Characterization of Clarias gariepinus mitochondrial genome sequence and a comparative analysis with other catfishes
Clarias gariepinus is an economically important fish belonging to Siluriformes. In order to understand the characterization of catfishes, the complete mitochondrial genome sequence of the African catfish C. gariepinus was determined using 17 pairs of primers. The complete mitogenome is 16,508 bp in...
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| Veröffentlicht in: | Biológia 2015-09, Vol.70 (9), p.1245-1253 |
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| creator | Han, Chong Qiang Li Junqiu Xu Xiufeng Li Jianrong Huang |
| description | Clarias gariepinus is an economically important fish belonging to Siluriformes. In order to understand the characterization of catfishes, the complete mitochondrial genome sequence of the African catfish C. gariepinus was determined using 17 pairs of primers. The complete mitogenome is 16,508 bp in length and contains 37 mitochondrial genes (13 protein-coding, two rRNA, and 22 tRNA genes) and a control region as in most other fishes. Moreover, a comparison of C. gariepinus with Clarias batrachus, Clarias fuscus and Clarias sp. NM-2010 indicated that the four mitogenomics were similar in length, total nucleotide compositions and codon usage patterns, but different in 13 protein-coding genes, control region and other aspects. The complete mitochondrial genome sequence of C. gariepinus would contribute to better understanding of population genetics, conservation, biogeography and evolution of this species. |
| doi_str_mv | 10.1515/biolog-2015-0145 |
| format | Article |
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In order to understand the characterization of catfishes, the complete mitochondrial genome sequence of the African catfish C. gariepinus was determined using 17 pairs of primers. The complete mitogenome is 16,508 bp in length and contains 37 mitochondrial genes (13 protein-coding, two rRNA, and 22 tRNA genes) and a control region as in most other fishes. Moreover, a comparison of C. gariepinus with Clarias batrachus, Clarias fuscus and Clarias sp. NM-2010 indicated that the four mitogenomics were similar in length, total nucleotide compositions and codon usage patterns, but different in 13 protein-coding genes, control region and other aspects. The complete mitochondrial genome sequence of C. gariepinus would contribute to better understanding of population genetics, conservation, biogeography and evolution of this species.</description><identifier>ISSN: 1336-9563</identifier><identifier>ISSN: 0006-3088</identifier><identifier>EISSN: 1336-9563</identifier><identifier>DOI: 10.1515/biolog-2015-0145</identifier><language>eng</language><publisher>Cham: De Gruyter Open</publisher><subject>Biogeography ; catfish ; Cell Biology ; Clarias batrachus ; Clarias gariepinus ; Conservation genetics ; Economic importance ; gene order ; genes ; Genetics ; genome structure ; Life Sciences ; Microbiology ; mitochondrial genome ; nucleotide sequences ; Plant Sciences ; Population genetics ; ribosomal RNA ; Siluriformes ; transfer RNA ; Zoology</subject><ispartof>Biológia, 2015-09, Vol.70 (9), p.1245-1253</ispartof><rights>Slovak Academy of Sciences 2015</rights><rights>Copyright Walter de Gruyter GmbH 2015</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c393t-c081985f1877195b0e48416585d96c7eaec539bb79ada2f511fe6aac3853fdf43</citedby><cites>FETCH-LOGICAL-c393t-c081985f1877195b0e48416585d96c7eaec539bb79ada2f511fe6aac3853fdf43</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://link.springer.com/content/pdf/10.1515/biolog-2015-0145$$EPDF$$P50$$Gspringer$$H</linktopdf><linktohtml>$$Uhttps://link.springer.com/10.1515/biolog-2015-0145$$EHTML$$P50$$Gspringer$$H</linktohtml><link.rule.ids>315,782,786,27931,27932,41495,42564,51326</link.rule.ids></links><search><creatorcontrib>Han, Chong</creatorcontrib><creatorcontrib>Qiang Li</creatorcontrib><creatorcontrib>Junqiu Xu</creatorcontrib><creatorcontrib>Xiufeng Li</creatorcontrib><creatorcontrib>Jianrong Huang</creatorcontrib><title>Characterization of Clarias gariepinus mitochondrial genome sequence and a comparative analysis with other catfishes</title><title>Biológia</title><addtitle>Biologia</addtitle><description>Clarias gariepinus is an economically important fish belonging to Siluriformes. In order to understand the characterization of catfishes, the complete mitochondrial genome sequence of the African catfish C. gariepinus was determined using 17 pairs of primers. The complete mitogenome is 16,508 bp in length and contains 37 mitochondrial genes (13 protein-coding, two rRNA, and 22 tRNA genes) and a control region as in most other fishes. Moreover, a comparison of C. gariepinus with Clarias batrachus, Clarias fuscus and Clarias sp. NM-2010 indicated that the four mitogenomics were similar in length, total nucleotide compositions and codon usage patterns, but different in 13 protein-coding genes, control region and other aspects. The complete mitochondrial genome sequence of C. gariepinus would contribute to better understanding of population genetics, conservation, biogeography and evolution of this species.</description><subject>Biogeography</subject><subject>catfish</subject><subject>Cell Biology</subject><subject>Clarias batrachus</subject><subject>Clarias gariepinus</subject><subject>Conservation genetics</subject><subject>Economic importance</subject><subject>gene order</subject><subject>genes</subject><subject>Genetics</subject><subject>genome structure</subject><subject>Life Sciences</subject><subject>Microbiology</subject><subject>mitochondrial genome</subject><subject>nucleotide sequences</subject><subject>Plant Sciences</subject><subject>Population genetics</subject><subject>ribosomal RNA</subject><subject>Siluriformes</subject><subject>transfer RNA</subject><subject>Zoology</subject><issn>1336-9563</issn><issn>0006-3088</issn><issn>1336-9563</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2015</creationdate><recordtype>article</recordtype><sourceid>ABUWG</sourceid><sourceid>AFKRA</sourceid><sourceid>AZQEC</sourceid><sourceid>BENPR</sourceid><sourceid>CCPQU</sourceid><sourceid>DWQXO</sourceid><sourceid>GNUQQ</sourceid><recordid>eNqNkD1PwzAQhiMEEuVjZ8MSc8BXx0k8IVTxJSExQGfr6tiJqzQutgsqvx6XMLAgMd3Jd8_r05NlZ0AvgQO_WljXuzafUuA5hYLvZRNgrMwFL9n-r_4wOwphSWlRcQqTLM469Kii9vYTo3UDcYbMevQWA2lT0Ws7bAJZ2ehU54YmDXrS6sGtNAn6baMHpQkODUGi3GqdwqJ9371gvw02kA8bO-Jipz1RGI0NnQ4n2YHBPujTn3qcze9uX2cP-dPz_ePs5ilXTLCYK1qDqLmBuqpA8AXVRV1AyWveiFJVGrXiTCwWlcAGp4YDGF0iKlZzZhpTsOPsYsxde5cuDVEu3cany4KEqihKXnFRpy06binvQvDayLW3K_RbCVTu3MrRrdy5lTu3CbkekQ_sk7pGt36zTc2v_D_QigqYfifAmBDSZ0P7HzQx5yNj0ElsvQ1y_pLGJaUgyoJy9gWF_58B</recordid><startdate>20150901</startdate><enddate>20150901</enddate><creator>Han, Chong</creator><creator>Qiang Li</creator><creator>Junqiu Xu</creator><creator>Xiufeng Li</creator><creator>Jianrong Huang</creator><general>De Gruyter Open</general><general>Springer International Publishing</general><general>Springer Nature B.V</general><scope>FBQ</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7QG</scope><scope>7QL</scope><scope>7QP</scope><scope>7QR</scope><scope>7SN</scope><scope>7SS</scope><scope>7T5</scope><scope>7T7</scope><scope>7TK</scope><scope>7TM</scope><scope>7X7</scope><scope>7XB</scope><scope>88E</scope><scope>8FD</scope><scope>8FE</scope><scope>8FH</scope><scope>8FI</scope><scope>8FJ</scope><scope>8FK</scope><scope>ABUWG</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BHPHI</scope><scope>C1K</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FR3</scope><scope>FYUFA</scope><scope>GHDGH</scope><scope>GNUQQ</scope><scope>H94</scope><scope>HCIFZ</scope><scope>K9.</scope><scope>LK8</scope><scope>M0S</scope><scope>M1P</scope><scope>M7N</scope><scope>M7P</scope><scope>P64</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>RC3</scope></search><sort><creationdate>20150901</creationdate><title>Characterization of Clarias gariepinus mitochondrial genome sequence and a comparative analysis with other catfishes</title><author>Han, Chong ; Qiang Li ; Junqiu Xu ; Xiufeng Li ; Jianrong Huang</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c393t-c081985f1877195b0e48416585d96c7eaec539bb79ada2f511fe6aac3853fdf43</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2015</creationdate><topic>Biogeography</topic><topic>catfish</topic><topic>Cell Biology</topic><topic>Clarias batrachus</topic><topic>Clarias gariepinus</topic><topic>Conservation genetics</topic><topic>Economic importance</topic><topic>gene order</topic><topic>genes</topic><topic>Genetics</topic><topic>genome structure</topic><topic>Life Sciences</topic><topic>Microbiology</topic><topic>mitochondrial genome</topic><topic>nucleotide sequences</topic><topic>Plant Sciences</topic><topic>Population genetics</topic><topic>ribosomal RNA</topic><topic>Siluriformes</topic><topic>transfer RNA</topic><topic>Zoology</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Han, Chong</creatorcontrib><creatorcontrib>Qiang Li</creatorcontrib><creatorcontrib>Junqiu Xu</creatorcontrib><creatorcontrib>Xiufeng Li</creatorcontrib><creatorcontrib>Jianrong Huang</creatorcontrib><collection>AGRIS</collection><collection>CrossRef</collection><collection>ProQuest Central (Corporate)</collection><collection>Animal Behavior Abstracts</collection><collection>Bacteriology Abstracts (Microbiology B)</collection><collection>Calcium & Calcified Tissue Abstracts</collection><collection>Chemoreception Abstracts</collection><collection>Ecology Abstracts</collection><collection>Entomology Abstracts (Full archive)</collection><collection>Immunology Abstracts</collection><collection>Industrial and Applied Microbiology Abstracts (Microbiology A)</collection><collection>Neurosciences Abstracts</collection><collection>Nucleic Acids Abstracts</collection><collection>Health & Medical Collection</collection><collection>ProQuest Central (purchase pre-March 2016)</collection><collection>Medical Database (Alumni Edition)</collection><collection>Technology Research Database</collection><collection>ProQuest SciTech Collection</collection><collection>ProQuest Natural Science Collection</collection><collection>Hospital Premium Collection</collection><collection>Hospital Premium Collection (Alumni Edition)</collection><collection>ProQuest Central (Alumni) (purchase pre-March 2016)</collection><collection>ProQuest Central (Alumni Edition)</collection><collection>ProQuest Central UK/Ireland</collection><collection>ProQuest Central Essentials</collection><collection>Biological Science Collection</collection><collection>ProQuest Central</collection><collection>Natural Science Collection</collection><collection>Environmental Sciences and Pollution Management</collection><collection>ProQuest One Community College</collection><collection>ProQuest Central Korea</collection><collection>Engineering Research Database</collection><collection>Health Research Premium Collection</collection><collection>Health Research Premium Collection (Alumni)</collection><collection>ProQuest Central Student</collection><collection>AIDS and Cancer Research Abstracts</collection><collection>SciTech Premium Collection</collection><collection>ProQuest Health & Medical Complete (Alumni)</collection><collection>ProQuest Biological Science Collection</collection><collection>Health & Medical Collection (Alumni Edition)</collection><collection>Medical Database</collection><collection>Algology Mycology and Protozoology Abstracts (Microbiology C)</collection><collection>Biological Science Database</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>Genetics Abstracts</collection><jtitle>Biológia</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Han, Chong</au><au>Qiang Li</au><au>Junqiu Xu</au><au>Xiufeng Li</au><au>Jianrong Huang</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Characterization of Clarias gariepinus mitochondrial genome sequence and a comparative analysis with other catfishes</atitle><jtitle>Biológia</jtitle><stitle>Biologia</stitle><date>2015-09-01</date><risdate>2015</risdate><volume>70</volume><issue>9</issue><spage>1245</spage><epage>1253</epage><pages>1245-1253</pages><issn>1336-9563</issn><issn>0006-3088</issn><eissn>1336-9563</eissn><abstract>Clarias gariepinus is an economically important fish belonging to Siluriformes. In order to understand the characterization of catfishes, the complete mitochondrial genome sequence of the African catfish C. gariepinus was determined using 17 pairs of primers. The complete mitogenome is 16,508 bp in length and contains 37 mitochondrial genes (13 protein-coding, two rRNA, and 22 tRNA genes) and a control region as in most other fishes. Moreover, a comparison of C. gariepinus with Clarias batrachus, Clarias fuscus and Clarias sp. NM-2010 indicated that the four mitogenomics were similar in length, total nucleotide compositions and codon usage patterns, but different in 13 protein-coding genes, control region and other aspects. The complete mitochondrial genome sequence of C. gariepinus would contribute to better understanding of population genetics, conservation, biogeography and evolution of this species.</abstract><cop>Cham</cop><pub>De Gruyter Open</pub><doi>10.1515/biolog-2015-0145</doi><tpages>9</tpages></addata></record> |
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| subjects | Biogeography catfish Cell Biology Clarias batrachus Clarias gariepinus Conservation genetics Economic importance gene order genes Genetics genome structure Life Sciences Microbiology mitochondrial genome nucleotide sequences Plant Sciences Population genetics ribosomal RNA Siluriformes transfer RNA Zoology |
| title | Characterization of Clarias gariepinus mitochondrial genome sequence and a comparative analysis with other catfishes |
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