Population Dynamics of Crenarchaeota and Euryarchaeota in the Mixing Front of River and Marine Waters
A transect from the Tomoe River Mouth through Shimizu Port to Suruga Bay, Japan, was examined between 2005 and 2009 to reveal the population dynamics of Crenarchaeota and Euryarchaeota in an estuary environment. Crenarchaeota tended to increase in abundance in waters deeper than 100 m compared with...
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| Veröffentlicht in: | Microbes and Environments 2010, Vol.25(2), pp.126-132 |
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| creator | Hao, Do Manh Tashiro, Tomokazu Kato, Miharu Sohrin, Rumi Ishibashi, Tomotaka Katsuyama, Chie Nagaosa, Kazuyo Kimura, Hiroyuki Thanh, Tran Duc Kato, Kenji |
| description | A transect from the Tomoe River Mouth through Shimizu Port to Suruga Bay, Japan, was examined between 2005 and 2009 to reveal the population dynamics of Crenarchaeota and Euryarchaeota in an estuary environment. Crenarchaeota tended to increase in abundance in waters deeper than 100 m compared with Euryarchaeota, and comprised 11% of total direct counts. Archaeal abundance was highest in the Tomoe River Mouth, with a strong negative correlation between surface euryarchaeal abundance and salinity (P |
| doi_str_mv | 10.1264/jsme2.ME10106 |
| format | Article |
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Crenarchaeota tended to increase in abundance in waters deeper than 100 m compared with Euryarchaeota, and comprised 11% of total direct counts. Archaeal abundance was highest in the Tomoe River Mouth, with a strong negative correlation between surface euryarchaeal abundance and salinity (P<0.001). The diversity index for the phylotypic archaeal community in the mouth was three times higher than that at sites St1-1m and St1-10m in the estuary, and OTUs represented most of the OTU groups at the sites. Three of the seven total OTUs, which comprised 83.6% of the 140 sequenced clones in the estuary, were related to the OTUs in the mouth with similarities higher than 97%. A significant proportion of the archaeal community appears to be derived from the Tomoe River. The two dominant phylotypes of the archaeal community in Shimizu Port, belonging to MGI and MGII, occurred ubiquitously.</description><identifier>ISSN: 1342-6311</identifier><identifier>EISSN: 1347-4405</identifier><identifier>DOI: 10.1264/jsme2.ME10106</identifier><identifier>PMID: 21576863</identifier><language>eng</language><publisher>Japan: Japanese Society of Microbial Ecology / Japanese Society of Soil Microbiology / Taiwan Society of Microbial Ecology / Japanese Society of Plant Microbe Interactions / Japanese Society for Extremophiles</publisher><subject>Bacteria - growth & development ; Bacteria - isolation & purification ; Base Sequence ; Colony Count, Microbial ; Crenarchaeota ; Crenarchaeota - classification ; Crenarchaeota - genetics ; Crenarchaeota - growth & development ; DNA, Archaeal - genetics ; DNA, Archaeal - isolation & purification ; DNA, Ribosomal - chemistry ; DNA, Ribosomal - genetics ; Environment ; Euryarchaeota ; Euryarchaeota - classification ; Euryarchaeota - genetics ; Euryarchaeota - growth & development ; Fresh Water - microbiology ; Japan ; Molecular Sequence Data ; Phylogeny ; Population Dynamics ; Rivers - microbiology ; RNA, Ribosomal, 16S - genetics ; Seawater - microbiology ; Sequence Analysis, DNA ; Shimizu Port ; Suruga Bay ; Tomoe River Mouth</subject><ispartof>Microbes and Environments, 2010, Vol.25(2), pp.126-132</ispartof><rights>Japanese Society of Microbial Ecology / Japanese Society of Soil Microbiology / Taiwan Society of Microbial Ecology</rights><rights>Copyright Japan Science and Technology Agency 2010</rights><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c624t-4a1976dd9b0c9a1e9d0001bc3000ba3b762501453e1bb03fd49751fbe6fc552a3</citedby><cites>FETCH-LOGICAL-c624t-4a1976dd9b0c9a1e9d0001bc3000ba3b762501453e1bb03fd49751fbe6fc552a3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>314,776,780,1877,4010,27900,27901,27902</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/21576863$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Hao, Do Manh</creatorcontrib><creatorcontrib>Tashiro, Tomokazu</creatorcontrib><creatorcontrib>Kato, Miharu</creatorcontrib><creatorcontrib>Sohrin, Rumi</creatorcontrib><creatorcontrib>Ishibashi, Tomotaka</creatorcontrib><creatorcontrib>Katsuyama, Chie</creatorcontrib><creatorcontrib>Nagaosa, Kazuyo</creatorcontrib><creatorcontrib>Kimura, Hiroyuki</creatorcontrib><creatorcontrib>Thanh, Tran Duc</creatorcontrib><creatorcontrib>Kato, Kenji</creatorcontrib><title>Population Dynamics of Crenarchaeota and Euryarchaeota in the Mixing Front of River and Marine Waters</title><title>Microbes and Environments</title><addtitle>Microbes Environ.</addtitle><description>A transect from the Tomoe River Mouth through Shimizu Port to Suruga Bay, Japan, was examined between 2005 and 2009 to reveal the population dynamics of Crenarchaeota and Euryarchaeota in an estuary environment. 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The two dominant phylotypes of the archaeal community in Shimizu Port, belonging to MGI and MGII, occurred ubiquitously.</description><subject>Bacteria - growth & development</subject><subject>Bacteria - isolation & purification</subject><subject>Base Sequence</subject><subject>Colony Count, Microbial</subject><subject>Crenarchaeota</subject><subject>Crenarchaeota - classification</subject><subject>Crenarchaeota - genetics</subject><subject>Crenarchaeota - growth & development</subject><subject>DNA, Archaeal - genetics</subject><subject>DNA, Archaeal - isolation & purification</subject><subject>DNA, Ribosomal - chemistry</subject><subject>DNA, Ribosomal - genetics</subject><subject>Environment</subject><subject>Euryarchaeota</subject><subject>Euryarchaeota - classification</subject><subject>Euryarchaeota - genetics</subject><subject>Euryarchaeota - growth & development</subject><subject>Fresh Water - microbiology</subject><subject>Japan</subject><subject>Molecular Sequence Data</subject><subject>Phylogeny</subject><subject>Population Dynamics</subject><subject>Rivers - microbiology</subject><subject>RNA, Ribosomal, 16S - genetics</subject><subject>Seawater - microbiology</subject><subject>Sequence Analysis, DNA</subject><subject>Shimizu Port</subject><subject>Suruga Bay</subject><subject>Tomoe River Mouth</subject><issn>1342-6311</issn><issn>1347-4405</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2010</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNpFkEtLAzEURoMotj6WbiXgejTvdJZS6wNaFFFchszMHU1pMzXJiP33ju1YN_e7JCdf4CB0RsklZUpczeMS2OVsQgklag8NKRc6E4LI_c3OMsUpHaCjGOeEcC41O0QDRqVWI8WHCJ6aVbuwyTUe36y9Xboy4qbG4wDehvLDQpMstr7Ckzas_0-cx-kD8Mx9O_-Ob0Pj0--zZ_cFYYPPbHAe8JtNEOIJOqjtIsJpn8fo9XbyMr7Ppo93D-PraVYqJlImLM21qqq8IGVuKeQVIYQWJe-isLzQiklCheRAi4LwuhK5lrQuQNWllMzyY3Sx7V2F5rOFmMy8aYPvvjRUKK2F4CPdUdmWKkMTY4DarIJb2rA2lJhfqWYj1fRSO_68b22LJVQ7-s9iB4y3wDwm-w47wIbkygX0dUyazehrd7ed0mDA8x_wsIrK</recordid><startdate>2010</startdate><enddate>2010</enddate><creator>Hao, Do Manh</creator><creator>Tashiro, Tomokazu</creator><creator>Kato, Miharu</creator><creator>Sohrin, Rumi</creator><creator>Ishibashi, Tomotaka</creator><creator>Katsuyama, Chie</creator><creator>Nagaosa, Kazuyo</creator><creator>Kimura, Hiroyuki</creator><creator>Thanh, Tran Duc</creator><creator>Kato, Kenji</creator><general>Japanese Society of Microbial Ecology / Japanese Society of Soil Microbiology / Taiwan Society of Microbial Ecology / Japanese Society of Plant Microbe Interactions / Japanese Society for Extremophiles</general><general>Japan Science and Technology Agency</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7QL</scope><scope>C1K</scope><scope>F1W</scope><scope>H95</scope><scope>L.G</scope><scope>M7N</scope></search><sort><creationdate>2010</creationdate><title>Population Dynamics of Crenarchaeota and Euryarchaeota in the Mixing Front of River and Marine Waters</title><author>Hao, Do Manh ; 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| source | MEDLINE; J-STAGE (Japan Science & Technology Information Aggregator, Electronic) Freely Available Titles - Japanese; EZB-FREE-00999 freely available EZB journals |
| subjects | Bacteria - growth & development Bacteria - isolation & purification Base Sequence Colony Count, Microbial Crenarchaeota Crenarchaeota - classification Crenarchaeota - genetics Crenarchaeota - growth & development DNA, Archaeal - genetics DNA, Archaeal - isolation & purification DNA, Ribosomal - chemistry DNA, Ribosomal - genetics Environment Euryarchaeota Euryarchaeota - classification Euryarchaeota - genetics Euryarchaeota - growth & development Fresh Water - microbiology Japan Molecular Sequence Data Phylogeny Population Dynamics Rivers - microbiology RNA, Ribosomal, 16S - genetics Seawater - microbiology Sequence Analysis, DNA Shimizu Port Suruga Bay Tomoe River Mouth |
| title | Population Dynamics of Crenarchaeota and Euryarchaeota in the Mixing Front of River and Marine Waters |
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