Total cellular glycomics allows characterizing cells and streamlining the discovery process for cellular biomarkers

Although many of the frequently used pluripotency biomarkers are glycoconjugates, a glycoconjugate-based exploration of novel cellular biomarkers has proven difficult due to technical difficulties. This study reports a unique approach for the systematic overview of all major classes of oligosacchari...

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Veröffentlicht in:Proceedings of the National Academy of Sciences - PNAS 2013-02, Vol.110 (6), p.2105-2110
Hauptverfasser: Fujitani, Naoki, Furukawa, Jun-ichi, Araki, Kayo, Fujioka, Tsuyoshi, Takegawa, Yasuhiro, Piao, Jinhua, Nishioka, Taiki, Tamura, Tomohiro, Nikaido, Toshio, Ito, Makoto, Nakamura, Yukio, Shinohara, Yasuro
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container_title Proceedings of the National Academy of Sciences - PNAS
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creator Fujitani, Naoki
Furukawa, Jun-ichi
Araki, Kayo
Fujioka, Tsuyoshi
Takegawa, Yasuhiro
Piao, Jinhua
Nishioka, Taiki
Tamura, Tomohiro
Nikaido, Toshio
Ito, Makoto
Nakamura, Yukio
Shinohara, Yasuro
description Although many of the frequently used pluripotency biomarkers are glycoconjugates, a glycoconjugate-based exploration of novel cellular biomarkers has proven difficult due to technical difficulties. This study reports a unique approach for the systematic overview of all major classes of oligosaccharides in the cellular glycome. The proposed method enabled mass spectrometry–based structurally intensive analyses, both qualitatively and quantitatively, of cellular N - and O -linked glycans derived from glycoproteins, glycosaminoglycans, and glycosphingolipids, as well as free oligosaccharides of human embryonic stem cells (hESCs), induced pluripotent stem cells (hiPSCs), and various human cells derived from normal and carcinoma cells. Cellular total glycomes were found to be highly cell specific, demonstrating their utility as unique cellular descriptors. Structures of glycans of all classes specifically observed in hESCs and hiPSCs tended to be immature in general, suggesting the presence of stem cell–specific glycosylation spectra. The current analysis revealed the high similarity of the total cellular glycome between hESCs and hiPSCs, although it was suggested that hESCs are more homogeneous than hiPSCs from a glycomic standpoint. Notably, this study enabled a priori identification of known pluripotency biomarkers such as SSEA-3, -4, and -5 and Tra-1–60/81, as well as a panel of glycans specifically expressed by hESCs and hiPSCs.
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subjects Animals
Biological markers
Biological Sciences
Biomarkers
Biomarkers - chemistry
Biomarkers - metabolism
Caco 2 cells
Carbohydrate Metabolism
Cell Line
Cell Line, Tumor
Cell lines
Chromatography, High Pressure Liquid
Cricetinae
Embryonic stem cells
Embryonic Stem Cells - metabolism
Glycomics - methods
glycoproteins
glycosaminoglycans
glycosphingolipids
Glycosylation
HEK293 cells
Hepatocytes
Humans
induced pluripotent stem cells
Induced Pluripotent Stem Cells - metabolism
Kidney cells
Lipids
Mass spectrometry
Metabolome
Molecular Structure
neoplasm cells
oligosaccharides
Oligosaccharides - chemistry
Oligosaccharides - metabolism
Pluripotent stem cells
Polysaccharides
Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization
Stem cells
title Total cellular glycomics allows characterizing cells and streamlining the discovery process for cellular biomarkers
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