part of the equator-ward latitudinal decline in genetic diversity in this arctic–alpine species may be attributable to a "sky island" effect, which played a greater role at low latitudes.</description><subject>Alpine environments</subject><subject>Amplified fragment length polymorphism</subject><subject>arctic–alpine species</subject><subject>Bayesian analysis</subject><subject>Biodiversity</subject><subject>Chloroplast DNA</subject><subject>Clustering</subject><subject>Deoxyribonucleic acid</subject><subject>DNA</subject><subject>Dryas octopetala L</subject><subject>Equator</subject><subject>Gene loci</subject><subject>Gene polymorphism</subject><subject>Gene sequencing</subject><subject>Genetic diversity</subject><subject>Genetic structure</subject><subject>Genotypes</subject><subject>High altitude</subject><subject>high‐latitude marginal population</subject><subject>Latitude</subject><subject>latitudinal gradient</subject><subject>low‐latitude marginal population</subject><subject>Mountains</subject><subject>Northern Hemisphere</subject><subject>Nucleotide sequence</subject><subject>Polar environments</subject><subject>Polymorphism</subject><subject>Population decline</subject><subject>Population genetics</subject><subject>Populations</subject><subject>Refugia and phylogeography</subject><subject>Species</subject><subject>Species diversity</subject><subject>Trends</subject><subject>Tropical environments</subject><issn>0305-0270</issn><issn>1365-2699</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2017</creationdate><recordtype>article</recordtype><recordid>eNp1kEFLwzAUx4MoOKcHP4AQ8OShW9K0aXrUodtk6EXPJU1fXUqX1qRz7Cb4EfyGfhKzVb0ZAi8Pfr8k74_QOSUj6te4yvWIMiLiAzSgjMdByNP0EA0II3FAwoQcoxPnKkJIGrNogD6mYKDTChf6DazT3RZvdLfUBrdNu65lpxvjcFNiabC0ypNf75-ybrUB7FpQGhwuQNW-d3tz11mQTpsXvNO7dQFYKts4h7sl4IfG-mINnsFKu9Yf4RQdlbJ2cPZTh-j57vZpMgsWj9P55HoRKEbTOMgFAZ74OQhJQMWcl6LwGyIRh4LSnOdAORVJLnOQIoKUg_JjlwSYYlKWbIgu-3tb27yuwXVZ1ayt8U9mNOVJSGmSCE9d9dT-zxbKrLV6Je02oyTbZZz5jLN9xp4d9-xG17D9H8zub-a_xkVvVK5r7J8Rch7yJGLsG0tMiyU</recordid><startdate>20171201</startdate><enddate>20171201</enddate><creator>Hirao, Akira S.</creator><creator>Watanabe, Mikio</creator><creator>Tsuyuzaki, Shiro</creator><creator>Shimono, Ayako</creator><creator>Li, Xuefeng</creator><creator>Masuzawa, Takehiro</creator><creator>Wada, Naoya</creator><general>John Wiley & Sons Ltd</general><general>Wiley Subscription Services, Inc</general><scope>AAYXX</scope><scope>CITATION</scope><scope>7SN</scope><scope>7SS</scope><scope>8FD</scope><scope>C1K</scope><scope>FR3</scope><scope>P64</scope><scope>RC3</scope><orcidid>https://orcid.org/0000-0001-7992-5775</orcidid><orcidid>https://orcid.org/0000-0003-3010-8699</orcidid><orcidid>https://orcid.org/0000-0001-8843-8274</orcidid><orcidid>https://orcid.org/0000-0001-6707-7369</orcidid><orcidid>https://orcid.org/0000-0001-5853-0475</orcidid></search><sort><creationdate>20171201</creationdate><title>Genetic diversity within populations of an arctic–alpine species declines with decreasing latitude across the Northern Hemisphere</title><author>Hirao, Akira S. ; Watanabe, Mikio ; Tsuyuzaki, Shiro ; Shimono, Ayako ; Li, Xuefeng ; Masuzawa, Takehiro ; Wada, Naoya</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c3195-b80e67305007ec566f8df8de4852811b6be16187babea84e96ec030f0e3c3aaf3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2017</creationdate><topic>Alpine environments</topic><topic>Amplified fragment length polymorphism</topic><topic>arctic–alpine species</topic><topic>Bayesian analysis</topic><topic>Biodiversity</topic><topic>Chloroplast DNA</topic><topic>Clustering</topic><topic>Deoxyribonucleic acid</topic><topic>DNA</topic><topic>Dryas octopetala L</topic><topic>Equator</topic><topic>Gene loci</topic><topic>Gene polymorphism</topic><topic>Gene sequencing</topic><topic>Genetic diversity</topic><topic>Genetic structure</topic><topic>Genotypes</topic><topic>High altitude</topic><topic>high‐latitude marginal population</topic><topic>Latitude</topic><topic>latitudinal gradient</topic><topic>low‐latitude marginal population</topic><topic>Mountains</topic><topic>Northern Hemisphere</topic><topic>Nucleotide sequence</topic><topic>Polar environments</topic><topic>Polymorphism</topic><topic>Population decline</topic><topic>Population genetics</topic><topic>Populations</topic><topic>Refugia and phylogeography</topic><topic>Species</topic><topic>Species diversity</topic><topic>Trends</topic><topic>Tropical environments</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Hirao, Akira S.</creatorcontrib><creatorcontrib>Watanabe, Mikio</creatorcontrib><creatorcontrib>Tsuyuzaki, Shiro</creatorcontrib><creatorcontrib>Shimono, Ayako</creatorcontrib><creatorcontrib>Li, Xuefeng</creatorcontrib><creatorcontrib>Masuzawa, Takehiro</creatorcontrib><creatorcontrib>Wada, Naoya</creatorcontrib><collection>CrossRef</collection><collection>Ecology Abstracts</collection><collection>Entomology Abstracts (Full archive)</collection><collection>Technology Research Database</collection><collection>Environmental Sciences and Pollution Management</collection><collection>Engineering Research Database</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Genetics Abstracts</collection><jtitle>Journal of biogeography</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Hirao, Akira S.</au><au>Watanabe, Mikio</au><au>Tsuyuzaki, Shiro</au><au>Shimono, Ayako</au><au>Li, Xuefeng</au><au>Masuzawa, Takehiro</au><au>Wada, Naoya</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Genetic diversity within populations of an arctic–alpine species declines with decreasing latitude across the Northern Hemisphere</atitle><jtitle>Journal of biogeography</jtitle><date>2017-12-01</date><risdate>2017</risdate><volume>44</volume><issue>12</issue><spage>2740</spage><epage>2751</epage><pages>2740-2751</pages><issn>0305-0270</issn><eissn>1365-2699</eissn><abstract>Aim: We identified and evaluated general latitudinal trends in genetic diversity within populations of a widespread arctic–alpine plant, Dryas octopetala, to examine the applicability to this species of the dominant hypothesis that intraspecific genetic diversity is highest in the tropics and declines towards the poles. Location: The circumpolar Arctic and northern temperate alpine ranges, with a focus on high altitude mountains at the species lowest latitudinal margin in the Japanese archipelago. Methods: Within-population genetic diversity was assessed using genotypes determined at nine microsatellite loci (n = 489), chloroplast DNA sequences (atpB-rbcL and trnV-ndhC spacers, n = 181) and a nuclear gene sequence (LEAFY, n = 173) of 18 populations, as well as a previously published amplified fragment length polymorphism data-set for 26 populations, across the distributional range of the species. The latitudinal pattern of intra-population genetic diversity was modelled at hemispheric scale to discriminate linear latitudinal and quadratic central-marginal trends in genetic diversity. Population genetic structure was assessed by Bayesian clustering analyses. Results: At hemispheric scale, we identified two interacting effects: a general latitudinal decline in genetic diversity towards the equator and a central–marginal effect, whereby genetic diversity decreases towards the margins of a species' range. This decrease was more marked in low-latitude marginal populations than in high-latitude marginal populations. Populations at the lowest latitudes in the Japanese archipelago showed the lowest level of genetic diversity but exhibited distinctive genetic variation. Main conclusion: The latitudinal decline in genetic diversity within populations of this arctic–alpine plant across its range was opposite to the commonly observed trend. A significant part of the equator-ward latitudinal decline in genetic diversity in this arctic–alpine species may be attributable to a "sky island" effect, which played a greater role at low latitudes.</abstract><cop>Oxford</cop><pub>John Wiley & Sons Ltd</pub><doi>10.1111/jbi.13085</doi><tpages>12</tpages><orcidid>https://orcid.org/0000-0001-7992-5775</orcidid><orcidid>https://orcid.org/0000-0003-3010-8699</orcidid><orcidid>https://orcid.org/0000-0001-8843-8274</orcidid><orcidid>https://orcid.org/0000-0001-6707-7369</orcidid><orcidid>https://orcid.org/0000-0001-5853-0475</orcidid></addata></record> |
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subjects | Alpine environments Amplified fragment length polymorphism arctic–alpine species Bayesian analysis Biodiversity Chloroplast DNA Clustering Deoxyribonucleic acid DNA Dryas octopetala L Equator Gene loci Gene polymorphism Gene sequencing Genetic diversity Genetic structure Genotypes High altitude high‐latitude marginal population Latitude latitudinal gradient low‐latitude marginal population Mountains Northern Hemisphere Nucleotide sequence Polar environments Polymorphism Population decline Population genetics Populations Refugia and phylogeography Species Species diversity Trends Tropical environments |
title | Genetic diversity within populations of an arctic–alpine species declines with decreasing latitude across the Northern Hemisphere |
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