putative BABY BOOM-like gene (CaBBM) is expressed in embryogenic calli and embryogenic cell suspension culture of Coffea arabica L
The acquisition of embryogenic cell suspension (ECS) cultures has been one of the main objectives to maximize clonal propagation of the coffee plant. However, the majority of somatic embryogenesis induction requirements are genotype-dependent. Therefore, molecular markers linked to the embryogenic t...
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| Veröffentlicht in: | In vitro cellular & developmental biology. Plant 2015-02, Vol.51 (1), p.93-101 |
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| creator | Silva, Anderson Tadeu Barduche, Douglas do Livramento, Kalynka Gabriella Paiva, Luciano Vilela |
| description | The acquisition of embryogenic cell suspension (ECS) cultures has been one of the main objectives to maximize clonal propagation of the coffee plant. However, the majority of somatic embryogenesis induction requirements are genotype-dependent. Therefore, molecular markers linked to the embryogenic transition events may be useful. The BABY BOOM (BBM) gene can be considered as one of those markers, as it is related to the embryogenic process and to cell proliferation. BBM homologous sequences were obtained from Expressed Sequence Tags (ESTs) in a databank generated by the Brazilian Coffee Genome Project. We selected EST-contigs that showed similarities with BBM sequence from different species. Two EST-contigs (C2 and C9) were expressed in silico in cellular suspension libraries and embryogenic calli of coffee. Contig C9, defined as BBM-like (CaBBM), presented similarity with BBM genes and showed 2-fold change in expression in ECS relative to embryogenic calli (EC). Contig C2, on the other hand, was related to the ERF-like family. It showed basal expression in non-embryogenic calli (NEC) and approximately 66- and 311-fold less in ECS and EC compared with CaBBM in the same samples, respectively. These data suggest that CaBBM is likely to be a BBM ortholog in Coffea arabica, which has potential for use as a molecular marker to further increase the methodological efficiency of in vitro culture of coffee. |
| doi_str_mv | 10.1007/s11627-014-9643-z |
| format | Article |
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However, the majority of somatic embryogenesis induction requirements are genotype-dependent. Therefore, molecular markers linked to the embryogenic transition events may be useful. The BABY BOOM (BBM) gene can be considered as one of those markers, as it is related to the embryogenic process and to cell proliferation. BBM homologous sequences were obtained from Expressed Sequence Tags (ESTs) in a databank generated by the Brazilian Coffee Genome Project. We selected EST-contigs that showed similarities with BBM sequence from different species. Two EST-contigs (C2 and C9) were expressed in silico in cellular suspension libraries and embryogenic calli of coffee. Contig C9, defined as BBM-like (CaBBM), presented similarity with BBM genes and showed 2-fold change in expression in ECS relative to embryogenic calli (EC). Contig C2, on the other hand, was related to the ERF-like family. It showed basal expression in non-embryogenic calli (NEC) and approximately 66- and 311-fold less in ECS and EC compared with CaBBM in the same samples, respectively. These data suggest that CaBBM is likely to be a BBM ortholog in Coffea arabica, which has potential for use as a molecular marker to further increase the methodological efficiency of in vitro culture of coffee.</description><identifier>ISSN: 1054-5476</identifier><identifier>EISSN: 1475-2689</identifier><identifier>DOI: 10.1007/s11627-014-9643-z</identifier><language>eng</language><publisher>Boston: Springer-Verlag</publisher><subject>Acquisitions & mergers ; Algae ; Biomedical and Life Sciences ; callus ; Cell Biology ; cell proliferation ; cell suspension culture ; Coffea arabica ; Coffee ; Developmental Biology ; Embryonic growth stage ; Embryos ; expressed sequence tags ; Gene expression ; genes ; genetic markers ; Genomes ; Life Sciences ; Plant Breeding/Biotechnology ; Plant Genetics and Genomics ; Plant Sciences ; PLANT TISSUE CULTURE ; Proteins ; sequence homology ; somatic embryogenesis ; Transcription factors</subject><ispartof>In vitro cellular & developmental biology. Plant, 2015-02, Vol.51 (1), p.93-101</ispartof><rights>2015 Society for In Vitro Biology</rights><rights>The Society for In Vitro Biology 2014</rights><rights>Copyright Society for In Vitro Biology Mar 2015</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c432t-e0ffd17ca35a1a5758b718481d4a7f0eb02e80c49157f34e3c7ddc404e7b1dcb3</citedby><cites>FETCH-LOGICAL-c432t-e0ffd17ca35a1a5758b718481d4a7f0eb02e80c49157f34e3c7ddc404e7b1dcb3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.jstor.org/stable/pdf/24596722$$EPDF$$P50$$Gjstor$$H</linktopdf><linktohtml>$$Uhttps://www.jstor.org/stable/24596722$$EHTML$$P50$$Gjstor$$H</linktohtml><link.rule.ids>314,776,780,799,27903,27904,41467,42536,51298,57996,58229</link.rule.ids></links><search><creatorcontrib>Silva, Anderson Tadeu</creatorcontrib><creatorcontrib>Barduche, Douglas</creatorcontrib><creatorcontrib>do Livramento, Kalynka Gabriella</creatorcontrib><creatorcontrib>Paiva, Luciano Vilela</creatorcontrib><title>putative BABY BOOM-like gene (CaBBM) is expressed in embryogenic calli and embryogenic cell suspension culture of Coffea arabica L</title><title>In vitro cellular & developmental biology. Plant</title><addtitle>In Vitro Cell.Dev.Biol.-Plant</addtitle><description>The acquisition of embryogenic cell suspension (ECS) cultures has been one of the main objectives to maximize clonal propagation of the coffee plant. However, the majority of somatic embryogenesis induction requirements are genotype-dependent. Therefore, molecular markers linked to the embryogenic transition events may be useful. The BABY BOOM (BBM) gene can be considered as one of those markers, as it is related to the embryogenic process and to cell proliferation. BBM homologous sequences were obtained from Expressed Sequence Tags (ESTs) in a databank generated by the Brazilian Coffee Genome Project. We selected EST-contigs that showed similarities with BBM sequence from different species. Two EST-contigs (C2 and C9) were expressed in silico in cellular suspension libraries and embryogenic calli of coffee. Contig C9, defined as BBM-like (CaBBM), presented similarity with BBM genes and showed 2-fold change in expression in ECS relative to embryogenic calli (EC). Contig C2, on the other hand, was related to the ERF-like family. It showed basal expression in non-embryogenic calli (NEC) and approximately 66- and 311-fold less in ECS and EC compared with CaBBM in the same samples, respectively. These data suggest that CaBBM is likely to be a BBM ortholog in Coffea arabica, which has potential for use as a molecular marker to further increase the methodological efficiency of in vitro culture of coffee.</description><subject>Acquisitions & mergers</subject><subject>Algae</subject><subject>Biomedical and Life Sciences</subject><subject>callus</subject><subject>Cell Biology</subject><subject>cell proliferation</subject><subject>cell suspension culture</subject><subject>Coffea arabica</subject><subject>Coffee</subject><subject>Developmental Biology</subject><subject>Embryonic growth stage</subject><subject>Embryos</subject><subject>expressed sequence tags</subject><subject>Gene expression</subject><subject>genes</subject><subject>genetic markers</subject><subject>Genomes</subject><subject>Life Sciences</subject><subject>Plant Breeding/Biotechnology</subject><subject>Plant Genetics and Genomics</subject><subject>Plant Sciences</subject><subject>PLANT TISSUE CULTURE</subject><subject>Proteins</subject><subject>sequence homology</subject><subject>somatic embryogenesis</subject><subject>Transcription factors</subject><issn>1054-5476</issn><issn>1475-2689</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2015</creationdate><recordtype>article</recordtype><sourceid>ABUWG</sourceid><sourceid>AFKRA</sourceid><sourceid>AZQEC</sourceid><sourceid>BENPR</sourceid><sourceid>CCPQU</sourceid><sourceid>DWQXO</sourceid><sourceid>GNUQQ</sourceid><recordid>eNp9UEtv1DAQjhBIlMIP4ICwxAUOaWf8iLPHZsVL2moP0AMny3HGKy9pHOwE0R755aQKQvTS04zme42-oniJcIYA-jwjVlyXgLLcVFKUt4-KE5RalbyqN4-XHZQsldTV0-JZzkcAQEB9Uvwe58lO4Sex5qL5xpr9_rLsw3diBxqIvd3aprl8x0Jm9GtMlDN1LAyMrtt0ExdKcMzZvg_MDt39K_U9y3MeacghDszN_TQnYtGzbfSeLLPJtsFZtntePPG2z_Ti7zwtrj68_7r9VO72Hz9vL3alk4JPJYH3HWpnhbJolVZ1q7GWNXbSag_UAqcanNyg0l5IEk53nZMgSbfYuVacFm9W3zHFHzPlyRzjnIYl0mCtlRAVarGwcGW5FHNO5M2YwrVNNwbB3FVt1qrNUrW5q9rcLhq-avLCHQ6U_nN-QPRqFR3zFNO_FC7VptKcL_jrFfc2GntIIZurLxxQAXAQuDz8BwG_lLI</recordid><startdate>20150201</startdate><enddate>20150201</enddate><creator>Silva, Anderson Tadeu</creator><creator>Barduche, Douglas</creator><creator>do Livramento, Kalynka Gabriella</creator><creator>Paiva, Luciano Vilela</creator><general>Springer-Verlag</general><general>Springer</general><general>Springer US</general><general>Springer Nature B.V</general><scope>FBQ</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>4T-</scope><scope>4U-</scope><scope>7X2</scope><scope>7X7</scope><scope>7XB</scope><scope>88A</scope><scope>88I</scope><scope>8AF</scope><scope>8AO</scope><scope>8FE</scope><scope>8FH</scope><scope>8FI</scope><scope>8FJ</scope><scope>8FK</scope><scope>ABUWG</scope><scope>AEUYN</scope><scope>AFKRA</scope><scope>ATCPS</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BHPHI</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FYUFA</scope><scope>GHDGH</scope><scope>GNUQQ</scope><scope>HCIFZ</scope><scope>K9.</scope><scope>LK8</scope><scope>M0K</scope><scope>M0S</scope><scope>M2P</scope><scope>M7P</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>Q9U</scope><scope>S0X</scope></search><sort><creationdate>20150201</creationdate><title>putative BABY BOOM-like gene (CaBBM) is expressed in embryogenic calli and embryogenic cell suspension culture of Coffea arabica L</title><author>Silva, Anderson Tadeu ; Barduche, Douglas ; do Livramento, Kalynka Gabriella ; Paiva, Luciano Vilela</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c432t-e0ffd17ca35a1a5758b718481d4a7f0eb02e80c49157f34e3c7ddc404e7b1dcb3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2015</creationdate><topic>Acquisitions & mergers</topic><topic>Algae</topic><topic>Biomedical and Life Sciences</topic><topic>callus</topic><topic>Cell Biology</topic><topic>cell proliferation</topic><topic>cell suspension culture</topic><topic>Coffea arabica</topic><topic>Coffee</topic><topic>Developmental Biology</topic><topic>Embryonic growth stage</topic><topic>Embryos</topic><topic>expressed sequence tags</topic><topic>Gene expression</topic><topic>genes</topic><topic>genetic markers</topic><topic>Genomes</topic><topic>Life Sciences</topic><topic>Plant Breeding/Biotechnology</topic><topic>Plant Genetics and Genomics</topic><topic>Plant Sciences</topic><topic>PLANT TISSUE CULTURE</topic><topic>Proteins</topic><topic>sequence homology</topic><topic>somatic embryogenesis</topic><topic>Transcription factors</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Silva, Anderson Tadeu</creatorcontrib><creatorcontrib>Barduche, Douglas</creatorcontrib><creatorcontrib>do Livramento, Kalynka Gabriella</creatorcontrib><creatorcontrib>Paiva, Luciano Vilela</creatorcontrib><collection>AGRIS</collection><collection>CrossRef</collection><collection>ProQuest Central (Corporate)</collection><collection>Docstoc</collection><collection>University Readers</collection><collection>Agricultural Science Collection</collection><collection>Health & Medical Collection</collection><collection>ProQuest Central (purchase pre-March 2016)</collection><collection>Biology Database (Alumni Edition)</collection><collection>Science Database (Alumni Edition)</collection><collection>STEM Database</collection><collection>ProQuest Pharma Collection</collection><collection>ProQuest SciTech Collection</collection><collection>ProQuest Natural Science Collection</collection><collection>Hospital Premium Collection</collection><collection>Hospital Premium Collection (Alumni Edition)</collection><collection>ProQuest Central (Alumni) (purchase pre-March 2016)</collection><collection>ProQuest Central (Alumni)</collection><collection>ProQuest One Sustainability</collection><collection>ProQuest Central</collection><collection>Agricultural & Environmental Science Collection</collection><collection>ProQuest Central Essentials</collection><collection>Biological Science Collection</collection><collection>ProQuest Central</collection><collection>ProQuest Natural Science Collection</collection><collection>ProQuest One Community College</collection><collection>ProQuest Central</collection><collection>Health Research Premium Collection</collection><collection>Health Research Premium Collection (Alumni)</collection><collection>ProQuest Central Student</collection><collection>SciTech Premium Collection</collection><collection>ProQuest Health & Medical Complete (Alumni)</collection><collection>ProQuest Biological Science Collection</collection><collection>Agricultural Science Database</collection><collection>Health & Medical Collection (Alumni Edition)</collection><collection>ProQuest Science Journals</collection><collection>Biological Science Database</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>ProQuest Central Basic</collection><collection>SIRS Editorial</collection><jtitle>In vitro cellular & developmental biology. Plant</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Silva, Anderson Tadeu</au><au>Barduche, Douglas</au><au>do Livramento, Kalynka Gabriella</au><au>Paiva, Luciano Vilela</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>putative BABY BOOM-like gene (CaBBM) is expressed in embryogenic calli and embryogenic cell suspension culture of Coffea arabica L</atitle><jtitle>In vitro cellular & developmental biology. Plant</jtitle><stitle>In Vitro Cell.Dev.Biol.-Plant</stitle><date>2015-02-01</date><risdate>2015</risdate><volume>51</volume><issue>1</issue><spage>93</spage><epage>101</epage><pages>93-101</pages><issn>1054-5476</issn><eissn>1475-2689</eissn><abstract>The acquisition of embryogenic cell suspension (ECS) cultures has been one of the main objectives to maximize clonal propagation of the coffee plant. However, the majority of somatic embryogenesis induction requirements are genotype-dependent. Therefore, molecular markers linked to the embryogenic transition events may be useful. The BABY BOOM (BBM) gene can be considered as one of those markers, as it is related to the embryogenic process and to cell proliferation. BBM homologous sequences were obtained from Expressed Sequence Tags (ESTs) in a databank generated by the Brazilian Coffee Genome Project. We selected EST-contigs that showed similarities with BBM sequence from different species. Two EST-contigs (C2 and C9) were expressed in silico in cellular suspension libraries and embryogenic calli of coffee. Contig C9, defined as BBM-like (CaBBM), presented similarity with BBM genes and showed 2-fold change in expression in ECS relative to embryogenic calli (EC). Contig C2, on the other hand, was related to the ERF-like family. It showed basal expression in non-embryogenic calli (NEC) and approximately 66- and 311-fold less in ECS and EC compared with CaBBM in the same samples, respectively. These data suggest that CaBBM is likely to be a BBM ortholog in Coffea arabica, which has potential for use as a molecular marker to further increase the methodological efficiency of in vitro culture of coffee.</abstract><cop>Boston</cop><pub>Springer-Verlag</pub><doi>10.1007/s11627-014-9643-z</doi><tpages>9</tpages></addata></record> |
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| subjects | Acquisitions & mergers Algae Biomedical and Life Sciences callus Cell Biology cell proliferation cell suspension culture Coffea arabica Coffee Developmental Biology Embryonic growth stage Embryos expressed sequence tags Gene expression genes genetic markers Genomes Life Sciences Plant Breeding/Biotechnology Plant Genetics and Genomics Plant Sciences PLANT TISSUE CULTURE Proteins sequence homology somatic embryogenesis Transcription factors |
| title | putative BABY BOOM-like gene (CaBBM) is expressed in embryogenic calli and embryogenic cell suspension culture of Coffea arabica L |
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