Alteration of the oxygen-dependent reactivity of de novo Due Ferri proteins
De novo proteins provide a unique opportunity to investigate the structure–function relationships of metalloproteins in a minimal, well-defined and controlled scaffold. Here, we describe the rational programming of function in a de novo designed di-iron carboxylate protein from the Due Ferri family....
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Veröffentlicht in: | Nature chemistry 2012-11, Vol.4 (11), p.900-906 |
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creator | Reig, Amanda J. Pires, Marcos M. Snyder, Rae Ana Wu, Yibing Jo, Hyunil Kulp, Daniel W. Butch, Susan E. Calhoun, Jennifer R. Szyperski, Thomas Solomon, Edward I. DeGrado, William F. |
description | De novo
proteins provide a unique opportunity to investigate the structure–function relationships of metalloproteins in a minimal, well-defined and controlled scaffold. Here, we describe the rational programming of function in a
de novo
designed di-iron carboxylate protein from the Due Ferri family. Originally created to catalyse the O
2
-dependent, two-electron oxidation of hydroquinones, the protein was reprogrammed to catalyse the selective
N
-hydroxylation of arylamines by remodelling the substrate access cavity and introducing a critical third His ligand to the metal-binding cavity. Additional second- and third-shell modifications were required to stabilize the His ligand in the core of the protein. These structural changes resulted in at least a 10
6
-fold increase in the relative rate between the arylamine
N
-hydroxylation and hydroquinone oxidation reactions. This result highlights the potential for using
de novo
proteins as scaffolds for future investigations of the geometric and electronic factors that influence the catalytic tuning of di-iron active sites.
Representing the first successful rational reprogramming of function in a
de novo
protein, the reactivity of a designed di-iron carboxylate protein from the Due Ferri family was altered from hydroquinone oxidation to arylamine
N
-hydroxylation through the introduction of a critical third histidine ligand in the active site. |
doi_str_mv | 10.1038/nchem.1454 |
format | Article |
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proteins provide a unique opportunity to investigate the structure–function relationships of metalloproteins in a minimal, well-defined and controlled scaffold. Here, we describe the rational programming of function in a
de novo
designed di-iron carboxylate protein from the Due Ferri family. Originally created to catalyse the O
2
-dependent, two-electron oxidation of hydroquinones, the protein was reprogrammed to catalyse the selective
N
-hydroxylation of arylamines by remodelling the substrate access cavity and introducing a critical third His ligand to the metal-binding cavity. Additional second- and third-shell modifications were required to stabilize the His ligand in the core of the protein. These structural changes resulted in at least a 10
6
-fold increase in the relative rate between the arylamine
N
-hydroxylation and hydroquinone oxidation reactions. This result highlights the potential for using
de novo
proteins as scaffolds for future investigations of the geometric and electronic factors that influence the catalytic tuning of di-iron active sites.
Representing the first successful rational reprogramming of function in a
de novo
protein, the reactivity of a designed di-iron carboxylate protein from the Due Ferri family was altered from hydroquinone oxidation to arylamine
N
-hydroxylation through the introduction of a critical third histidine ligand in the active site.</description><identifier>ISSN: 1755-4330</identifier><identifier>EISSN: 1755-4349</identifier><identifier>DOI: 10.1038/nchem.1454</identifier><identifier>PMID: 23089864</identifier><language>eng</language><publisher>London: Nature Publishing Group UK</publisher><subject>639/638/263 ; 639/638/45/535 ; 639/638/92/469 ; Amino Acid Sequence ; Amino acids ; Analytical Chemistry ; Biochemistry ; Ceruloplasmin - metabolism ; Chemistry ; Chemistry/Food Science ; Drug Design ; Electrons ; Enzymes ; Hydroquinones - chemistry ; Hydroquinones - metabolism ; Hydroxylation ; Inorganic Chemistry ; Iron ; Iron-Binding Proteins - chemistry ; Iron-Binding Proteins - metabolism ; Kinetics ; Ligands ; Models, Molecular ; Molecular Sequence Data ; Mutation ; Organic Chemistry ; Oxidation ; Oxygen - metabolism ; Physical Chemistry ; Protein Folding ; Protein Stability ; Protein Structure, Secondary ; Proteins</subject><ispartof>Nature chemistry, 2012-11, Vol.4 (11), p.900-906</ispartof><rights>Springer Nature Limited 2012</rights><rights>Copyright Nature Publishing Group Nov 2012</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c387t-767976aaec7f69eded0ff1fd1ca5b8d10dd04145c8957e91217465b7e49562ef3</citedby><cites>FETCH-LOGICAL-c387t-767976aaec7f69eded0ff1fd1ca5b8d10dd04145c8957e91217465b7e49562ef3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://link.springer.com/content/pdf/10.1038/nchem.1454$$EPDF$$P50$$Gspringer$$H</linktopdf><linktohtml>$$Uhttps://link.springer.com/10.1038/nchem.1454$$EHTML$$P50$$Gspringer$$H</linktohtml><link.rule.ids>314,776,780,27901,27902,41464,42533,51294</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/23089864$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Reig, Amanda J.</creatorcontrib><creatorcontrib>Pires, Marcos M.</creatorcontrib><creatorcontrib>Snyder, Rae Ana</creatorcontrib><creatorcontrib>Wu, Yibing</creatorcontrib><creatorcontrib>Jo, Hyunil</creatorcontrib><creatorcontrib>Kulp, Daniel W.</creatorcontrib><creatorcontrib>Butch, Susan E.</creatorcontrib><creatorcontrib>Calhoun, Jennifer R.</creatorcontrib><creatorcontrib>Szyperski, Thomas</creatorcontrib><creatorcontrib>Solomon, Edward I.</creatorcontrib><creatorcontrib>DeGrado, William F.</creatorcontrib><title>Alteration of the oxygen-dependent reactivity of de novo Due Ferri proteins</title><title>Nature chemistry</title><addtitle>Nature Chem</addtitle><addtitle>Nat Chem</addtitle><description>De novo
proteins provide a unique opportunity to investigate the structure–function relationships of metalloproteins in a minimal, well-defined and controlled scaffold. Here, we describe the rational programming of function in a
de novo
designed di-iron carboxylate protein from the Due Ferri family. Originally created to catalyse the O
2
-dependent, two-electron oxidation of hydroquinones, the protein was reprogrammed to catalyse the selective
N
-hydroxylation of arylamines by remodelling the substrate access cavity and introducing a critical third His ligand to the metal-binding cavity. Additional second- and third-shell modifications were required to stabilize the His ligand in the core of the protein. These structural changes resulted in at least a 10
6
-fold increase in the relative rate between the arylamine
N
-hydroxylation and hydroquinone oxidation reactions. This result highlights the potential for using
de novo
proteins as scaffolds for future investigations of the geometric and electronic factors that influence the catalytic tuning of di-iron active sites.
Representing the first successful rational reprogramming of function in a
de novo
protein, the reactivity of a designed di-iron carboxylate protein from the Due Ferri family was altered from hydroquinone oxidation to arylamine
N
-hydroxylation through the introduction of a critical third histidine ligand in the active site.</description><subject>639/638/263</subject><subject>639/638/45/535</subject><subject>639/638/92/469</subject><subject>Amino Acid Sequence</subject><subject>Amino acids</subject><subject>Analytical Chemistry</subject><subject>Biochemistry</subject><subject>Ceruloplasmin - metabolism</subject><subject>Chemistry</subject><subject>Chemistry/Food Science</subject><subject>Drug Design</subject><subject>Electrons</subject><subject>Enzymes</subject><subject>Hydroquinones - chemistry</subject><subject>Hydroquinones - metabolism</subject><subject>Hydroxylation</subject><subject>Inorganic Chemistry</subject><subject>Iron</subject><subject>Iron-Binding Proteins - chemistry</subject><subject>Iron-Binding Proteins - metabolism</subject><subject>Kinetics</subject><subject>Ligands</subject><subject>Models, Molecular</subject><subject>Molecular Sequence Data</subject><subject>Mutation</subject><subject>Organic Chemistry</subject><subject>Oxidation</subject><subject>Oxygen - metabolism</subject><subject>Physical Chemistry</subject><subject>Protein Folding</subject><subject>Protein Stability</subject><subject>Protein Structure, Secondary</subject><subject>Proteins</subject><issn>1755-4330</issn><issn>1755-4349</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2012</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><sourceid>BENPR</sourceid><recordid>eNplkE1PAjEQhhujEUQv_gDTxJtmsbPbj90jQVEjiRc9b5btFJZAi20h8u9dBI2Jp5lknrxv5iHkElgfWJbf2XqGyz5wwY9IF5QQCc94cfy7Z6xDzkKYMyZFBvKUdNKM5UUueZe8DBYRfRUbZ6kzNM6Qus_tFG2icYVWo43UY1XHZtPE7Q7RSK3bOHq_RjpC7xu68i5iY8M5OTHVIuDFYfbI--jhbfiUjF8fn4eDcVJnuYqJkqpQsqqwVkYWqFEzY8BoqCsxyTUwrRlvv6nzQigsIAXFpZgo5IWQKZqsR673uW3xxxpDLOdu7W1bWQKAYKlQkLbUzZ6qvQvBoylXvllWflsCK3feym9v5c5bC18dIteTJepf9EdUC9zugdCe7BT9n87_cV864HfB</recordid><startdate>20121101</startdate><enddate>20121101</enddate><creator>Reig, Amanda J.</creator><creator>Pires, Marcos M.</creator><creator>Snyder, Rae Ana</creator><creator>Wu, Yibing</creator><creator>Jo, Hyunil</creator><creator>Kulp, Daniel W.</creator><creator>Butch, Susan E.</creator><creator>Calhoun, Jennifer R.</creator><creator>Szyperski, Thomas</creator><creator>Solomon, Edward I.</creator><creator>DeGrado, William F.</creator><general>Nature Publishing Group UK</general><general>Nature Publishing Group</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7QR</scope><scope>7X7</scope><scope>7XB</scope><scope>88E</scope><scope>8AO</scope><scope>8FD</scope><scope>8FE</scope><scope>8FG</scope><scope>8FH</scope><scope>8FI</scope><scope>8FJ</scope><scope>8FK</scope><scope>ABJCF</scope><scope>ABUWG</scope><scope>AEUYN</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BGLVJ</scope><scope>BHPHI</scope><scope>CCPQU</scope><scope>D1I</scope><scope>DWQXO</scope><scope>FR3</scope><scope>FYUFA</scope><scope>GHDGH</scope><scope>GNUQQ</scope><scope>HCIFZ</scope><scope>K9.</scope><scope>KB.</scope><scope>LK8</scope><scope>M0S</scope><scope>M1P</scope><scope>M7P</scope><scope>P64</scope><scope>PDBOC</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope></search><sort><creationdate>20121101</creationdate><title>Alteration of the oxygen-dependent reactivity of de novo Due Ferri proteins</title><author>Reig, Amanda J. ; Pires, Marcos M. ; Snyder, Rae Ana ; Wu, Yibing ; Jo, Hyunil ; Kulp, Daniel W. ; Butch, Susan E. ; Calhoun, Jennifer R. ; Szyperski, Thomas ; Solomon, Edward I. ; DeGrado, William F.</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c387t-767976aaec7f69eded0ff1fd1ca5b8d10dd04145c8957e91217465b7e49562ef3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2012</creationdate><topic>639/638/263</topic><topic>639/638/45/535</topic><topic>639/638/92/469</topic><topic>Amino Acid Sequence</topic><topic>Amino acids</topic><topic>Analytical Chemistry</topic><topic>Biochemistry</topic><topic>Ceruloplasmin - metabolism</topic><topic>Chemistry</topic><topic>Chemistry/Food Science</topic><topic>Drug Design</topic><topic>Electrons</topic><topic>Enzymes</topic><topic>Hydroquinones - chemistry</topic><topic>Hydroquinones - metabolism</topic><topic>Hydroxylation</topic><topic>Inorganic Chemistry</topic><topic>Iron</topic><topic>Iron-Binding Proteins - chemistry</topic><topic>Iron-Binding Proteins - metabolism</topic><topic>Kinetics</topic><topic>Ligands</topic><topic>Models, Molecular</topic><topic>Molecular Sequence Data</topic><topic>Mutation</topic><topic>Organic Chemistry</topic><topic>Oxidation</topic><topic>Oxygen - metabolism</topic><topic>Physical Chemistry</topic><topic>Protein Folding</topic><topic>Protein Stability</topic><topic>Protein Structure, Secondary</topic><topic>Proteins</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Reig, Amanda J.</creatorcontrib><creatorcontrib>Pires, Marcos M.</creatorcontrib><creatorcontrib>Snyder, Rae Ana</creatorcontrib><creatorcontrib>Wu, Yibing</creatorcontrib><creatorcontrib>Jo, Hyunil</creatorcontrib><creatorcontrib>Kulp, Daniel W.</creatorcontrib><creatorcontrib>Butch, Susan E.</creatorcontrib><creatorcontrib>Calhoun, Jennifer R.</creatorcontrib><creatorcontrib>Szyperski, Thomas</creatorcontrib><creatorcontrib>Solomon, Edward I.</creatorcontrib><creatorcontrib>DeGrado, William F.</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>ProQuest Central (Corporate)</collection><collection>Chemoreception Abstracts</collection><collection>Health & Medical Collection</collection><collection>ProQuest Central (purchase pre-March 2016)</collection><collection>Medical Database (Alumni Edition)</collection><collection>ProQuest Pharma Collection</collection><collection>Technology Research Database</collection><collection>ProQuest SciTech Collection</collection><collection>ProQuest Technology Collection</collection><collection>ProQuest Natural Science Collection</collection><collection>Hospital Premium Collection</collection><collection>Hospital Premium Collection (Alumni Edition)</collection><collection>ProQuest Central (Alumni) (purchase pre-March 2016)</collection><collection>Materials Science & Engineering Collection</collection><collection>ProQuest Central (Alumni Edition)</collection><collection>ProQuest One Sustainability</collection><collection>ProQuest Central UK/Ireland</collection><collection>ProQuest Central Essentials</collection><collection>Biological Science Collection</collection><collection>ProQuest Central</collection><collection>Technology Collection</collection><collection>Natural Science Collection</collection><collection>ProQuest One Community College</collection><collection>ProQuest Materials Science Collection</collection><collection>ProQuest Central Korea</collection><collection>Engineering Research Database</collection><collection>Health Research Premium Collection</collection><collection>Health Research Premium Collection (Alumni)</collection><collection>ProQuest Central Student</collection><collection>SciTech Premium Collection</collection><collection>ProQuest Health & Medical Complete (Alumni)</collection><collection>Materials Science Database</collection><collection>ProQuest Biological Science Collection</collection><collection>Health & Medical Collection (Alumni Edition)</collection><collection>Medical Database</collection><collection>Biological Science Database</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Materials Science Collection</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><jtitle>Nature chemistry</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Reig, Amanda J.</au><au>Pires, Marcos M.</au><au>Snyder, Rae Ana</au><au>Wu, Yibing</au><au>Jo, Hyunil</au><au>Kulp, Daniel W.</au><au>Butch, Susan E.</au><au>Calhoun, Jennifer R.</au><au>Szyperski, Thomas</au><au>Solomon, Edward I.</au><au>DeGrado, William F.</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Alteration of the oxygen-dependent reactivity of de novo Due Ferri proteins</atitle><jtitle>Nature chemistry</jtitle><stitle>Nature Chem</stitle><addtitle>Nat Chem</addtitle><date>2012-11-01</date><risdate>2012</risdate><volume>4</volume><issue>11</issue><spage>900</spage><epage>906</epage><pages>900-906</pages><issn>1755-4330</issn><eissn>1755-4349</eissn><abstract>De novo
proteins provide a unique opportunity to investigate the structure–function relationships of metalloproteins in a minimal, well-defined and controlled scaffold. Here, we describe the rational programming of function in a
de novo
designed di-iron carboxylate protein from the Due Ferri family. Originally created to catalyse the O
2
-dependent, two-electron oxidation of hydroquinones, the protein was reprogrammed to catalyse the selective
N
-hydroxylation of arylamines by remodelling the substrate access cavity and introducing a critical third His ligand to the metal-binding cavity. Additional second- and third-shell modifications were required to stabilize the His ligand in the core of the protein. These structural changes resulted in at least a 10
6
-fold increase in the relative rate between the arylamine
N
-hydroxylation and hydroquinone oxidation reactions. This result highlights the potential for using
de novo
proteins as scaffolds for future investigations of the geometric and electronic factors that influence the catalytic tuning of di-iron active sites.
Representing the first successful rational reprogramming of function in a
de novo
protein, the reactivity of a designed di-iron carboxylate protein from the Due Ferri family was altered from hydroquinone oxidation to arylamine
N
-hydroxylation through the introduction of a critical third histidine ligand in the active site.</abstract><cop>London</cop><pub>Nature Publishing Group UK</pub><pmid>23089864</pmid><doi>10.1038/nchem.1454</doi><tpages>7</tpages><oa>free_for_read</oa></addata></record> |
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subjects | 639/638/263 639/638/45/535 639/638/92/469 Amino Acid Sequence Amino acids Analytical Chemistry Biochemistry Ceruloplasmin - metabolism Chemistry Chemistry/Food Science Drug Design Electrons Enzymes Hydroquinones - chemistry Hydroquinones - metabolism Hydroxylation Inorganic Chemistry Iron Iron-Binding Proteins - chemistry Iron-Binding Proteins - metabolism Kinetics Ligands Models, Molecular Molecular Sequence Data Mutation Organic Chemistry Oxidation Oxygen - metabolism Physical Chemistry Protein Folding Protein Stability Protein Structure, Secondary Proteins |
title | Alteration of the oxygen-dependent reactivity of de novo Due Ferri proteins |
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