QTL analysis of black rot resistance in cabbage using newly developed EST-SNP markers
One hundred sixty-one EST-SNP markers were newly developed for analysis of QTLs for resistance to black rot caused by Xanthomonas campestris pv. campestris by determining EST sequences of a resistant line obtained from cabbage ‘Early Fuji’ and a susceptible broccoli line. A linkage map consisting of...
Gespeichert in:
| Veröffentlicht in: | Euphytica 2013-04, Vol.190 (2), p.289-295 |
|---|---|
| Hauptverfasser: | , , , , |
| Format: | Artikel |
| Sprache: | eng |
| Schlagworte: | |
| Online-Zugang: | Volltext |
| Tags: |
Tag hinzufügen
Keine Tags, Fügen Sie den ersten Tag hinzu!
|
| container_end_page | 295 |
|---|---|
| container_issue | 2 |
| container_start_page | 289 |
| container_title | Euphytica |
| container_volume | 190 |
| creator | Kifuji, Yasuko Hanzawa, Hideaki Terasawa, Yuuichi Ashutosh Nishio, Takeshi |
| description | One hundred sixty-one EST-SNP markers were newly developed for analysis of QTLs for resistance to black rot caused by
Xanthomonas campestris
pv.
campestris
by determining EST sequences of a resistant line obtained from cabbage ‘Early Fuji’ and a susceptible broccoli line. A linkage map consisting of nine linkage groups was constructed with a total of 209 markers, including these new SNP markers and previously reported DNA markers. F
2
plants grown in a field for 1 month were inoculated by spraying bacteria of race 1, and disease severity of each plant was recorded. Three QTLs, i.e., QTL-1, QTL-2, and QTL-3, were detected on linkage group C2, C4 and C5, respectively. QTL-1, which showed the highest LOD score and additive effect, was again detected in another F
2
population used the next year, suggesting QTL-1 to be a major QTL. QTL-2 and QTL-3 could be minor QTLs influenced by environmental factors. The genomic region harboring QTL-1 showed synteny with a region from 5.3 to 7.4 Mb from the short arm end of chromosome 5 of
Arabidopsis thaliana
, which is rich in TIR-NBS-LRR family genes. The identified SNP markers in QTL-1 are considered to be useful in marker-assisted selection for black rot resistance in
Brassica oleracea
lines. |
| doi_str_mv | 10.1007/s10681-012-0847-1 |
| format | Article |
| fullrecord | <record><control><sourceid>gale_proqu</sourceid><recordid>TN_cdi_proquest_journals_1315220571</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><galeid>A714077991</galeid><sourcerecordid>A714077991</sourcerecordid><originalsourceid>FETCH-LOGICAL-c523t-479000edc8826d201fb53a45ba9b80430e530741fcf5912ff5b1a973f4290fa33</originalsourceid><addsrcrecordid>eNp1kU1rGzEQhkVJoW7aH9CboPSoZEYf1uoYQtoETNoS5yy0WskoWe860jrF_z4yDm0CDXMYmHneYWZeQr4gnCCAPi0I8wYZIGfQSM3wHZmh0oIpmMMRmQGgZFyI-QfysZQ7ADBawYzc_l4uqBtcvyup0DHStnf-nuZxojnU0uQGH2gaqHdt61aBbksaVnQIf_od7cJj6MdN6OjFzZLdXP-ia5fvQy6fyPvo-hI-P-djcvv9Ynl-yRY_f1ydny2YV1xMTGpTFwmdbxo-7zhgbJVwUrXOtA1IAUEJ0BKjj8ogj1G16IwWUXID0QlxTL4e5m7y-LANZbJ34zbXa4pFgYpzUBr_USvXB5uGOE7Z-XUq3p5plKC1MXvq5D9UjS6skx-HEFOtvxLgQeDzWEoO0W5yqg_YWQS7N8UeTLHVFLs3xe41354XdsW7Pub63lT-CrlWRskGKscPXKmtYRXyi8PeHP4EPA6YWA</addsrcrecordid><sourcetype>Aggregation Database</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype><pqid>1315220571</pqid></control><display><type>article</type><title>QTL analysis of black rot resistance in cabbage using newly developed EST-SNP markers</title><source>SpringerLink Journals - AutoHoldings</source><creator>Kifuji, Yasuko ; Hanzawa, Hideaki ; Terasawa, Yuuichi ; Ashutosh ; Nishio, Takeshi</creator><creatorcontrib>Kifuji, Yasuko ; Hanzawa, Hideaki ; Terasawa, Yuuichi ; Ashutosh ; Nishio, Takeshi</creatorcontrib><description>One hundred sixty-one EST-SNP markers were newly developed for analysis of QTLs for resistance to black rot caused by
Xanthomonas campestris
pv.
campestris
by determining EST sequences of a resistant line obtained from cabbage ‘Early Fuji’ and a susceptible broccoli line. A linkage map consisting of nine linkage groups was constructed with a total of 209 markers, including these new SNP markers and previously reported DNA markers. F
2
plants grown in a field for 1 month were inoculated by spraying bacteria of race 1, and disease severity of each plant was recorded. Three QTLs, i.e., QTL-1, QTL-2, and QTL-3, were detected on linkage group C2, C4 and C5, respectively. QTL-1, which showed the highest LOD score and additive effect, was again detected in another F
2
population used the next year, suggesting QTL-1 to be a major QTL. QTL-2 and QTL-3 could be minor QTLs influenced by environmental factors. The genomic region harboring QTL-1 showed synteny with a region from 5.3 to 7.4 Mb from the short arm end of chromosome 5 of
Arabidopsis thaliana
, which is rich in TIR-NBS-LRR family genes. The identified SNP markers in QTL-1 are considered to be useful in marker-assisted selection for black rot resistance in
Brassica oleracea
lines.</description><identifier>ISSN: 0014-2336</identifier><identifier>EISSN: 1573-5060</identifier><identifier>DOI: 10.1007/s10681-012-0847-1</identifier><identifier>CODEN: EUPHAA</identifier><language>eng</language><publisher>Dordrecht: Springer Netherlands</publisher><subject>Agronomy. Soil science and plant productions ; Analysis ; Arabidopsis thaliana ; Biological and medical sciences ; Biomedical and Life Sciences ; Biotechnology ; Crop diseases ; Environmental factors ; Fundamental and applied biological sciences. Psychology ; Genetic markers ; Genetics and breeding of economic plants ; Genomics ; Life Sciences ; Plant Genetics and Genomics ; Plant Pathology ; Plant Physiology ; Plant resistance ; Plant Sciences ; Quantitative genetics ; Single nucleotide polymorphisms ; Varietal selection. Specialized plant breeding, plant breeding aims</subject><ispartof>Euphytica, 2013-04, Vol.190 (2), p.289-295</ispartof><rights>Springer Science+Business Media Dordrecht 2012</rights><rights>2014 INIST-CNRS</rights><rights>COPYRIGHT 2013 Springer</rights><rights>Springer Science+Business Media Dordrecht 2013</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c523t-479000edc8826d201fb53a45ba9b80430e530741fcf5912ff5b1a973f4290fa33</citedby><cites>FETCH-LOGICAL-c523t-479000edc8826d201fb53a45ba9b80430e530741fcf5912ff5b1a973f4290fa33</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://link.springer.com/content/pdf/10.1007/s10681-012-0847-1$$EPDF$$P50$$Gspringer$$H</linktopdf><linktohtml>$$Uhttps://link.springer.com/10.1007/s10681-012-0847-1$$EHTML$$P50$$Gspringer$$H</linktohtml><link.rule.ids>314,780,784,27924,27925,41488,42557,51319</link.rule.ids><backlink>$$Uhttp://pascal-francis.inist.fr/vibad/index.php?action=getRecordDetail&idt=27595480$$DView record in Pascal Francis$$Hfree_for_read</backlink></links><search><creatorcontrib>Kifuji, Yasuko</creatorcontrib><creatorcontrib>Hanzawa, Hideaki</creatorcontrib><creatorcontrib>Terasawa, Yuuichi</creatorcontrib><creatorcontrib>Ashutosh</creatorcontrib><creatorcontrib>Nishio, Takeshi</creatorcontrib><title>QTL analysis of black rot resistance in cabbage using newly developed EST-SNP markers</title><title>Euphytica</title><addtitle>Euphytica</addtitle><description>One hundred sixty-one EST-SNP markers were newly developed for analysis of QTLs for resistance to black rot caused by
Xanthomonas campestris
pv.
campestris
by determining EST sequences of a resistant line obtained from cabbage ‘Early Fuji’ and a susceptible broccoli line. A linkage map consisting of nine linkage groups was constructed with a total of 209 markers, including these new SNP markers and previously reported DNA markers. F
2
plants grown in a field for 1 month were inoculated by spraying bacteria of race 1, and disease severity of each plant was recorded. Three QTLs, i.e., QTL-1, QTL-2, and QTL-3, were detected on linkage group C2, C4 and C5, respectively. QTL-1, which showed the highest LOD score and additive effect, was again detected in another F
2
population used the next year, suggesting QTL-1 to be a major QTL. QTL-2 and QTL-3 could be minor QTLs influenced by environmental factors. The genomic region harboring QTL-1 showed synteny with a region from 5.3 to 7.4 Mb from the short arm end of chromosome 5 of
Arabidopsis thaliana
, which is rich in TIR-NBS-LRR family genes. The identified SNP markers in QTL-1 are considered to be useful in marker-assisted selection for black rot resistance in
Brassica oleracea
lines.</description><subject>Agronomy. Soil science and plant productions</subject><subject>Analysis</subject><subject>Arabidopsis thaliana</subject><subject>Biological and medical sciences</subject><subject>Biomedical and Life Sciences</subject><subject>Biotechnology</subject><subject>Crop diseases</subject><subject>Environmental factors</subject><subject>Fundamental and applied biological sciences. Psychology</subject><subject>Genetic markers</subject><subject>Genetics and breeding of economic plants</subject><subject>Genomics</subject><subject>Life Sciences</subject><subject>Plant Genetics and Genomics</subject><subject>Plant Pathology</subject><subject>Plant Physiology</subject><subject>Plant resistance</subject><subject>Plant Sciences</subject><subject>Quantitative genetics</subject><subject>Single nucleotide polymorphisms</subject><subject>Varietal selection. Specialized plant breeding, plant breeding aims</subject><issn>0014-2336</issn><issn>1573-5060</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2013</creationdate><recordtype>article</recordtype><sourceid>ABUWG</sourceid><sourceid>AFKRA</sourceid><sourceid>AZQEC</sourceid><sourceid>BENPR</sourceid><sourceid>CCPQU</sourceid><sourceid>DWQXO</sourceid><sourceid>GNUQQ</sourceid><recordid>eNp1kU1rGzEQhkVJoW7aH9CboPSoZEYf1uoYQtoETNoS5yy0WskoWe860jrF_z4yDm0CDXMYmHneYWZeQr4gnCCAPi0I8wYZIGfQSM3wHZmh0oIpmMMRmQGgZFyI-QfysZQ7ADBawYzc_l4uqBtcvyup0DHStnf-nuZxojnU0uQGH2gaqHdt61aBbksaVnQIf_od7cJj6MdN6OjFzZLdXP-ia5fvQy6fyPvo-hI-P-djcvv9Ynl-yRY_f1ydny2YV1xMTGpTFwmdbxo-7zhgbJVwUrXOtA1IAUEJ0BKjj8ogj1G16IwWUXID0QlxTL4e5m7y-LANZbJ34zbXa4pFgYpzUBr_USvXB5uGOE7Z-XUq3p5plKC1MXvq5D9UjS6skx-HEFOtvxLgQeDzWEoO0W5yqg_YWQS7N8UeTLHVFLs3xe41354XdsW7Pub63lT-CrlWRskGKscPXKmtYRXyi8PeHP4EPA6YWA</recordid><startdate>20130401</startdate><enddate>20130401</enddate><creator>Kifuji, Yasuko</creator><creator>Hanzawa, Hideaki</creator><creator>Terasawa, Yuuichi</creator><creator>Ashutosh</creator><creator>Nishio, Takeshi</creator><general>Springer Netherlands</general><general>Springer</general><general>Springer Nature B.V</general><scope>IQODW</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7SN</scope><scope>7SS</scope><scope>7T7</scope><scope>7TM</scope><scope>7X2</scope><scope>7XB</scope><scope>88I</scope><scope>8FD</scope><scope>8FE</scope><scope>8FH</scope><scope>8FK</scope><scope>ABUWG</scope><scope>AFKRA</scope><scope>ATCPS</scope><scope>AZQEC</scope><scope>BENPR</scope><scope>BHPHI</scope><scope>C1K</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FR3</scope><scope>GNUQQ</scope><scope>HCIFZ</scope><scope>M0K</scope><scope>M2P</scope><scope>M7N</scope><scope>P64</scope><scope>PATMY</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>PYCSY</scope><scope>Q9U</scope><scope>RC3</scope></search><sort><creationdate>20130401</creationdate><title>QTL analysis of black rot resistance in cabbage using newly developed EST-SNP markers</title><author>Kifuji, Yasuko ; Hanzawa, Hideaki ; Terasawa, Yuuichi ; Ashutosh ; Nishio, Takeshi</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c523t-479000edc8826d201fb53a45ba9b80430e530741fcf5912ff5b1a973f4290fa33</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2013</creationdate><topic>Agronomy. Soil science and plant productions</topic><topic>Analysis</topic><topic>Arabidopsis thaliana</topic><topic>Biological and medical sciences</topic><topic>Biomedical and Life Sciences</topic><topic>Biotechnology</topic><topic>Crop diseases</topic><topic>Environmental factors</topic><topic>Fundamental and applied biological sciences. Psychology</topic><topic>Genetic markers</topic><topic>Genetics and breeding of economic plants</topic><topic>Genomics</topic><topic>Life Sciences</topic><topic>Plant Genetics and Genomics</topic><topic>Plant Pathology</topic><topic>Plant Physiology</topic><topic>Plant resistance</topic><topic>Plant Sciences</topic><topic>Quantitative genetics</topic><topic>Single nucleotide polymorphisms</topic><topic>Varietal selection. Specialized plant breeding, plant breeding aims</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Kifuji, Yasuko</creatorcontrib><creatorcontrib>Hanzawa, Hideaki</creatorcontrib><creatorcontrib>Terasawa, Yuuichi</creatorcontrib><creatorcontrib>Ashutosh</creatorcontrib><creatorcontrib>Nishio, Takeshi</creatorcontrib><collection>Pascal-Francis</collection><collection>CrossRef</collection><collection>ProQuest Central (Corporate)</collection><collection>Ecology Abstracts</collection><collection>Entomology Abstracts (Full archive)</collection><collection>Industrial and Applied Microbiology Abstracts (Microbiology A)</collection><collection>Nucleic Acids Abstracts</collection><collection>Agricultural Science Collection</collection><collection>ProQuest Central (purchase pre-March 2016)</collection><collection>Science Database (Alumni Edition)</collection><collection>Technology Research Database</collection><collection>ProQuest SciTech Collection</collection><collection>ProQuest Natural Science Collection</collection><collection>ProQuest Central (Alumni) (purchase pre-March 2016)</collection><collection>ProQuest Central (Alumni Edition)</collection><collection>ProQuest Central UK/Ireland</collection><collection>Agricultural & Environmental Science Collection</collection><collection>ProQuest Central Essentials</collection><collection>ProQuest Central</collection><collection>Natural Science Collection</collection><collection>Environmental Sciences and Pollution Management</collection><collection>ProQuest One Community College</collection><collection>ProQuest Central Korea</collection><collection>Engineering Research Database</collection><collection>ProQuest Central Student</collection><collection>SciTech Premium Collection</collection><collection>Agricultural Science Database</collection><collection>Science Database</collection><collection>Algology Mycology and Protozoology Abstracts (Microbiology C)</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Environmental Science Database</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>Environmental Science Collection</collection><collection>ProQuest Central Basic</collection><collection>Genetics Abstracts</collection><jtitle>Euphytica</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Kifuji, Yasuko</au><au>Hanzawa, Hideaki</au><au>Terasawa, Yuuichi</au><au>Ashutosh</au><au>Nishio, Takeshi</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>QTL analysis of black rot resistance in cabbage using newly developed EST-SNP markers</atitle><jtitle>Euphytica</jtitle><stitle>Euphytica</stitle><date>2013-04-01</date><risdate>2013</risdate><volume>190</volume><issue>2</issue><spage>289</spage><epage>295</epage><pages>289-295</pages><issn>0014-2336</issn><eissn>1573-5060</eissn><coden>EUPHAA</coden><abstract>One hundred sixty-one EST-SNP markers were newly developed for analysis of QTLs for resistance to black rot caused by
Xanthomonas campestris
pv.
campestris
by determining EST sequences of a resistant line obtained from cabbage ‘Early Fuji’ and a susceptible broccoli line. A linkage map consisting of nine linkage groups was constructed with a total of 209 markers, including these new SNP markers and previously reported DNA markers. F
2
plants grown in a field for 1 month were inoculated by spraying bacteria of race 1, and disease severity of each plant was recorded. Three QTLs, i.e., QTL-1, QTL-2, and QTL-3, were detected on linkage group C2, C4 and C5, respectively. QTL-1, which showed the highest LOD score and additive effect, was again detected in another F
2
population used the next year, suggesting QTL-1 to be a major QTL. QTL-2 and QTL-3 could be minor QTLs influenced by environmental factors. The genomic region harboring QTL-1 showed synteny with a region from 5.3 to 7.4 Mb from the short arm end of chromosome 5 of
Arabidopsis thaliana
, which is rich in TIR-NBS-LRR family genes. The identified SNP markers in QTL-1 are considered to be useful in marker-assisted selection for black rot resistance in
Brassica oleracea
lines.</abstract><cop>Dordrecht</cop><pub>Springer Netherlands</pub><doi>10.1007/s10681-012-0847-1</doi><tpages>7</tpages><oa>free_for_read</oa></addata></record> |
| fulltext | fulltext |
| identifier | ISSN: 0014-2336 |
| ispartof | Euphytica, 2013-04, Vol.190 (2), p.289-295 |
| issn | 0014-2336 1573-5060 |
| language | eng |
| recordid | cdi_proquest_journals_1315220571 |
| source | SpringerLink Journals - AutoHoldings |
| subjects | Agronomy. Soil science and plant productions Analysis Arabidopsis thaliana Biological and medical sciences Biomedical and Life Sciences Biotechnology Crop diseases Environmental factors Fundamental and applied biological sciences. Psychology Genetic markers Genetics and breeding of economic plants Genomics Life Sciences Plant Genetics and Genomics Plant Pathology Plant Physiology Plant resistance Plant Sciences Quantitative genetics Single nucleotide polymorphisms Varietal selection. Specialized plant breeding, plant breeding aims |
| title | QTL analysis of black rot resistance in cabbage using newly developed EST-SNP markers |
| url | https://sfx.bib-bvb.de/sfx_tum?ctx_ver=Z39.88-2004&ctx_enc=info:ofi/enc:UTF-8&ctx_tim=2025-01-05T13%3A53%3A44IST&url_ver=Z39.88-2004&url_ctx_fmt=infofi/fmt:kev:mtx:ctx&rfr_id=info:sid/primo.exlibrisgroup.com:primo3-Article-gale_proqu&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.genre=article&rft.atitle=QTL%20analysis%20of%20black%20rot%20resistance%20in%20cabbage%20using%20newly%20developed%20EST-SNP%20markers&rft.jtitle=Euphytica&rft.au=Kifuji,%20Yasuko&rft.date=2013-04-01&rft.volume=190&rft.issue=2&rft.spage=289&rft.epage=295&rft.pages=289-295&rft.issn=0014-2336&rft.eissn=1573-5060&rft.coden=EUPHAA&rft_id=info:doi/10.1007/s10681-012-0847-1&rft_dat=%3Cgale_proqu%3EA714077991%3C/gale_proqu%3E%3Curl%3E%3C/url%3E&disable_directlink=true&sfx.directlink=off&sfx.report_link=0&rft_id=info:oai/&rft_pqid=1315220571&rft_id=info:pmid/&rft_galeid=A714077991&rfr_iscdi=true |