Drug repurposing against fucosyltransferase-2 via docking, STD-NMR, and molecular dynamic simulation studies
Aberrant fucosylation is the hallmark of malignant cell transformation, leading to many cellular events, such as uncontrolled cell proliferation, angiogenesis, tumor cell invasion, and metastasis. This increased fucosylation is caused due to the over-expression of fucosyltransferases (FUTs) that cat...
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description | Aberrant fucosylation is the hallmark of malignant cell transformation, leading to many cellular events, such as uncontrolled cell proliferation, angiogenesis, tumor cell invasion, and metastasis. This increased fucosylation is caused due to the over-expression of fucosyltransferases (FUTs) that catalyzes the transfer of the fucose (Fuc) residue from GDP-fucose (donor substrate) to various oligosaccharides, glycoproteins, and glycolipids (acceptor substrates). Hence, fucosyltransferases (FUTs) are considered as validated target for the drug discovery against on cancers. In the current study, a drug repurposing approach was deployed to identify new hits against fucosyltransferase 2 (FUT2), using computational and biophysical techniques. A library of 500 US-FDA approved drugs were screened in-silico against fucosyltransferase 2 (FUT2) donor and acceptor sites. Five drugs were predicted as hits, based on their significant docking scores (-5.8 to -8.2), and binding energies (-43 to -51.19 Kcal/mol). Furthermore, STD-NMR highlighted the epitope of these drugs in the binding site of fucosyltransferase 2 (FUT2). Simulation studies provided insights about the binding site of these drugs, and 4 of them, acarbose, ascorbic acid, ibuprofen, and enalaprilat dihydrate, were found as significant binders at the donor binding site of fucosyltransferase 2 (FUT2). Hence, the current study reports the repurposed drugs as potential hits against fucosyltransferase 2 (FUT2). These may be further studied through in-vitro and in-vivo inhibitory and mechanistic studies. |
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This increased fucosylation is caused due to the over-expression of fucosyltransferases (FUTs) that catalyzes the transfer of the fucose (Fuc) residue from GDP-fucose (donor substrate) to various oligosaccharides, glycoproteins, and glycolipids (acceptor substrates). Hence, fucosyltransferases (FUTs) are considered as validated target for the drug discovery against on cancers. In the current study, a drug repurposing approach was deployed to identify new hits against fucosyltransferase 2 (FUT2), using computational and biophysical techniques. A library of 500 US-FDA approved drugs were screened in-silico against fucosyltransferase 2 (FUT2) donor and acceptor sites. Five drugs were predicted as hits, based on their significant docking scores (-5.8 to -8.2), and binding energies (-43 to -51.19 Kcal/mol). Furthermore, STD-NMR highlighted the epitope of these drugs in the binding site of fucosyltransferase 2 (FUT2). Simulation studies provided insights about the binding site of these drugs, and 4 of them, acarbose, ascorbic acid, ibuprofen, and enalaprilat dihydrate, were found as significant binders at the donor binding site of fucosyltransferase 2 (FUT2). Hence, the current study reports the repurposed drugs as potential hits against fucosyltransferase 2 (FUT2). These may be further studied through in-vitro and in-vivo inhibitory and mechanistic studies.</description><identifier>ISSN: 1932-6203</identifier><identifier>EISSN: 1932-6203</identifier><identifier>DOI: 10.1371/journal.pone.0308517</identifier><identifier>PMID: 39485776</identifier><language>eng</language><publisher>United States: Public Library of Science</publisher><subject>Acarbose ; Amino acids ; Analysis ; Angiogenesis ; Antigenic determinants ; Ascorbic acid ; Binders ; Binding sites ; Biology and Life Sciences ; Cell adhesion & migration ; Cell proliferation ; Crystal structure ; Drug approval ; Drug development ; Drug discovery ; Drug Repositioning ; Drug therapy ; Drugs ; Enalapril ; Enalaprilat ; Enzyme Inhibitors - chemistry ; Enzyme Inhibitors - pharmacology ; Enzymes ; Epitopes ; Evaluation ; Force and energy ; Fucose ; Fucosyltransferases - chemistry ; Fucosyltransferases - metabolism ; Galactoside 2-a-L-fucosyltransferase ; Galactoside 2-alpha-L-fucosyltransferase ; GDP-fucose ; Glycolipids ; Glycoproteins ; Humans ; Ibuprofen ; Interoperability ; Lectins ; Ligands ; Magnetic Resonance Spectroscopy ; Medicine and Health Sciences ; Metastases ; Molecular docking ; Molecular Docking Simulation ; Molecular dynamics ; Molecular Dynamics Simulation ; Nematodes ; NMR ; Nuclear magnetic resonance ; Oligosaccharides ; Overexpression ; Physical Sciences ; Protein Binding ; Proteins ; R&D ; Research & development ; Sexually transmitted diseases ; Simulation</subject><ispartof>PloS one, 2024-11, Vol.19 (11), p.e0308517</ispartof><rights>Copyright: © 2024 Atif et al. This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.</rights><rights>COPYRIGHT 2024 Public Library of Science</rights><rights>2024 Atif et al. This is an open access article distributed under the terms of the Creative Commons Attribution License: http://creativecommons.org/licenses/by/4.0/ (the “License”), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License.</rights><rights>2024 Atif et al 2024 Atif et al</rights><rights>2024 Atif et al. This is an open access article distributed under the terms of the Creative Commons Attribution License: http://creativecommons.org/licenses/by/4.0/ (the “License”), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License.</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><cites>FETCH-LOGICAL-c506t-855fcdd5610de65204f11000ae550d1f13cba15eec35bb36b8976560d9cc2b843</cites><orcidid>0000-0003-2104-3862</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC11530067/pdf/$$EPDF$$P50$$Gpubmedcentral$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC11530067/$$EHTML$$P50$$Gpubmedcentral$$Hfree_for_read</linktohtml><link.rule.ids>230,314,727,780,784,864,885,2926,23864,27922,27923,53789,53791,79370,79371</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/39485776$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><contributor>Selvaraj, Gurudeeban</contributor><creatorcontrib>Atif, Muhammad</creatorcontrib><creatorcontrib>Zafar, Humaira</creatorcontrib><creatorcontrib>Wahab, Atia-Tul</creatorcontrib><creatorcontrib>Choudhary, M Iqbal</creatorcontrib><title>Drug repurposing against fucosyltransferase-2 via docking, STD-NMR, and molecular dynamic simulation studies</title><title>PloS one</title><addtitle>PLoS One</addtitle><description>Aberrant fucosylation is the hallmark of malignant cell transformation, leading to many cellular events, such as uncontrolled cell proliferation, angiogenesis, tumor cell invasion, and metastasis. This increased fucosylation is caused due to the over-expression of fucosyltransferases (FUTs) that catalyzes the transfer of the fucose (Fuc) residue from GDP-fucose (donor substrate) to various oligosaccharides, glycoproteins, and glycolipids (acceptor substrates). Hence, fucosyltransferases (FUTs) are considered as validated target for the drug discovery against on cancers. In the current study, a drug repurposing approach was deployed to identify new hits against fucosyltransferase 2 (FUT2), using computational and biophysical techniques. A library of 500 US-FDA approved drugs were screened in-silico against fucosyltransferase 2 (FUT2) donor and acceptor sites. Five drugs were predicted as hits, based on their significant docking scores (-5.8 to -8.2), and binding energies (-43 to -51.19 Kcal/mol). Furthermore, STD-NMR highlighted the epitope of these drugs in the binding site of fucosyltransferase 2 (FUT2). Simulation studies provided insights about the binding site of these drugs, and 4 of them, acarbose, ascorbic acid, ibuprofen, and enalaprilat dihydrate, were found as significant binders at the donor binding site of fucosyltransferase 2 (FUT2). Hence, the current study reports the repurposed drugs as potential hits against fucosyltransferase 2 (FUT2). These may be further studied through in-vitro and in-vivo inhibitory and mechanistic studies.</description><subject>Acarbose</subject><subject>Amino acids</subject><subject>Analysis</subject><subject>Angiogenesis</subject><subject>Antigenic determinants</subject><subject>Ascorbic acid</subject><subject>Binders</subject><subject>Binding sites</subject><subject>Biology and Life Sciences</subject><subject>Cell adhesion & migration</subject><subject>Cell proliferation</subject><subject>Crystal structure</subject><subject>Drug approval</subject><subject>Drug development</subject><subject>Drug discovery</subject><subject>Drug Repositioning</subject><subject>Drug therapy</subject><subject>Drugs</subject><subject>Enalapril</subject><subject>Enalaprilat</subject><subject>Enzyme Inhibitors - chemistry</subject><subject>Enzyme Inhibitors - pharmacology</subject><subject>Enzymes</subject><subject>Epitopes</subject><subject>Evaluation</subject><subject>Force and energy</subject><subject>Fucose</subject><subject>Fucosyltransferases - chemistry</subject><subject>Fucosyltransferases - metabolism</subject><subject>Galactoside 2-a-L-fucosyltransferase</subject><subject>Galactoside 2-alpha-L-fucosyltransferase</subject><subject>GDP-fucose</subject><subject>Glycolipids</subject><subject>Glycoproteins</subject><subject>Humans</subject><subject>Ibuprofen</subject><subject>Interoperability</subject><subject>Lectins</subject><subject>Ligands</subject><subject>Magnetic Resonance Spectroscopy</subject><subject>Medicine and Health Sciences</subject><subject>Metastases</subject><subject>Molecular docking</subject><subject>Molecular Docking Simulation</subject><subject>Molecular dynamics</subject><subject>Molecular Dynamics Simulation</subject><subject>Nematodes</subject><subject>NMR</subject><subject>Nuclear magnetic resonance</subject><subject>Oligosaccharides</subject><subject>Overexpression</subject><subject>Physical Sciences</subject><subject>Protein 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repurposing against fucosyltransferase-2 via docking, STD-NMR, and molecular dynamic simulation studies</title><author>Atif, Muhammad ; Zafar, Humaira ; Wahab, Atia-Tul ; Choudhary, M Iqbal</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c506t-855fcdd5610de65204f11000ae550d1f13cba15eec35bb36b8976560d9cc2b843</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2024</creationdate><topic>Acarbose</topic><topic>Amino acids</topic><topic>Analysis</topic><topic>Angiogenesis</topic><topic>Antigenic determinants</topic><topic>Ascorbic acid</topic><topic>Binders</topic><topic>Binding sites</topic><topic>Biology and Life Sciences</topic><topic>Cell adhesion & migration</topic><topic>Cell proliferation</topic><topic>Crystal structure</topic><topic>Drug approval</topic><topic>Drug development</topic><topic>Drug discovery</topic><topic>Drug Repositioning</topic><topic>Drug 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the hallmark of malignant cell transformation, leading to many cellular events, such as uncontrolled cell proliferation, angiogenesis, tumor cell invasion, and metastasis. This increased fucosylation is caused due to the over-expression of fucosyltransferases (FUTs) that catalyzes the transfer of the fucose (Fuc) residue from GDP-fucose (donor substrate) to various oligosaccharides, glycoproteins, and glycolipids (acceptor substrates). Hence, fucosyltransferases (FUTs) are considered as validated target for the drug discovery against on cancers. In the current study, a drug repurposing approach was deployed to identify new hits against fucosyltransferase 2 (FUT2), using computational and biophysical techniques. A library of 500 US-FDA approved drugs were screened in-silico against fucosyltransferase 2 (FUT2) donor and acceptor sites. Five drugs were predicted as hits, based on their significant docking scores (-5.8 to -8.2), and binding energies (-43 to -51.19 Kcal/mol). Furthermore, STD-NMR highlighted the epitope of these drugs in the binding site of fucosyltransferase 2 (FUT2). Simulation studies provided insights about the binding site of these drugs, and 4 of them, acarbose, ascorbic acid, ibuprofen, and enalaprilat dihydrate, were found as significant binders at the donor binding site of fucosyltransferase 2 (FUT2). Hence, the current study reports the repurposed drugs as potential hits against fucosyltransferase 2 (FUT2). These may be further studied through in-vitro and in-vivo inhibitory and mechanistic studies.</abstract><cop>United States</cop><pub>Public Library of Science</pub><pmid>39485776</pmid><doi>10.1371/journal.pone.0308517</doi><tpages>e0308517</tpages><orcidid>https://orcid.org/0000-0003-2104-3862</orcidid><oa>free_for_read</oa></addata></record> |
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subjects | Acarbose Amino acids Analysis Angiogenesis Antigenic determinants Ascorbic acid Binders Binding sites Biology and Life Sciences Cell adhesion & migration Cell proliferation Crystal structure Drug approval Drug development Drug discovery Drug Repositioning Drug therapy Drugs Enalapril Enalaprilat Enzyme Inhibitors - chemistry Enzyme Inhibitors - pharmacology Enzymes Epitopes Evaluation Force and energy Fucose Fucosyltransferases - chemistry Fucosyltransferases - metabolism Galactoside 2-a-L-fucosyltransferase Galactoside 2-alpha-L-fucosyltransferase GDP-fucose Glycolipids Glycoproteins Humans Ibuprofen Interoperability Lectins Ligands Magnetic Resonance Spectroscopy Medicine and Health Sciences Metastases Molecular docking Molecular Docking Simulation Molecular dynamics Molecular Dynamics Simulation Nematodes NMR Nuclear magnetic resonance Oligosaccharides Overexpression Physical Sciences Protein Binding Proteins R&D Research & development Sexually transmitted diseases Simulation |
title | Drug repurposing against fucosyltransferase-2 via docking, STD-NMR, and molecular dynamic simulation studies |
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