Linkage map construction and QTL identification of P-deficiency tolerance in Oryza rufipogon Griff. at early seedling stage
Low phosphorus availability is a major factor limiting rice productivity. In this study, a population of backcross recombinant inbred lines (BILs) derived from an inter-specific cross ( Oryza sativa L. × O. rufipogon Griff.) was used for genetic linkage map construction and quantitative trait locus...
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| Veröffentlicht in: | Euphytica 2017-04, Vol.213 (4), p.1, Article 96 |
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| creator | Luo, Xiang-Dong Liu, Jian Dai, Liang-Fang Zhang, Fan-Tao Wan, Yong Xie, Jian-Kun |
| description | Low phosphorus availability is a major factor limiting rice productivity. In this study, a population of backcross recombinant inbred lines (BILs) derived from an inter-specific cross (
Oryza sativa
L. ×
O. rufipogon
Griff.) was used for genetic linkage map construction and quantitative trait locus (QTL) mapping. The results showed that a linkage map consisting of 153 markers was constructed. Twenty-one out of 231 BILs were tolerant of low-phosphorus according to the index to P-deficiency tolerance. Twenty-three QTLs on chromosomes 1, 2, 3, 7, 8, 9 and 11 were detected, of which eight QTLs showed high (22.93–37.32%) contribution to phenotypic variation. In addition, most of QTLs in this study (18 out of 23 QTLs) were located and overlapped on the chromosome 1, 3 and 11, which individually explained 6.07–34.70% phenotypic variation, indicating that there might be multiple main effect QTLs related to P-deficiency tolerance in
O. rufipogon
, and these QTLs might cluster in the same region. These results would provide helpful information for cloning and utilizing the P-deficiency tolerance-responsive genes from
O. rufipogon
. |
| doi_str_mv | 10.1007/s10681-017-1884-6 |
| format | Article |
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Oryza sativa
L. ×
O. rufipogon
Griff.) was used for genetic linkage map construction and quantitative trait locus (QTL) mapping. The results showed that a linkage map consisting of 153 markers was constructed. Twenty-one out of 231 BILs were tolerant of low-phosphorus according to the index to P-deficiency tolerance. Twenty-three QTLs on chromosomes 1, 2, 3, 7, 8, 9 and 11 were detected, of which eight QTLs showed high (22.93–37.32%) contribution to phenotypic variation. In addition, most of QTLs in this study (18 out of 23 QTLs) were located and overlapped on the chromosome 1, 3 and 11, which individually explained 6.07–34.70% phenotypic variation, indicating that there might be multiple main effect QTLs related to P-deficiency tolerance in
O. rufipogon
, and these QTLs might cluster in the same region. These results would provide helpful information for cloning and utilizing the P-deficiency tolerance-responsive genes from
O. rufipogon
.</description><identifier>ISSN: 0014-2336</identifier><identifier>EISSN: 1573-5060</identifier><identifier>DOI: 10.1007/s10681-017-1884-6</identifier><language>eng</language><publisher>Dordrecht: Springer Netherlands</publisher><subject>Biomedical and Life Sciences ; Biotechnology ; Chromosomes ; Cloning ; Gene mapping ; Genes ; Genetic aspects ; Life Sciences ; Phenotypic variations ; Phosphorus ; Plant Genetics and Genomics ; Plant Pathology ; Plant Physiology ; Plant Sciences ; Quantitative genetics ; Rice ; Seedlings ; Studies</subject><ispartof>Euphytica, 2017-04, Vol.213 (4), p.1, Article 96</ispartof><rights>Springer Science+Business Media Dordrecht 2017</rights><rights>COPYRIGHT 2017 Springer</rights><rights>Euphytica is a copyright of Springer, 2017.</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c355t-a97b2bdf8e154e14acce6f096928331f6eb69be8041f2c0b8c0aa04a680024433</citedby><cites>FETCH-LOGICAL-c355t-a97b2bdf8e154e14acce6f096928331f6eb69be8041f2c0b8c0aa04a680024433</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://link.springer.com/content/pdf/10.1007/s10681-017-1884-6$$EPDF$$P50$$Gspringer$$H</linktopdf><linktohtml>$$Uhttps://link.springer.com/10.1007/s10681-017-1884-6$$EHTML$$P50$$Gspringer$$H</linktohtml><link.rule.ids>314,777,781,27905,27906,41469,42538,51300</link.rule.ids></links><search><creatorcontrib>Luo, Xiang-Dong</creatorcontrib><creatorcontrib>Liu, Jian</creatorcontrib><creatorcontrib>Dai, Liang-Fang</creatorcontrib><creatorcontrib>Zhang, Fan-Tao</creatorcontrib><creatorcontrib>Wan, Yong</creatorcontrib><creatorcontrib>Xie, Jian-Kun</creatorcontrib><title>Linkage map construction and QTL identification of P-deficiency tolerance in Oryza rufipogon Griff. at early seedling stage</title><title>Euphytica</title><addtitle>Euphytica</addtitle><description>Low phosphorus availability is a major factor limiting rice productivity. In this study, a population of backcross recombinant inbred lines (BILs) derived from an inter-specific cross (
Oryza sativa
L. ×
O. rufipogon
Griff.) was used for genetic linkage map construction and quantitative trait locus (QTL) mapping. The results showed that a linkage map consisting of 153 markers was constructed. Twenty-one out of 231 BILs were tolerant of low-phosphorus according to the index to P-deficiency tolerance. Twenty-three QTLs on chromosomes 1, 2, 3, 7, 8, 9 and 11 were detected, of which eight QTLs showed high (22.93–37.32%) contribution to phenotypic variation. In addition, most of QTLs in this study (18 out of 23 QTLs) were located and overlapped on the chromosome 1, 3 and 11, which individually explained 6.07–34.70% phenotypic variation, indicating that there might be multiple main effect QTLs related to P-deficiency tolerance in
O. rufipogon
, and these QTLs might cluster in the same region. These results would provide helpful information for cloning and utilizing the P-deficiency tolerance-responsive genes from
O. rufipogon
.</description><subject>Biomedical and Life Sciences</subject><subject>Biotechnology</subject><subject>Chromosomes</subject><subject>Cloning</subject><subject>Gene mapping</subject><subject>Genes</subject><subject>Genetic aspects</subject><subject>Life Sciences</subject><subject>Phenotypic variations</subject><subject>Phosphorus</subject><subject>Plant Genetics and Genomics</subject><subject>Plant Pathology</subject><subject>Plant Physiology</subject><subject>Plant Sciences</subject><subject>Quantitative genetics</subject><subject>Rice</subject><subject>Seedlings</subject><subject>Studies</subject><issn>0014-2336</issn><issn>1573-5060</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2017</creationdate><recordtype>article</recordtype><sourceid>ABUWG</sourceid><sourceid>AFKRA</sourceid><sourceid>AZQEC</sourceid><sourceid>BENPR</sourceid><sourceid>CCPQU</sourceid><sourceid>DWQXO</sourceid><sourceid>GNUQQ</sourceid><recordid>eNp1kUGPFCEQhYnRxHH1B3gj8cxYNDRNHzcbXU0mWU3WM6HposPaAyMwh9E_L2N78GI4ECrfq1fUI-Qthz0HGN4XDkpzBnxgXGvJ1DOy4_0gWA8KnpMdAJesE0K9JK9KeQKAcehhR34dQvxuF6RHe6IuxVLz2dWQIrVxpl8fDzTMGGvwwdk_5eTpFzZjeweM7kJrWjHb6JCGSB_y5ael-ezDKS0Nvs_B-z21laLN64UWxHkNcaGlNs_X5IW3a8E3f-8b8u3jh8e7T-zwcP_57vbAnOj7yuw4TN00e428l8ildQ6Vh1GNnRaCe4WTGifUILnvHEzagbUgrdIAnZRC3JB3W99TTj_OWKp5Succm6Vpu-IShO5ko_YbtdgVTYg-1WxdOzMeQ9tM-3Kr3w6NH-Qorm35JnA5lZLRm1MOR5svhoO5hmK2UEwL5WokjWqabtOUxsYF8z-j_Ff0G-Lbj6s</recordid><startdate>20170401</startdate><enddate>20170401</enddate><creator>Luo, Xiang-Dong</creator><creator>Liu, Jian</creator><creator>Dai, Liang-Fang</creator><creator>Zhang, Fan-Tao</creator><creator>Wan, Yong</creator><creator>Xie, Jian-Kun</creator><general>Springer Netherlands</general><general>Springer</general><general>Springer Nature B.V</general><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7SN</scope><scope>7SS</scope><scope>7T7</scope><scope>7TM</scope><scope>7X2</scope><scope>7XB</scope><scope>88I</scope><scope>8FD</scope><scope>8FE</scope><scope>8FH</scope><scope>8FK</scope><scope>ABUWG</scope><scope>AEUYN</scope><scope>AFKRA</scope><scope>ATCPS</scope><scope>AZQEC</scope><scope>BENPR</scope><scope>BHPHI</scope><scope>C1K</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FR3</scope><scope>GNUQQ</scope><scope>HCIFZ</scope><scope>M0K</scope><scope>M2P</scope><scope>M7N</scope><scope>P64</scope><scope>PATMY</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>PYCSY</scope><scope>Q9U</scope><scope>RC3</scope></search><sort><creationdate>20170401</creationdate><title>Linkage map construction and QTL identification of P-deficiency tolerance in Oryza rufipogon Griff. at early seedling stage</title><author>Luo, Xiang-Dong ; Liu, Jian ; Dai, Liang-Fang ; Zhang, Fan-Tao ; Wan, Yong ; Xie, Jian-Kun</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c355t-a97b2bdf8e154e14acce6f096928331f6eb69be8041f2c0b8c0aa04a680024433</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2017</creationdate><topic>Biomedical and Life Sciences</topic><topic>Biotechnology</topic><topic>Chromosomes</topic><topic>Cloning</topic><topic>Gene mapping</topic><topic>Genes</topic><topic>Genetic aspects</topic><topic>Life Sciences</topic><topic>Phenotypic variations</topic><topic>Phosphorus</topic><topic>Plant Genetics and Genomics</topic><topic>Plant Pathology</topic><topic>Plant Physiology</topic><topic>Plant Sciences</topic><topic>Quantitative genetics</topic><topic>Rice</topic><topic>Seedlings</topic><topic>Studies</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Luo, Xiang-Dong</creatorcontrib><creatorcontrib>Liu, Jian</creatorcontrib><creatorcontrib>Dai, Liang-Fang</creatorcontrib><creatorcontrib>Zhang, Fan-Tao</creatorcontrib><creatorcontrib>Wan, Yong</creatorcontrib><creatorcontrib>Xie, Jian-Kun</creatorcontrib><collection>CrossRef</collection><collection>ProQuest Central (Corporate)</collection><collection>Ecology Abstracts</collection><collection>Entomology Abstracts (Full archive)</collection><collection>Industrial and Applied Microbiology Abstracts (Microbiology A)</collection><collection>Nucleic Acids Abstracts</collection><collection>Agricultural Science Collection</collection><collection>ProQuest Central (purchase pre-March 2016)</collection><collection>Science Database (Alumni Edition)</collection><collection>Technology Research Database</collection><collection>ProQuest SciTech Collection</collection><collection>ProQuest Natural Science Collection</collection><collection>ProQuest Central (Alumni) (purchase pre-March 2016)</collection><collection>ProQuest Central (Alumni Edition)</collection><collection>ProQuest One Sustainability</collection><collection>ProQuest Central UK/Ireland</collection><collection>Agricultural & Environmental Science Collection</collection><collection>ProQuest Central Essentials</collection><collection>ProQuest Central</collection><collection>Natural Science Collection</collection><collection>Environmental Sciences and Pollution Management</collection><collection>ProQuest One Community College</collection><collection>ProQuest Central Korea</collection><collection>Engineering Research Database</collection><collection>ProQuest Central Student</collection><collection>SciTech Premium Collection</collection><collection>Agricultural Science Database</collection><collection>Science Database</collection><collection>Algology Mycology and Protozoology Abstracts (Microbiology C)</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Environmental Science Database</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>Environmental Science Collection</collection><collection>ProQuest Central Basic</collection><collection>Genetics Abstracts</collection><jtitle>Euphytica</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Luo, Xiang-Dong</au><au>Liu, Jian</au><au>Dai, Liang-Fang</au><au>Zhang, Fan-Tao</au><au>Wan, Yong</au><au>Xie, Jian-Kun</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Linkage map construction and QTL identification of P-deficiency tolerance in Oryza rufipogon Griff. at early seedling stage</atitle><jtitle>Euphytica</jtitle><stitle>Euphytica</stitle><date>2017-04-01</date><risdate>2017</risdate><volume>213</volume><issue>4</issue><spage>1</spage><pages>1-</pages><artnum>96</artnum><issn>0014-2336</issn><eissn>1573-5060</eissn><abstract>Low phosphorus availability is a major factor limiting rice productivity. In this study, a population of backcross recombinant inbred lines (BILs) derived from an inter-specific cross (
Oryza sativa
L. ×
O. rufipogon
Griff.) was used for genetic linkage map construction and quantitative trait locus (QTL) mapping. The results showed that a linkage map consisting of 153 markers was constructed. Twenty-one out of 231 BILs were tolerant of low-phosphorus according to the index to P-deficiency tolerance. Twenty-three QTLs on chromosomes 1, 2, 3, 7, 8, 9 and 11 were detected, of which eight QTLs showed high (22.93–37.32%) contribution to phenotypic variation. In addition, most of QTLs in this study (18 out of 23 QTLs) were located and overlapped on the chromosome 1, 3 and 11, which individually explained 6.07–34.70% phenotypic variation, indicating that there might be multiple main effect QTLs related to P-deficiency tolerance in
O. rufipogon
, and these QTLs might cluster in the same region. These results would provide helpful information for cloning and utilizing the P-deficiency tolerance-responsive genes from
O. rufipogon
.</abstract><cop>Dordrecht</cop><pub>Springer Netherlands</pub><doi>10.1007/s10681-017-1884-6</doi></addata></record> |
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| language | eng |
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| source | SpringerLink Journals |
| subjects | Biomedical and Life Sciences Biotechnology Chromosomes Cloning Gene mapping Genes Genetic aspects Life Sciences Phenotypic variations Phosphorus Plant Genetics and Genomics Plant Pathology Plant Physiology Plant Sciences Quantitative genetics Rice Seedlings Studies |
| title | Linkage map construction and QTL identification of P-deficiency tolerance in Oryza rufipogon Griff. at early seedling stage |
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