comparative transcriptomic analysis of the extremely boron tolerant plant Puccinellia distans with the moderately boron tolerant Gypsophila arrostil
The Turkish ecotype of Puccinellia distans displays exceptional boron (B) tolerance, >1,250 mg B L−1, compared to
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| Veröffentlicht in: | Plant cell reports 2012-08, Vol.31 (8), p.1407-1413 |
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| creator | Padmanabhan, Priya Babaoğlu, Mehmet Terry, Norman |
| description | The Turkish ecotype of Puccinellia distans displays exceptional boron (B) tolerance, >1,250 mg B L−1, compared to |
| doi_str_mv | 10.1007/s00299-012-1256-6 |
| format | Article |
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In the present study, we compare the molecular basis for the difference in B tolerance between the two species by constructing high B-responsive suppression subtractive hybridization libraries to identify the upregulated genes. A total of 219 and 113 unique non-redundant expressed sequence tags (ESTs) were identified and functionally classified in P. distans and G. arrostil, respectively. In addition, 63 ESTs were down-regulated in P. distans in response to high B. The majority of the high B upregulated genes belong to four categories: metabolism, protein synthesis, cellular organization, and stress/defense. We hypothesize that the superior B tolerance exhibited by P. distans may be due to its ability to restrict the accumulation of B in plant tissues through the upregulated expression of efflux transporters comparable to the Bot1 transporter of barley. In addition, our results are consistent with the view that other molecular mechanisms involved in stress/defense, such as detoxification, anti-oxidative, and signaling pathways, are needed to tolerate B-toxicity stress. Key message The molecular basis of boron tolerance of two plant species (Puccinellia distans and Gypsophila arrostil) that differ greatly in their boron tolerance was studied in this manuscript.</description><identifier>ISSN: 0721-7714</identifier><identifier>EISSN: 1432-203X</identifier><identifier>DOI: 10.1007/s00299-012-1256-6</identifier><identifier>PMID: 22484861</identifier><identifier>CODEN: PCRPD8</identifier><language>eng</language><publisher>Berlin/Heidelberg: Springer-Verlag</publisher><subject>Adaptation, Physiological - drug effects ; Adaptation, Physiological - genetics ; barley ; Biological and medical sciences ; Biological Transport - drug effects ; Biological Transport - genetics ; Biomedical and Life Sciences ; Biotechnology ; Boron ; Boron - toxicity ; Caryophyllaceae - drug effects ; Caryophyllaceae - genetics ; Caryophyllaceae - metabolism ; Cell Biology ; Detoxification ; Expressed Sequence Tags ; Fundamental and applied biological sciences. Psychology ; Gene Expression Profiling ; gene expression regulation ; Gene Expression Regulation, Plant - drug effects ; genes ; Genes, Plant - genetics ; Gypsophila ; Life Sciences ; Original Paper ; Plant Biochemistry ; Plant Proteins - genetics ; Plant Proteins - metabolism ; Plant Sciences ; Plant species ; Plant tissues ; Poaceae - drug effects ; Poaceae - genetics ; Poaceae - metabolism ; Protein Biosynthesis - drug effects ; Protein Biosynthesis - genetics ; Protein synthesis ; Puccinellia distans ; Reverse Transcriptase Polymerase Chain Reaction ; Signal Transduction - drug effects ; Signal Transduction - genetics ; Stress, Physiological - drug effects ; Stress, Physiological - genetics ; suppression subtractive hybridization ; transcriptomics ; transporters ; Up-Regulation - drug effects ; Up-Regulation - genetics</subject><ispartof>Plant cell reports, 2012-08, Vol.31 (8), p.1407-1413</ispartof><rights>Springer-Verlag 2012</rights><rights>2015 INIST-CNRS</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c426t-983089cd0915ac2e0bbd5949b8b5b7000c5358baabf20ab337ecd3cb68d2a40b3</citedby><cites>FETCH-LOGICAL-c426t-983089cd0915ac2e0bbd5949b8b5b7000c5358baabf20ab337ecd3cb68d2a40b3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://link.springer.com/content/pdf/10.1007/s00299-012-1256-6$$EPDF$$P50$$Gspringer$$H</linktopdf><linktohtml>$$Uhttps://link.springer.com/10.1007/s00299-012-1256-6$$EHTML$$P50$$Gspringer$$H</linktohtml><link.rule.ids>314,777,781,27905,27906,41469,42538,51300</link.rule.ids><backlink>$$Uhttp://pascal-francis.inist.fr/vibad/index.php?action=getRecordDetail&idt=26193041$$DView record in Pascal Francis$$Hfree_for_read</backlink><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/22484861$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Padmanabhan, Priya</creatorcontrib><creatorcontrib>Babaoğlu, Mehmet</creatorcontrib><creatorcontrib>Terry, Norman</creatorcontrib><title>comparative transcriptomic analysis of the extremely boron tolerant plant Puccinellia distans with the moderately boron tolerant Gypsophila arrostil</title><title>Plant cell reports</title><addtitle>Plant Cell Rep</addtitle><addtitle>Plant Cell Rep</addtitle><description>The Turkish ecotype of Puccinellia distans displays exceptional boron (B) tolerance, >1,250 mg B L−1, compared to <50 mg B L−1 for Gypsophila arrostil. In the present study, we compare the molecular basis for the difference in B tolerance between the two species by constructing high B-responsive suppression subtractive hybridization libraries to identify the upregulated genes. A total of 219 and 113 unique non-redundant expressed sequence tags (ESTs) were identified and functionally classified in P. distans and G. arrostil, respectively. In addition, 63 ESTs were down-regulated in P. distans in response to high B. The majority of the high B upregulated genes belong to four categories: metabolism, protein synthesis, cellular organization, and stress/defense. We hypothesize that the superior B tolerance exhibited by P. distans may be due to its ability to restrict the accumulation of B in plant tissues through the upregulated expression of efflux transporters comparable to the Bot1 transporter of barley. In addition, our results are consistent with the view that other molecular mechanisms involved in stress/defense, such as detoxification, anti-oxidative, and signaling pathways, are needed to tolerate B-toxicity stress. Key message The molecular basis of boron tolerance of two plant species (Puccinellia distans and Gypsophila arrostil) that differ greatly in their boron tolerance was studied in this manuscript.</description><subject>Adaptation, Physiological - drug effects</subject><subject>Adaptation, Physiological - genetics</subject><subject>barley</subject><subject>Biological and medical sciences</subject><subject>Biological Transport - drug effects</subject><subject>Biological Transport - genetics</subject><subject>Biomedical and Life Sciences</subject><subject>Biotechnology</subject><subject>Boron</subject><subject>Boron - toxicity</subject><subject>Caryophyllaceae - drug effects</subject><subject>Caryophyllaceae - genetics</subject><subject>Caryophyllaceae - metabolism</subject><subject>Cell Biology</subject><subject>Detoxification</subject><subject>Expressed Sequence Tags</subject><subject>Fundamental and applied biological sciences. Psychology</subject><subject>Gene Expression Profiling</subject><subject>gene expression regulation</subject><subject>Gene Expression Regulation, Plant - drug effects</subject><subject>genes</subject><subject>Genes, Plant - genetics</subject><subject>Gypsophila</subject><subject>Life Sciences</subject><subject>Original Paper</subject><subject>Plant Biochemistry</subject><subject>Plant Proteins - genetics</subject><subject>Plant Proteins - metabolism</subject><subject>Plant Sciences</subject><subject>Plant species</subject><subject>Plant tissues</subject><subject>Poaceae - drug effects</subject><subject>Poaceae - genetics</subject><subject>Poaceae - metabolism</subject><subject>Protein Biosynthesis - drug effects</subject><subject>Protein Biosynthesis - genetics</subject><subject>Protein synthesis</subject><subject>Puccinellia distans</subject><subject>Reverse Transcriptase Polymerase Chain Reaction</subject><subject>Signal Transduction - drug effects</subject><subject>Signal Transduction - genetics</subject><subject>Stress, Physiological - drug effects</subject><subject>Stress, Physiological - genetics</subject><subject>suppression subtractive hybridization</subject><subject>transcriptomics</subject><subject>transporters</subject><subject>Up-Regulation - drug effects</subject><subject>Up-Regulation - genetics</subject><issn>0721-7714</issn><issn>1432-203X</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2012</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><sourceid>ABUWG</sourceid><sourceid>AFKRA</sourceid><sourceid>AZQEC</sourceid><sourceid>BENPR</sourceid><sourceid>CCPQU</sourceid><sourceid>DWQXO</sourceid><sourceid>GNUQQ</sourceid><recordid>eNp1kc1u1DAUhS0EotPCA7ABS6jLwLWdOPESVVCQKoEEldhF147TceWMg-0pzHvwwDhk-FnAxl7c7xxfn0PIEwYvGED7MgFwpSpgvGK8kZW8RzasFrziID7fJxtoOavaltUn5DSlW4AybOVDcsJ53dWdZBvy3YRpxojZ3VmaI-6SiW7OYXKG4g79IblEw0jz1lL7LUc7WX-gOsSwozl4WxSZzn45P-yNcTvrvUM6uJSLF_3q8vandgpDYfM_xJeHOYV56zxSjDGk7Pwj8mBEn-zj431Grt-8_nTxtrp6f_nu4tVVZWouc6U6AZ0yAyjWoOEWtB4aVSvd6Ua3AGAa0XQaUY8cUAvRWjMIo2U3cKxBizPyfPWdY_iytyn3t2Efy69Tz4DLlknFZaHYSpmyXYp27OfoJoyHAvVLD_3aQ1966Jce-kXz9Oi815Mdfit-BV-A8yOAyaAfSxTGpT-cZEpAvXB85VIZ7W5s_HvF_7_-bBWNGHq8icX4-iMv7ZdMmJKciR_iBq2x</recordid><startdate>20120801</startdate><enddate>20120801</enddate><creator>Padmanabhan, Priya</creator><creator>Babaoğlu, Mehmet</creator><creator>Terry, Norman</creator><general>Springer-Verlag</general><general>Springer</general><general>Springer Nature B.V</general><scope>FBQ</scope><scope>IQODW</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7QL</scope><scope>7T5</scope><scope>7T7</scope><scope>7TM</scope><scope>7U9</scope><scope>7X2</scope><scope>7X7</scope><scope>7XB</scope><scope>88A</scope><scope>88E</scope><scope>8AO</scope><scope>8FD</scope><scope>8FE</scope><scope>8FH</scope><scope>8FI</scope><scope>8FJ</scope><scope>8FK</scope><scope>ABUWG</scope><scope>AEUYN</scope><scope>AFKRA</scope><scope>ATCPS</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BHPHI</scope><scope>C1K</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FR3</scope><scope>FYUFA</scope><scope>GHDGH</scope><scope>GNUQQ</scope><scope>H94</scope><scope>HCIFZ</scope><scope>K9.</scope><scope>LK8</scope><scope>M0K</scope><scope>M0S</scope><scope>M1P</scope><scope>M7N</scope><scope>M7P</scope><scope>P64</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>RC3</scope></search><sort><creationdate>20120801</creationdate><title>comparative transcriptomic analysis of the extremely boron tolerant plant Puccinellia distans with the moderately boron tolerant Gypsophila arrostil</title><author>Padmanabhan, Priya ; Babaoğlu, Mehmet ; Terry, Norman</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c426t-983089cd0915ac2e0bbd5949b8b5b7000c5358baabf20ab337ecd3cb68d2a40b3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2012</creationdate><topic>Adaptation, Physiological - drug effects</topic><topic>Adaptation, Physiological - genetics</topic><topic>barley</topic><topic>Biological and medical sciences</topic><topic>Biological Transport - drug effects</topic><topic>Biological Transport - genetics</topic><topic>Biomedical and Life Sciences</topic><topic>Biotechnology</topic><topic>Boron</topic><topic>Boron - toxicity</topic><topic>Caryophyllaceae - drug effects</topic><topic>Caryophyllaceae - genetics</topic><topic>Caryophyllaceae - metabolism</topic><topic>Cell Biology</topic><topic>Detoxification</topic><topic>Expressed Sequence Tags</topic><topic>Fundamental and applied biological sciences. Psychology</topic><topic>Gene Expression Profiling</topic><topic>gene expression regulation</topic><topic>Gene Expression Regulation, Plant - drug effects</topic><topic>genes</topic><topic>Genes, Plant - genetics</topic><topic>Gypsophila</topic><topic>Life Sciences</topic><topic>Original Paper</topic><topic>Plant Biochemistry</topic><topic>Plant Proteins - genetics</topic><topic>Plant Proteins - metabolism</topic><topic>Plant Sciences</topic><topic>Plant species</topic><topic>Plant tissues</topic><topic>Poaceae - drug effects</topic><topic>Poaceae - genetics</topic><topic>Poaceae - metabolism</topic><topic>Protein Biosynthesis - drug effects</topic><topic>Protein Biosynthesis - genetics</topic><topic>Protein synthesis</topic><topic>Puccinellia distans</topic><topic>Reverse Transcriptase Polymerase Chain Reaction</topic><topic>Signal Transduction - drug effects</topic><topic>Signal Transduction - genetics</topic><topic>Stress, Physiological - drug effects</topic><topic>Stress, Physiological - genetics</topic><topic>suppression subtractive hybridization</topic><topic>transcriptomics</topic><topic>transporters</topic><topic>Up-Regulation - drug effects</topic><topic>Up-Regulation - genetics</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Padmanabhan, Priya</creatorcontrib><creatorcontrib>Babaoğlu, Mehmet</creatorcontrib><creatorcontrib>Terry, Norman</creatorcontrib><collection>AGRIS</collection><collection>Pascal-Francis</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>ProQuest Central (Corporate)</collection><collection>Bacteriology Abstracts (Microbiology B)</collection><collection>Immunology Abstracts</collection><collection>Industrial and Applied Microbiology Abstracts (Microbiology A)</collection><collection>Nucleic Acids Abstracts</collection><collection>Virology and AIDS Abstracts</collection><collection>Agricultural Science Collection</collection><collection>Health & Medical Collection</collection><collection>ProQuest Central (purchase pre-March 2016)</collection><collection>Biology Database (Alumni Edition)</collection><collection>Medical Database (Alumni Edition)</collection><collection>ProQuest Pharma Collection</collection><collection>Technology Research Database</collection><collection>ProQuest SciTech Collection</collection><collection>ProQuest Natural Science Collection</collection><collection>Hospital Premium Collection</collection><collection>Hospital Premium Collection (Alumni Edition)</collection><collection>ProQuest Central (Alumni) (purchase pre-March 2016)</collection><collection>ProQuest Central (Alumni Edition)</collection><collection>ProQuest One Sustainability</collection><collection>ProQuest Central UK/Ireland</collection><collection>Agricultural & Environmental Science Collection</collection><collection>ProQuest Central Essentials</collection><collection>Biological Science Collection</collection><collection>ProQuest Central</collection><collection>Natural Science Collection</collection><collection>Environmental Sciences and Pollution Management</collection><collection>ProQuest One Community College</collection><collection>ProQuest Central Korea</collection><collection>Engineering Research Database</collection><collection>Health Research Premium Collection</collection><collection>Health Research Premium Collection (Alumni)</collection><collection>ProQuest Central Student</collection><collection>AIDS and Cancer Research Abstracts</collection><collection>SciTech Premium Collection</collection><collection>ProQuest Health & Medical Complete (Alumni)</collection><collection>ProQuest Biological Science Collection</collection><collection>Agricultural Science Database</collection><collection>Health & Medical Collection (Alumni Edition)</collection><collection>Medical Database</collection><collection>Algology Mycology and Protozoology Abstracts (Microbiology C)</collection><collection>Biological Science Database</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>Genetics Abstracts</collection><jtitle>Plant cell reports</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Padmanabhan, Priya</au><au>Babaoğlu, Mehmet</au><au>Terry, Norman</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>comparative transcriptomic analysis of the extremely boron tolerant plant Puccinellia distans with the moderately boron tolerant Gypsophila arrostil</atitle><jtitle>Plant cell reports</jtitle><stitle>Plant Cell Rep</stitle><addtitle>Plant Cell Rep</addtitle><date>2012-08-01</date><risdate>2012</risdate><volume>31</volume><issue>8</issue><spage>1407</spage><epage>1413</epage><pages>1407-1413</pages><issn>0721-7714</issn><eissn>1432-203X</eissn><coden>PCRPD8</coden><abstract>The Turkish ecotype of Puccinellia distans displays exceptional boron (B) tolerance, >1,250 mg B L−1, compared to <50 mg B L−1 for Gypsophila arrostil. In the present study, we compare the molecular basis for the difference in B tolerance between the two species by constructing high B-responsive suppression subtractive hybridization libraries to identify the upregulated genes. A total of 219 and 113 unique non-redundant expressed sequence tags (ESTs) were identified and functionally classified in P. distans and G. arrostil, respectively. In addition, 63 ESTs were down-regulated in P. distans in response to high B. The majority of the high B upregulated genes belong to four categories: metabolism, protein synthesis, cellular organization, and stress/defense. We hypothesize that the superior B tolerance exhibited by P. distans may be due to its ability to restrict the accumulation of B in plant tissues through the upregulated expression of efflux transporters comparable to the Bot1 transporter of barley. In addition, our results are consistent with the view that other molecular mechanisms involved in stress/defense, such as detoxification, anti-oxidative, and signaling pathways, are needed to tolerate B-toxicity stress. Key message The molecular basis of boron tolerance of two plant species (Puccinellia distans and Gypsophila arrostil) that differ greatly in their boron tolerance was studied in this manuscript.</abstract><cop>Berlin/Heidelberg</cop><pub>Springer-Verlag</pub><pmid>22484861</pmid><doi>10.1007/s00299-012-1256-6</doi><tpages>7</tpages></addata></record> |
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| issn | 0721-7714 1432-203X |
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| subjects | Adaptation, Physiological - drug effects Adaptation, Physiological - genetics barley Biological and medical sciences Biological Transport - drug effects Biological Transport - genetics Biomedical and Life Sciences Biotechnology Boron Boron - toxicity Caryophyllaceae - drug effects Caryophyllaceae - genetics Caryophyllaceae - metabolism Cell Biology Detoxification Expressed Sequence Tags Fundamental and applied biological sciences. Psychology Gene Expression Profiling gene expression regulation Gene Expression Regulation, Plant - drug effects genes Genes, Plant - genetics Gypsophila Life Sciences Original Paper Plant Biochemistry Plant Proteins - genetics Plant Proteins - metabolism Plant Sciences Plant species Plant tissues Poaceae - drug effects Poaceae - genetics Poaceae - metabolism Protein Biosynthesis - drug effects Protein Biosynthesis - genetics Protein synthesis Puccinellia distans Reverse Transcriptase Polymerase Chain Reaction Signal Transduction - drug effects Signal Transduction - genetics Stress, Physiological - drug effects Stress, Physiological - genetics suppression subtractive hybridization transcriptomics transporters Up-Regulation - drug effects Up-Regulation - genetics |
| title | comparative transcriptomic analysis of the extremely boron tolerant plant Puccinellia distans with the moderately boron tolerant Gypsophila arrostil |
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