KH domain protein RCF3 is a tissue-biased regulator of the plant miRNA biogenesis cofactor HYL1

The biogenesis of microRNAs (miRNAs), which regulate mRNA abundance through posttranscriptional silencing, comprises multiple well-orchestrated processing steps. We have identified theArabidopsis thalianaK homology (KH) domain protein REGULATOR OF CBF GENE EXPRESSION 3 (RCF3) as a cofactor affecting...

Ausführliche Beschreibung

Gespeichert in:
Bibliographische Detailangaben
Veröffentlicht in:Proceedings of the National Academy of Sciences - PNAS 2015-11, Vol.112 (45), p.14096-14101
Hauptverfasser: Karlsson, Patricia, Christie, Michael Danger, Seymour, Danelle K., Wang, Huan, Wang, Xi, Hagmann, Jörg, Kulcheski, Franceli, Manavella, Pablo Andrés
Format: Artikel
Sprache:eng
Schlagworte:
Online-Zugang:Volltext
Tags: Tag hinzufügen
Keine Tags, Fügen Sie den ersten Tag hinzu!
container_end_page 14101
container_issue 45
container_start_page 14096
container_title Proceedings of the National Academy of Sciences - PNAS
container_volume 112
creator Karlsson, Patricia
Christie, Michael Danger
Seymour, Danelle K.
Wang, Huan
Wang, Xi
Hagmann, Jörg
Kulcheski, Franceli
Manavella, Pablo Andrés
description The biogenesis of microRNAs (miRNAs), which regulate mRNA abundance through posttranscriptional silencing, comprises multiple well-orchestrated processing steps. We have identified theArabidopsis thalianaK homology (KH) domain protein REGULATOR OF CBF GENE EXPRESSION 3 (RCF3) as a cofactor affecting miRNA biogenesis in specific plant tissues. MiRNA and miRNA-target levels were reduced in apex-enriched samples ofrcf3mutants, but not in other tissues. Mechanistically, RCF3 affects miRNA biogenesis through nuclear interactions with the phosphatases C-TERMINAL DOMAIN PHOSPHATASE-LIKE1 and 2 (CPL1 and CPL2). These interactions are essential to regulate the phosphorylation status, and thus the activity, of the double-stranded RNA binding protein and DICER-LIKE1 (DCL1) cofactor HYPONASTIC LEAVES1 (HYL1).
doi_str_mv 10.1073/pnas.1512865112
format Article
fullrecord <record><control><sourceid>jstor_pnas_</sourceid><recordid>TN_cdi_pnas_primary_112_45_14096</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><jstor_id>26466375</jstor_id><sourcerecordid>26466375</sourcerecordid><originalsourceid>FETCH-LOGICAL-c501t-c58d23b8f610cead3c617ab3ac0444068f98c4114942275d68031fe752f4b3d03</originalsourceid><addsrcrecordid>eNqN0b1v1DAYBnALgehRmJlAlrqwpH1ffyVZkKoT7SFOIFUwMFlO4lx9SuJgJ0j89zi661GYWOIhv_fxx0PIa4RLhJxfjYOJlyiRFUoisidkhVBipkQJT8kKgOVZIZg4Iy9i3ANAKQt4Ts5Y0gwBV0R_2tDG98YNdAx-smm9W99w6iI1dHIxzjarnIm2ocHu5s5MPlDf0une0rEzw0R7d_f5mlbO7-xgY5qrfWvqhW2-b_EledaaLtpXx_WcfLv58HW9ybZfbj-ur7dZLQGn9C0axquiVQi1NQ2vFeam4qYGIQSooi2LWiCKUjCWy0YVwLG1uWStqHgD_Jy8P-SOc9XbprbDFEynx-B6E35pb5z--8_g7vXO_9RCSY4iTwHvjgHB_5htnHTvYm27dEfr56gxV4xLJtn_UM4UQJ4v9OIfuvdzGNJLLCptW3LkSV0dVB18jMG2p3Mj6KVnvfSs__ScJt4-vu7JPxSbAD2CZfIUh0wLqVFAqRJ5cyD7mNp6FCGU4rnkvwFDd7W_</addsrcrecordid><sourcetype>Open Access Repository</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype><pqid>1734739313</pqid></control><display><type>article</type><title>KH domain protein RCF3 is a tissue-biased regulator of the plant miRNA biogenesis cofactor HYL1</title><source>MEDLINE</source><source>PubMed Central</source><source>Alma/SFX Local Collection</source><source>Free Full-Text Journals in Chemistry</source><source>JSTOR</source><creator>Karlsson, Patricia ; Christie, Michael Danger ; Seymour, Danelle K. ; Wang, Huan ; Wang, Xi ; Hagmann, Jörg ; Kulcheski, Franceli ; Manavella, Pablo Andrés</creator><creatorcontrib>Karlsson, Patricia ; Christie, Michael Danger ; Seymour, Danelle K. ; Wang, Huan ; Wang, Xi ; Hagmann, Jörg ; Kulcheski, Franceli ; Manavella, Pablo Andrés</creatorcontrib><description>The biogenesis of microRNAs (miRNAs), which regulate mRNA abundance through posttranscriptional silencing, comprises multiple well-orchestrated processing steps. We have identified theArabidopsis thalianaK homology (KH) domain protein REGULATOR OF CBF GENE EXPRESSION 3 (RCF3) as a cofactor affecting miRNA biogenesis in specific plant tissues. MiRNA and miRNA-target levels were reduced in apex-enriched samples ofrcf3mutants, but not in other tissues. Mechanistically, RCF3 affects miRNA biogenesis through nuclear interactions with the phosphatases C-TERMINAL DOMAIN PHOSPHATASE-LIKE1 and 2 (CPL1 and CPL2). These interactions are essential to regulate the phosphorylation status, and thus the activity, of the double-stranded RNA binding protein and DICER-LIKE1 (DCL1) cofactor HYPONASTIC LEAVES1 (HYL1).</description><identifier>ISSN: 0027-8424</identifier><identifier>EISSN: 1091-6490</identifier><identifier>DOI: 10.1073/pnas.1512865112</identifier><identifier>PMID: 26512101</identifier><language>eng</language><publisher>United States: National Academy of Sciences</publisher><subject>Arabidopsis - metabolism ; Arabidopsis Proteins - metabolism ; Arabidopsis thaliana ; Base Sequence ; Biological Sciences ; Biosynthesis ; DNA Primers - genetics ; Flowers &amp; plants ; Luciferases ; MicroRNAs - biosynthesis ; Molecular Sequence Data ; Mutation ; Proteins ; Reverse Transcriptase Polymerase Chain Reaction ; Ribonucleic acid ; RNA ; RNA-Binding Proteins - metabolism ; Sequence Analysis, DNA ; Tissues ; Transgenes - genetics</subject><ispartof>Proceedings of the National Academy of Sciences - PNAS, 2015-11, Vol.112 (45), p.14096-14101</ispartof><rights>Volumes 1–89 and 106–112, copyright as a collective work only; author(s) retains copyright to individual articles</rights><rights>Copyright National Academy of Sciences Nov 10, 2015</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c501t-c58d23b8f610cead3c617ab3ac0444068f98c4114942275d68031fe752f4b3d03</citedby><cites>FETCH-LOGICAL-c501t-c58d23b8f610cead3c617ab3ac0444068f98c4114942275d68031fe752f4b3d03</cites><orcidid>0000-0003-3589-4414</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Uhttp://www.pnas.org/content/112/45.cover.gif</thumbnail><linktopdf>$$Uhttps://www.jstor.org/stable/pdf/26466375$$EPDF$$P50$$Gjstor$$H</linktopdf><linktohtml>$$Uhttps://www.jstor.org/stable/26466375$$EHTML$$P50$$Gjstor$$H</linktohtml><link.rule.ids>230,315,728,781,785,804,886,27929,27930,53796,53798,58022,58255</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/26512101$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Karlsson, Patricia</creatorcontrib><creatorcontrib>Christie, Michael Danger</creatorcontrib><creatorcontrib>Seymour, Danelle K.</creatorcontrib><creatorcontrib>Wang, Huan</creatorcontrib><creatorcontrib>Wang, Xi</creatorcontrib><creatorcontrib>Hagmann, Jörg</creatorcontrib><creatorcontrib>Kulcheski, Franceli</creatorcontrib><creatorcontrib>Manavella, Pablo Andrés</creatorcontrib><title>KH domain protein RCF3 is a tissue-biased regulator of the plant miRNA biogenesis cofactor HYL1</title><title>Proceedings of the National Academy of Sciences - PNAS</title><addtitle>Proc Natl Acad Sci U S A</addtitle><description>The biogenesis of microRNAs (miRNAs), which regulate mRNA abundance through posttranscriptional silencing, comprises multiple well-orchestrated processing steps. We have identified theArabidopsis thalianaK homology (KH) domain protein REGULATOR OF CBF GENE EXPRESSION 3 (RCF3) as a cofactor affecting miRNA biogenesis in specific plant tissues. MiRNA and miRNA-target levels were reduced in apex-enriched samples ofrcf3mutants, but not in other tissues. Mechanistically, RCF3 affects miRNA biogenesis through nuclear interactions with the phosphatases C-TERMINAL DOMAIN PHOSPHATASE-LIKE1 and 2 (CPL1 and CPL2). These interactions are essential to regulate the phosphorylation status, and thus the activity, of the double-stranded RNA binding protein and DICER-LIKE1 (DCL1) cofactor HYPONASTIC LEAVES1 (HYL1).</description><subject>Arabidopsis - metabolism</subject><subject>Arabidopsis Proteins - metabolism</subject><subject>Arabidopsis thaliana</subject><subject>Base Sequence</subject><subject>Biological Sciences</subject><subject>Biosynthesis</subject><subject>DNA Primers - genetics</subject><subject>Flowers &amp; plants</subject><subject>Luciferases</subject><subject>MicroRNAs - biosynthesis</subject><subject>Molecular Sequence Data</subject><subject>Mutation</subject><subject>Proteins</subject><subject>Reverse Transcriptase Polymerase Chain Reaction</subject><subject>Ribonucleic acid</subject><subject>RNA</subject><subject>RNA-Binding Proteins - metabolism</subject><subject>Sequence Analysis, DNA</subject><subject>Tissues</subject><subject>Transgenes - genetics</subject><issn>0027-8424</issn><issn>1091-6490</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2015</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNqN0b1v1DAYBnALgehRmJlAlrqwpH1ffyVZkKoT7SFOIFUwMFlO4lx9SuJgJ0j89zi661GYWOIhv_fxx0PIa4RLhJxfjYOJlyiRFUoisidkhVBipkQJT8kKgOVZIZg4Iy9i3ANAKQt4Ts5Y0gwBV0R_2tDG98YNdAx-smm9W99w6iI1dHIxzjarnIm2ocHu5s5MPlDf0une0rEzw0R7d_f5mlbO7-xgY5qrfWvqhW2-b_EledaaLtpXx_WcfLv58HW9ybZfbj-ur7dZLQGn9C0axquiVQi1NQ2vFeam4qYGIQSooi2LWiCKUjCWy0YVwLG1uWStqHgD_Jy8P-SOc9XbprbDFEynx-B6E35pb5z--8_g7vXO_9RCSY4iTwHvjgHB_5htnHTvYm27dEfr56gxV4xLJtn_UM4UQJ4v9OIfuvdzGNJLLCptW3LkSV0dVB18jMG2p3Mj6KVnvfSs__ScJt4-vu7JPxSbAD2CZfIUh0wLqVFAqRJ5cyD7mNp6FCGU4rnkvwFDd7W_</recordid><startdate>20151110</startdate><enddate>20151110</enddate><creator>Karlsson, Patricia</creator><creator>Christie, Michael Danger</creator><creator>Seymour, Danelle K.</creator><creator>Wang, Huan</creator><creator>Wang, Xi</creator><creator>Hagmann, Jörg</creator><creator>Kulcheski, Franceli</creator><creator>Manavella, Pablo Andrés</creator><general>National Academy of Sciences</general><general>National Acad Sciences</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7QG</scope><scope>7QL</scope><scope>7QP</scope><scope>7QR</scope><scope>7SN</scope><scope>7SS</scope><scope>7T5</scope><scope>7TK</scope><scope>7TM</scope><scope>7TO</scope><scope>7U9</scope><scope>8FD</scope><scope>C1K</scope><scope>FR3</scope><scope>H94</scope><scope>M7N</scope><scope>P64</scope><scope>RC3</scope><scope>7X8</scope><scope>5PM</scope><orcidid>https://orcid.org/0000-0003-3589-4414</orcidid></search><sort><creationdate>20151110</creationdate><title>KH domain protein RCF3 is a tissue-biased regulator of the plant miRNA biogenesis cofactor HYL1</title><author>Karlsson, Patricia ; Christie, Michael Danger ; Seymour, Danelle K. ; Wang, Huan ; Wang, Xi ; Hagmann, Jörg ; Kulcheski, Franceli ; Manavella, Pablo Andrés</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c501t-c58d23b8f610cead3c617ab3ac0444068f98c4114942275d68031fe752f4b3d03</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2015</creationdate><topic>Arabidopsis - metabolism</topic><topic>Arabidopsis Proteins - metabolism</topic><topic>Arabidopsis thaliana</topic><topic>Base Sequence</topic><topic>Biological Sciences</topic><topic>Biosynthesis</topic><topic>DNA Primers - genetics</topic><topic>Flowers &amp; plants</topic><topic>Luciferases</topic><topic>MicroRNAs - biosynthesis</topic><topic>Molecular Sequence Data</topic><topic>Mutation</topic><topic>Proteins</topic><topic>Reverse Transcriptase Polymerase Chain Reaction</topic><topic>Ribonucleic acid</topic><topic>RNA</topic><topic>RNA-Binding Proteins - metabolism</topic><topic>Sequence Analysis, DNA</topic><topic>Tissues</topic><topic>Transgenes - genetics</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Karlsson, Patricia</creatorcontrib><creatorcontrib>Christie, Michael Danger</creatorcontrib><creatorcontrib>Seymour, Danelle K.</creatorcontrib><creatorcontrib>Wang, Huan</creatorcontrib><creatorcontrib>Wang, Xi</creatorcontrib><creatorcontrib>Hagmann, Jörg</creatorcontrib><creatorcontrib>Kulcheski, Franceli</creatorcontrib><creatorcontrib>Manavella, Pablo Andrés</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Animal Behavior Abstracts</collection><collection>Bacteriology Abstracts (Microbiology B)</collection><collection>Calcium &amp; Calcified Tissue Abstracts</collection><collection>Chemoreception Abstracts</collection><collection>Ecology Abstracts</collection><collection>Entomology Abstracts (Full archive)</collection><collection>Immunology Abstracts</collection><collection>Neurosciences Abstracts</collection><collection>Nucleic Acids Abstracts</collection><collection>Oncogenes and Growth Factors Abstracts</collection><collection>Virology and AIDS Abstracts</collection><collection>Technology Research Database</collection><collection>Environmental Sciences and Pollution Management</collection><collection>Engineering Research Database</collection><collection>AIDS and Cancer Research Abstracts</collection><collection>Algology Mycology and Protozoology Abstracts (Microbiology C)</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Genetics Abstracts</collection><collection>MEDLINE - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><jtitle>Proceedings of the National Academy of Sciences - PNAS</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Karlsson, Patricia</au><au>Christie, Michael Danger</au><au>Seymour, Danelle K.</au><au>Wang, Huan</au><au>Wang, Xi</au><au>Hagmann, Jörg</au><au>Kulcheski, Franceli</au><au>Manavella, Pablo Andrés</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>KH domain protein RCF3 is a tissue-biased regulator of the plant miRNA biogenesis cofactor HYL1</atitle><jtitle>Proceedings of the National Academy of Sciences - PNAS</jtitle><addtitle>Proc Natl Acad Sci U S A</addtitle><date>2015-11-10</date><risdate>2015</risdate><volume>112</volume><issue>45</issue><spage>14096</spage><epage>14101</epage><pages>14096-14101</pages><issn>0027-8424</issn><eissn>1091-6490</eissn><abstract>The biogenesis of microRNAs (miRNAs), which regulate mRNA abundance through posttranscriptional silencing, comprises multiple well-orchestrated processing steps. We have identified theArabidopsis thalianaK homology (KH) domain protein REGULATOR OF CBF GENE EXPRESSION 3 (RCF3) as a cofactor affecting miRNA biogenesis in specific plant tissues. MiRNA and miRNA-target levels were reduced in apex-enriched samples ofrcf3mutants, but not in other tissues. Mechanistically, RCF3 affects miRNA biogenesis through nuclear interactions with the phosphatases C-TERMINAL DOMAIN PHOSPHATASE-LIKE1 and 2 (CPL1 and CPL2). These interactions are essential to regulate the phosphorylation status, and thus the activity, of the double-stranded RNA binding protein and DICER-LIKE1 (DCL1) cofactor HYPONASTIC LEAVES1 (HYL1).</abstract><cop>United States</cop><pub>National Academy of Sciences</pub><pmid>26512101</pmid><doi>10.1073/pnas.1512865112</doi><tpages>6</tpages><orcidid>https://orcid.org/0000-0003-3589-4414</orcidid><oa>free_for_read</oa></addata></record>
fulltext fulltext
identifier ISSN: 0027-8424
ispartof Proceedings of the National Academy of Sciences - PNAS, 2015-11, Vol.112 (45), p.14096-14101
issn 0027-8424
1091-6490
language eng
recordid cdi_pnas_primary_112_45_14096
source MEDLINE; PubMed Central; Alma/SFX Local Collection; Free Full-Text Journals in Chemistry; JSTOR
subjects Arabidopsis - metabolism
Arabidopsis Proteins - metabolism
Arabidopsis thaliana
Base Sequence
Biological Sciences
Biosynthesis
DNA Primers - genetics
Flowers & plants
Luciferases
MicroRNAs - biosynthesis
Molecular Sequence Data
Mutation
Proteins
Reverse Transcriptase Polymerase Chain Reaction
Ribonucleic acid
RNA
RNA-Binding Proteins - metabolism
Sequence Analysis, DNA
Tissues
Transgenes - genetics
title KH domain protein RCF3 is a tissue-biased regulator of the plant miRNA biogenesis cofactor HYL1
url https://sfx.bib-bvb.de/sfx_tum?ctx_ver=Z39.88-2004&ctx_enc=info:ofi/enc:UTF-8&ctx_tim=2024-12-13T00%3A21%3A08IST&url_ver=Z39.88-2004&url_ctx_fmt=infofi/fmt:kev:mtx:ctx&rfr_id=info:sid/primo.exlibrisgroup.com:primo3-Article-jstor_pnas_&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.genre=article&rft.atitle=KH%20domain%20protein%20RCF3%20is%20a%20tissue-biased%20regulator%20of%20the%20plant%20miRNA%20biogenesis%20cofactor%20HYL1&rft.jtitle=Proceedings%20of%20the%20National%20Academy%20of%20Sciences%20-%20PNAS&rft.au=Karlsson,%20Patricia&rft.date=2015-11-10&rft.volume=112&rft.issue=45&rft.spage=14096&rft.epage=14101&rft.pages=14096-14101&rft.issn=0027-8424&rft.eissn=1091-6490&rft_id=info:doi/10.1073/pnas.1512865112&rft_dat=%3Cjstor_pnas_%3E26466375%3C/jstor_pnas_%3E%3Curl%3E%3C/url%3E&disable_directlink=true&sfx.directlink=off&sfx.report_link=0&rft_id=info:oai/&rft_pqid=1734739313&rft_id=info:pmid/26512101&rft_jstor_id=26466375&rfr_iscdi=true