Improved genetic parameter estimations in zoysiagrass by implementing post hoc blocking
Randomized complete block (RCB) design is the most widely used experimental design in biological sciences. As number of treatments increases, the block size become larger and it looses the capacity to control the variance within block, which is its original purpose. A method known as post hoc blocki...
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description | Randomized complete block (RCB) design is the most widely used experimental design in biological sciences. As number of treatments increases, the block size become larger and it looses the capacity to control the variance within block, which is its original purpose. A method known as post hoc blocking could be used in these cases to improve the genetic parameter estimation and thus obtain an unbiased assessment of the performance of a given treatment. In trufgrass breeding, as other breeding program, this is a common challenge. The goal of this study was to test the capacity of different post hoc blocking designs to improve the genetic parameter estimation of zoysiagrass (
Zoysia
spp.). We evaluated two post hoc blocking designs; row–column (R–C) and incomplete block (IB) designs on five genotype trials located in Florida. The results showed that post hoc R–C design had superior model fitting than both the original RCB and the post hoc IB designs when studied at the single measurement level and at the site level. The narrow-sense heritability (0.24–0.40) and the genotype-by-measurement correlation (0.57–0.99) did not change significantly when R–C was compared to the original RCB design. The ranking of the top performing genotypes changed considerably when comparing RCB to R–C design, but the degree depended on the location analyzed. We conclude that the change in the ranking of the top (potentially select individuals) is coming from the better control of intra-block environmental variation, and this could potentially have a significant impact on the breeding selection process. |
doi_str_mv | 10.1007/s10681-017-1984-3 |
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Zoysia
spp.). We evaluated two post hoc blocking designs; row–column (R–C) and incomplete block (IB) designs on five genotype trials located in Florida. The results showed that post hoc R–C design had superior model fitting than both the original RCB and the post hoc IB designs when studied at the single measurement level and at the site level. The narrow-sense heritability (0.24–0.40) and the genotype-by-measurement correlation (0.57–0.99) did not change significantly when R–C was compared to the original RCB design. The ranking of the top performing genotypes changed considerably when comparing RCB to R–C design, but the degree depended on the location analyzed. We conclude that the change in the ranking of the top (potentially select individuals) is coming from the better control of intra-block environmental variation, and this could potentially have a significant impact on the breeding selection process.</description><identifier>ISSN: 0014-2336</identifier><identifier>EISSN: 1573-5060</identifier><identifier>DOI: 10.1007/s10681-017-1984-3</identifier><language>eng</language><publisher>Dordrecht: Springer Netherlands</publisher><subject>Biomedical and Life Sciences ; Biotechnology ; Blocking ; Breeding ; Columns (process) ; Correlation analysis ; Estimating techniques ; Experimental design ; Genetics ; Genotypes ; Grasses ; Heritability ; Hogs ; Life Sciences ; Parameter estimation ; Plant Genetics and Genomics ; Plant Pathology ; Plant Physiology ; Plant Sciences ; Ranking</subject><ispartof>Euphytica, 2017-08, Vol.213 (8), p.1, Article 195</ispartof><rights>Springer Science+Business Media B.V. 2017</rights><rights>COPYRIGHT 2017 Springer</rights><rights>Euphytica is a copyright of Springer, 2017.</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c355t-2f71dc8bb34e8d878711defe6747b20a1b1f22fb897caa6dfd40237ed02f16813</citedby><cites>FETCH-LOGICAL-c355t-2f71dc8bb34e8d878711defe6747b20a1b1f22fb897caa6dfd40237ed02f16813</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://link.springer.com/content/pdf/10.1007/s10681-017-1984-3$$EPDF$$P50$$Gspringer$$H</linktopdf><linktohtml>$$Uhttps://link.springer.com/10.1007/s10681-017-1984-3$$EHTML$$P50$$Gspringer$$H</linktohtml><link.rule.ids>314,780,784,27924,27925,41488,42557,51319</link.rule.ids></links><search><creatorcontrib>Xing, Lin</creatorcontrib><creatorcontrib>Gezan, Salvador</creatorcontrib><creatorcontrib>Kenworthy, Kevin</creatorcontrib><creatorcontrib>Unruh, J. Bryan</creatorcontrib><creatorcontrib>Munoz, Patricio</creatorcontrib><title>Improved genetic parameter estimations in zoysiagrass by implementing post hoc blocking</title><title>Euphytica</title><addtitle>Euphytica</addtitle><description>Randomized complete block (RCB) design is the most widely used experimental design in biological sciences. As number of treatments increases, the block size become larger and it looses the capacity to control the variance within block, which is its original purpose. A method known as post hoc blocking could be used in these cases to improve the genetic parameter estimation and thus obtain an unbiased assessment of the performance of a given treatment. In trufgrass breeding, as other breeding program, this is a common challenge. The goal of this study was to test the capacity of different post hoc blocking designs to improve the genetic parameter estimation of zoysiagrass (
Zoysia
spp.). We evaluated two post hoc blocking designs; row–column (R–C) and incomplete block (IB) designs on five genotype trials located in Florida. The results showed that post hoc R–C design had superior model fitting than both the original RCB and the post hoc IB designs when studied at the single measurement level and at the site level. The narrow-sense heritability (0.24–0.40) and the genotype-by-measurement correlation (0.57–0.99) did not change significantly when R–C was compared to the original RCB design. The ranking of the top performing genotypes changed considerably when comparing RCB to R–C design, but the degree depended on the location analyzed. We conclude that the change in the ranking of the top (potentially select individuals) is coming from the better control of intra-block environmental variation, and this could potentially have a significant impact on the breeding selection process.</description><subject>Biomedical and Life Sciences</subject><subject>Biotechnology</subject><subject>Blocking</subject><subject>Breeding</subject><subject>Columns (process)</subject><subject>Correlation analysis</subject><subject>Estimating techniques</subject><subject>Experimental design</subject><subject>Genetics</subject><subject>Genotypes</subject><subject>Grasses</subject><subject>Heritability</subject><subject>Hogs</subject><subject>Life Sciences</subject><subject>Parameter estimation</subject><subject>Plant Genetics and Genomics</subject><subject>Plant Pathology</subject><subject>Plant Physiology</subject><subject>Plant Sciences</subject><subject>Ranking</subject><issn>0014-2336</issn><issn>1573-5060</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2017</creationdate><recordtype>article</recordtype><sourceid>ABUWG</sourceid><sourceid>AFKRA</sourceid><sourceid>AZQEC</sourceid><sourceid>BENPR</sourceid><sourceid>CCPQU</sourceid><sourceid>DWQXO</sourceid><sourceid>GNUQQ</sourceid><recordid>eNp1kE9r3DAQxUVpINttPkBugp6dzEi25T2G0PyBQC8tPQpZHjnariVXcgqbTx8tziGXMoeB4b2ZeT_GLhGuEEBdZ4S2wwpQVbjr6kp-YhtslKwaaOEz2wBgXQkp23P2Jec9AOxUAxv2-3GaU_xHAx8p0OItn00yEy2UOOXFT2bxMWTuA3-Nx-zNmEzOvD9yP80HmigsPox8jnnhz9Hy_hDtnzL5ys6cOWS6eO9b9uvu-8_bh-rpx_3j7c1TZWXTLJVwCgfb9b2sqRs61SnEgRy1qla9AIM9OiFc3-2UNaYd3FCDkIoGEA5LYLll39a9JcXfl_Kx3seXFMpJjTtRwivZNkV1tapGcyDtg4tLMrbUQJO3MZDzZX6jsAZVt81pLa4Gm2LOiZyeU2GRjhpBn4DrFbguwPUJuJbFI1ZPLtowUvrwyn9Nb2zShCc</recordid><startdate>20170801</startdate><enddate>20170801</enddate><creator>Xing, Lin</creator><creator>Gezan, Salvador</creator><creator>Kenworthy, Kevin</creator><creator>Unruh, J. Bryan</creator><creator>Munoz, Patricio</creator><general>Springer Netherlands</general><general>Springer</general><general>Springer Nature B.V</general><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7SN</scope><scope>7SS</scope><scope>7T7</scope><scope>7TM</scope><scope>7X2</scope><scope>7XB</scope><scope>88I</scope><scope>8FD</scope><scope>8FE</scope><scope>8FH</scope><scope>8FK</scope><scope>ABUWG</scope><scope>AFKRA</scope><scope>ATCPS</scope><scope>AZQEC</scope><scope>BENPR</scope><scope>BHPHI</scope><scope>C1K</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FR3</scope><scope>GNUQQ</scope><scope>HCIFZ</scope><scope>M0K</scope><scope>M2P</scope><scope>M7N</scope><scope>P64</scope><scope>PATMY</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>PYCSY</scope><scope>Q9U</scope><scope>RC3</scope></search><sort><creationdate>20170801</creationdate><title>Improved genetic parameter estimations in zoysiagrass by implementing post hoc blocking</title><author>Xing, Lin ; Gezan, Salvador ; Kenworthy, Kevin ; Unruh, J. Bryan ; Munoz, Patricio</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c355t-2f71dc8bb34e8d878711defe6747b20a1b1f22fb897caa6dfd40237ed02f16813</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2017</creationdate><topic>Biomedical and Life Sciences</topic><topic>Biotechnology</topic><topic>Blocking</topic><topic>Breeding</topic><topic>Columns (process)</topic><topic>Correlation analysis</topic><topic>Estimating techniques</topic><topic>Experimental design</topic><topic>Genetics</topic><topic>Genotypes</topic><topic>Grasses</topic><topic>Heritability</topic><topic>Hogs</topic><topic>Life Sciences</topic><topic>Parameter estimation</topic><topic>Plant Genetics and Genomics</topic><topic>Plant Pathology</topic><topic>Plant Physiology</topic><topic>Plant Sciences</topic><topic>Ranking</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Xing, Lin</creatorcontrib><creatorcontrib>Gezan, Salvador</creatorcontrib><creatorcontrib>Kenworthy, Kevin</creatorcontrib><creatorcontrib>Unruh, J. 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Bryan</au><au>Munoz, Patricio</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Improved genetic parameter estimations in zoysiagrass by implementing post hoc blocking</atitle><jtitle>Euphytica</jtitle><stitle>Euphytica</stitle><date>2017-08-01</date><risdate>2017</risdate><volume>213</volume><issue>8</issue><spage>1</spage><pages>1-</pages><artnum>195</artnum><issn>0014-2336</issn><eissn>1573-5060</eissn><abstract>Randomized complete block (RCB) design is the most widely used experimental design in biological sciences. As number of treatments increases, the block size become larger and it looses the capacity to control the variance within block, which is its original purpose. A method known as post hoc blocking could be used in these cases to improve the genetic parameter estimation and thus obtain an unbiased assessment of the performance of a given treatment. In trufgrass breeding, as other breeding program, this is a common challenge. The goal of this study was to test the capacity of different post hoc blocking designs to improve the genetic parameter estimation of zoysiagrass (
Zoysia
spp.). We evaluated two post hoc blocking designs; row–column (R–C) and incomplete block (IB) designs on five genotype trials located in Florida. The results showed that post hoc R–C design had superior model fitting than both the original RCB and the post hoc IB designs when studied at the single measurement level and at the site level. The narrow-sense heritability (0.24–0.40) and the genotype-by-measurement correlation (0.57–0.99) did not change significantly when R–C was compared to the original RCB design. The ranking of the top performing genotypes changed considerably when comparing RCB to R–C design, but the degree depended on the location analyzed. We conclude that the change in the ranking of the top (potentially select individuals) is coming from the better control of intra-block environmental variation, and this could potentially have a significant impact on the breeding selection process.</abstract><cop>Dordrecht</cop><pub>Springer Netherlands</pub><doi>10.1007/s10681-017-1984-3</doi></addata></record> |
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subjects | Biomedical and Life Sciences Biotechnology Blocking Breeding Columns (process) Correlation analysis Estimating techniques Experimental design Genetics Genotypes Grasses Heritability Hogs Life Sciences Parameter estimation Plant Genetics and Genomics Plant Pathology Plant Physiology Plant Sciences Ranking |
title | Improved genetic parameter estimations in zoysiagrass by implementing post hoc blocking |
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