Efficient 3-D Reconstruction in Ultrasound Elastography via a Sparse Iteration Based on Markov Random Fields
Percutaneous needle-based liver ablation procedures are becoming increasingly common for the treatment of small isolated tumors in hepatocellular carcinoma patients who are not candidates for surgery. Rapid 3-D visualization of liver ablations has potential clinical value, because it can enable inte...
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description | Percutaneous needle-based liver ablation procedures are becoming increasingly common for the treatment of small isolated tumors in hepatocellular carcinoma patients who are not candidates for surgery. Rapid 3-D visualization of liver ablations has potential clinical value, because it can enable interventional radiologists to plan and execute needle-based ablation procedures with real time feedback. Ensuring the right volume of tissue is ablated is desirable to avoid recurrence of tumors from residual untreated cancerous cells. Shear wave velocity (SWV) measurements can be used as a surrogate for tissue stiffness to distinguish stiffer ablated regions from softer untreated tissue. This paper extends the previously reported sheaf reconstruction method to generate complete 3-D visualizations of SWVs without resorting to an approximate intermediate step of reconstructing transverse C planes. The noisy data are modeled using a Markov random field, and a computationally tractable reconstruction algorithm that can handle grids with millions of points is developed. Results from simulated ellipsoidal inclusion data show that this algorithm outperforms standard nearest neighbor interpolation by an order of magnitude in mean squared reconstruction error. Results from the phantom experiments show that it also provides a higher contrast-to-noise ratio by almost 2 dB and better signal-to-noise ratio in the stiff inclusion by over 2 dB compared with nearest neighbor interpolation and has lower computational complexity than linear and spline interpolation. |
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Rapid 3-D visualization of liver ablations has potential clinical value, because it can enable interventional radiologists to plan and execute needle-based ablation procedures with real time feedback. Ensuring the right volume of tissue is ablated is desirable to avoid recurrence of tumors from residual untreated cancerous cells. Shear wave velocity (SWV) measurements can be used as a surrogate for tissue stiffness to distinguish stiffer ablated regions from softer untreated tissue. This paper extends the previously reported sheaf reconstruction method to generate complete 3-D visualizations of SWVs without resorting to an approximate intermediate step of reconstructing transverse C planes. The noisy data are modeled using a Markov random field, and a computationally tractable reconstruction algorithm that can handle grids with millions of points is developed. Results from simulated ellipsoidal inclusion data show that this algorithm outperforms standard nearest neighbor interpolation by an order of magnitude in mean squared reconstruction error. Results from the phantom experiments show that it also provides a higher contrast-to-noise ratio by almost 2 dB and better signal-to-noise ratio in the stiff inclusion by over 2 dB compared with nearest neighbor interpolation and has lower computational complexity than linear and spline interpolation.</description><identifier>ISSN: 0885-3010</identifier><identifier>EISSN: 1525-8955</identifier><identifier>DOI: 10.1109/TUFFC.2016.2633429</identifier><identifier>PMID: 27913340</identifier><identifier>CODEN: ITUCER</identifier><language>eng</language><publisher>United States: IEEE</publisher><subject>3-D reconstruction ; Ablation ; Ablation Techniques ; Acoustics ; Algorithms ; Elasticity Imaging Techniques - methods ; Elastography ; electrode vibration ; Fields (mathematics) ; Frequency control ; Image reconstruction ; Imaging, Three-Dimensional - methods ; Interpolation ; Ising model ; Liver ; Markov Chains ; Markov random field (MRF) ; Noise levels ; Phantoms, Imaging ; sheaf ; shear wave elastography ; Signal to noise ratio ; Surgery, Computer-Assisted ; Three-dimensional displays ; Tumors ; Ultrasonic imaging ; ultrasound ; Wave velocity</subject><ispartof>IEEE transactions on ultrasonics, ferroelectrics, and frequency control, 2017-03, Vol.64 (3), p.491-499</ispartof><rights>Copyright The Institute of Electrical and Electronics Engineers, Inc. (IEEE) 2017</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c395t-862fd842ec6e62b191760f83f4befe73b8c060f12f111e4da83b806f583d7db33</citedby><cites>FETCH-LOGICAL-c395t-862fd842ec6e62b191760f83f4befe73b8c060f12f111e4da83b806f583d7db33</cites><orcidid>0000-0002-3695-5891</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktohtml>$$Uhttps://ieeexplore.ieee.org/document/7762190$$EHTML$$P50$$Gieee$$H</linktohtml><link.rule.ids>314,780,784,796,27924,27925,54758</link.rule.ids><linktorsrc>$$Uhttps://ieeexplore.ieee.org/document/7762190$$EView_record_in_IEEE$$FView_record_in_$$GIEEE</linktorsrc><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/27913340$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Ingle, Atul</creatorcontrib><creatorcontrib>Varghese, Tomy</creatorcontrib><creatorcontrib>Sethares, William A.</creatorcontrib><title>Efficient 3-D Reconstruction in Ultrasound Elastography via a Sparse Iteration Based on Markov Random Fields</title><title>IEEE transactions on ultrasonics, ferroelectrics, and frequency control</title><addtitle>T-UFFC</addtitle><addtitle>IEEE Trans Ultrason Ferroelectr Freq Control</addtitle><description>Percutaneous needle-based liver ablation procedures are becoming increasingly common for the treatment of small isolated tumors in hepatocellular carcinoma patients who are not candidates for surgery. Rapid 3-D visualization of liver ablations has potential clinical value, because it can enable interventional radiologists to plan and execute needle-based ablation procedures with real time feedback. Ensuring the right volume of tissue is ablated is desirable to avoid recurrence of tumors from residual untreated cancerous cells. Shear wave velocity (SWV) measurements can be used as a surrogate for tissue stiffness to distinguish stiffer ablated regions from softer untreated tissue. This paper extends the previously reported sheaf reconstruction method to generate complete 3-D visualizations of SWVs without resorting to an approximate intermediate step of reconstructing transverse C planes. The noisy data are modeled using a Markov random field, and a computationally tractable reconstruction algorithm that can handle grids with millions of points is developed. Results from simulated ellipsoidal inclusion data show that this algorithm outperforms standard nearest neighbor interpolation by an order of magnitude in mean squared reconstruction error. Results from the phantom experiments show that it also provides a higher contrast-to-noise ratio by almost 2 dB and better signal-to-noise ratio in the stiff inclusion by over 2 dB compared with nearest neighbor interpolation and has lower computational complexity than linear and spline interpolation.</description><subject>3-D reconstruction</subject><subject>Ablation</subject><subject>Ablation Techniques</subject><subject>Acoustics</subject><subject>Algorithms</subject><subject>Elasticity Imaging Techniques - methods</subject><subject>Elastography</subject><subject>electrode vibration</subject><subject>Fields (mathematics)</subject><subject>Frequency control</subject><subject>Image reconstruction</subject><subject>Imaging, Three-Dimensional - methods</subject><subject>Interpolation</subject><subject>Ising model</subject><subject>Liver</subject><subject>Markov Chains</subject><subject>Markov random field (MRF)</subject><subject>Noise levels</subject><subject>Phantoms, Imaging</subject><subject>sheaf</subject><subject>shear wave elastography</subject><subject>Signal to noise ratio</subject><subject>Surgery, Computer-Assisted</subject><subject>Three-dimensional displays</subject><subject>Tumors</subject><subject>Ultrasonic imaging</subject><subject>ultrasound</subject><subject>Wave velocity</subject><issn>0885-3010</issn><issn>1525-8955</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2017</creationdate><recordtype>article</recordtype><sourceid>RIE</sourceid><sourceid>EIF</sourceid><recordid>eNpdkUFvEzEQhS0EomnhD4CELHHhssFjr732EUJSKhUhlea88q7H4LJZB3u3Uv89ThN64DSjme89jeYR8gbYEoCZj7fbzWa15AzUkisham6ekQVILittpHxOFkxrWQkG7Iyc53zHGNS14S_JGW8MFAFbkGHtfegDjhMV1Rd6g30c85TmfgpxpGGk22FKNsd5dHQ92DzFn8nufz3Q-2CppT_2NmWkVxMm-6j4bDM6WppvNv2O9_TGji7u6Cbg4PIr8sLbIePrU70g2836dvW1uv5-ebX6dF31wsip0op7p2uOvULFOzDQKOa18HWHHhvR6Z6VAXAPAFg7q8uIKS-1cI3rhLggH46--xT_zJindhdyj8NgR4xzbkHXhdWN4QV9_x96F-c0lusK1UgFUtUHQ36k-hRzTujbfQo7mx5aYO0hi_Yxi_aQRXvKoojenaznbofuSfLv-QV4ewQCIj6tm0ZxMEz8BVacjQE</recordid><startdate>20170301</startdate><enddate>20170301</enddate><creator>Ingle, Atul</creator><creator>Varghese, Tomy</creator><creator>Sethares, William A.</creator><general>IEEE</general><general>The Institute of Electrical and Electronics Engineers, Inc. (IEEE)</general><scope>97E</scope><scope>RIA</scope><scope>RIE</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7SP</scope><scope>7U5</scope><scope>8FD</scope><scope>F28</scope><scope>FR3</scope><scope>L7M</scope><scope>7X8</scope><orcidid>https://orcid.org/0000-0002-3695-5891</orcidid></search><sort><creationdate>20170301</creationdate><title>Efficient 3-D Reconstruction in Ultrasound Elastography via a Sparse Iteration Based on Markov Random Fields</title><author>Ingle, Atul ; Varghese, Tomy ; Sethares, William A.</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c395t-862fd842ec6e62b191760f83f4befe73b8c060f12f111e4da83b806f583d7db33</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2017</creationdate><topic>3-D reconstruction</topic><topic>Ablation</topic><topic>Ablation Techniques</topic><topic>Acoustics</topic><topic>Algorithms</topic><topic>Elasticity Imaging Techniques - methods</topic><topic>Elastography</topic><topic>electrode vibration</topic><topic>Fields (mathematics)</topic><topic>Frequency control</topic><topic>Image reconstruction</topic><topic>Imaging, Three-Dimensional - methods</topic><topic>Interpolation</topic><topic>Ising model</topic><topic>Liver</topic><topic>Markov Chains</topic><topic>Markov random field (MRF)</topic><topic>Noise levels</topic><topic>Phantoms, Imaging</topic><topic>sheaf</topic><topic>shear wave elastography</topic><topic>Signal to noise ratio</topic><topic>Surgery, Computer-Assisted</topic><topic>Three-dimensional displays</topic><topic>Tumors</topic><topic>Ultrasonic imaging</topic><topic>ultrasound</topic><topic>Wave velocity</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Ingle, Atul</creatorcontrib><creatorcontrib>Varghese, Tomy</creatorcontrib><creatorcontrib>Sethares, William A.</creatorcontrib><collection>IEEE All-Society Periodicals Package (ASPP) 2005-present</collection><collection>IEEE All-Society Periodicals Package (ASPP) 1998-Present</collection><collection>IEEE Electronic Library (IEL)</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Electronics & Communications Abstracts</collection><collection>Solid State and Superconductivity Abstracts</collection><collection>Technology Research Database</collection><collection>ANTE: Abstracts in New Technology & Engineering</collection><collection>Engineering Research Database</collection><collection>Advanced Technologies Database with Aerospace</collection><collection>MEDLINE - Academic</collection><jtitle>IEEE transactions on ultrasonics, ferroelectrics, and frequency control</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext_linktorsrc</fulltext></delivery><addata><au>Ingle, Atul</au><au>Varghese, Tomy</au><au>Sethares, William A.</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Efficient 3-D Reconstruction in Ultrasound Elastography via a Sparse Iteration Based on Markov Random Fields</atitle><jtitle>IEEE transactions on ultrasonics, ferroelectrics, and frequency control</jtitle><stitle>T-UFFC</stitle><addtitle>IEEE Trans Ultrason Ferroelectr Freq Control</addtitle><date>2017-03-01</date><risdate>2017</risdate><volume>64</volume><issue>3</issue><spage>491</spage><epage>499</epage><pages>491-499</pages><issn>0885-3010</issn><eissn>1525-8955</eissn><coden>ITUCER</coden><abstract>Percutaneous needle-based liver ablation procedures are becoming increasingly common for the treatment of small isolated tumors in hepatocellular carcinoma patients who are not candidates for surgery. Rapid 3-D visualization of liver ablations has potential clinical value, because it can enable interventional radiologists to plan and execute needle-based ablation procedures with real time feedback. Ensuring the right volume of tissue is ablated is desirable to avoid recurrence of tumors from residual untreated cancerous cells. Shear wave velocity (SWV) measurements can be used as a surrogate for tissue stiffness to distinguish stiffer ablated regions from softer untreated tissue. This paper extends the previously reported sheaf reconstruction method to generate complete 3-D visualizations of SWVs without resorting to an approximate intermediate step of reconstructing transverse C planes. The noisy data are modeled using a Markov random field, and a computationally tractable reconstruction algorithm that can handle grids with millions of points is developed. Results from simulated ellipsoidal inclusion data show that this algorithm outperforms standard nearest neighbor interpolation by an order of magnitude in mean squared reconstruction error. Results from the phantom experiments show that it also provides a higher contrast-to-noise ratio by almost 2 dB and better signal-to-noise ratio in the stiff inclusion by over 2 dB compared with nearest neighbor interpolation and has lower computational complexity than linear and spline interpolation.</abstract><cop>United States</cop><pub>IEEE</pub><pmid>27913340</pmid><doi>10.1109/TUFFC.2016.2633429</doi><tpages>9</tpages><orcidid>https://orcid.org/0000-0002-3695-5891</orcidid><oa>free_for_read</oa></addata></record> |
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subjects | 3-D reconstruction Ablation Ablation Techniques Acoustics Algorithms Elasticity Imaging Techniques - methods Elastography electrode vibration Fields (mathematics) Frequency control Image reconstruction Imaging, Three-Dimensional - methods Interpolation Ising model Liver Markov Chains Markov random field (MRF) Noise levels Phantoms, Imaging sheaf shear wave elastography Signal to noise ratio Surgery, Computer-Assisted Three-dimensional displays Tumors Ultrasonic imaging ultrasound Wave velocity |
title | Efficient 3-D Reconstruction in Ultrasound Elastography via a Sparse Iteration Based on Markov Random Fields |
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