Enrichment of a Novel Marine Ammonia-Oxidizing Archaeon Obtained from Sand of an Eelgrass Zone
Ammonia-oxidizing archaea (AOA) are generally cultivated at ammonium concentrations of less than 2 mM. The physiology and abundance in the environment of AOA suggest an important role in the nitrogen cycle. We report here a novel marine ammonia-oxidizing crenarchaeote, strain NM25 belonged to ‘Candi...
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| Veröffentlicht in: | Microbes and Environments 2011, Vol.26(1), pp.23-29 |
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| creator | Matsutani, Naoki Nakagawa, Tatsunori Nakamura, Kyoko Takahashi, Reiji Yoshihara, Kiyoshi Tokuyama, Tatsuaki |
| description | Ammonia-oxidizing archaea (AOA) are generally cultivated at ammonium concentrations of less than 2 mM. The physiology and abundance in the environment of AOA suggest an important role in the nitrogen cycle. We report here a novel marine ammonia-oxidizing crenarchaeote, strain NM25 belonged to ‘Candidatus Nitrosopumilus’, that was enriched from coastal sand of an eelgrass zone and grew in a medium containing 15 mM ammonium at 30°C. A phylogenetic analysis based on the 16S rRNA gene revealed this crenarchaeote was related to the ammonia-oxidizing archaeon ‘Candidatus Nitrosopumilus maritimus’ strain SCM1, with 98.5% identity. The ammonia monooxygenase subunit A (amoA) gene of strain NM25 was less closely related to that of known cultivable AOA (>95%) and environmental clones (>97%). This finding suggests the existence of AOA adapted to high ammonium-containing environments. |
| doi_str_mv | 10.1264/jsme2.ME10156 |
| format | Article |
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The physiology and abundance in the environment of AOA suggest an important role in the nitrogen cycle. We report here a novel marine ammonia-oxidizing crenarchaeote, strain NM25 belonged to ‘Candidatus Nitrosopumilus’, that was enriched from coastal sand of an eelgrass zone and grew in a medium containing 15 mM ammonium at 30°C. A phylogenetic analysis based on the 16S rRNA gene revealed this crenarchaeote was related to the ammonia-oxidizing archaeon ‘Candidatus Nitrosopumilus maritimus’ strain SCM1, with 98.5% identity. The ammonia monooxygenase subunit A (amoA) gene of strain NM25 was less closely related to that of known cultivable AOA (>95%) and environmental clones (>97%). 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The physiology and abundance in the environment of AOA suggest an important role in the nitrogen cycle. We report here a novel marine ammonia-oxidizing crenarchaeote, strain NM25 belonged to ‘Candidatus Nitrosopumilus’, that was enriched from coastal sand of an eelgrass zone and grew in a medium containing 15 mM ammonium at 30°C. A phylogenetic analysis based on the 16S rRNA gene revealed this crenarchaeote was related to the ammonia-oxidizing archaeon ‘Candidatus Nitrosopumilus maritimus’ strain SCM1, with 98.5% identity. The ammonia monooxygenase subunit A (amoA) gene of strain NM25 was less closely related to that of known cultivable AOA (>95%) and environmental clones (>97%). 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| source | MEDLINE; Elektronische Zeitschriftenbibliothek - Frei zugängliche E-Journals; J-STAGE (Japan Science & Technology Information Aggregator, Electronic) Freely Available Titles - Japanese |
| subjects | Ammonia - metabolism ammonia-oxidizing archaea Archaea - classification Archaea - genetics Archaea - isolation & purification Archaea - metabolism Archaeal Proteins - genetics Archaeal Proteins - metabolism enrichment culture Geologic Sediments - microbiology Hydrocharitaceae - microbiology marine crenarchaeote Molecular Sequence Data nitrifying archaea Nitrosopumilus Oxidoreductases - genetics Oxidoreductases - metabolism Phylogeny Seawater - microbiology Silicon Dioxide - analysis |
| title | Enrichment of a Novel Marine Ammonia-Oxidizing Archaeon Obtained from Sand of an Eelgrass Zone |
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