Spatial modelling of topsoil properties in Romania using geostatistical methods and machine learning

Various research topics from the field of soil science or agriculture require digital maps of soil properties as input data. Such maps can be achieved by digital soil mapping (DSM) techniques which have developed consistently during the last decades. Our research focuses on the application of geosta...

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Veröffentlicht in:PloS one 2023-08, Vol.18 (8), p.e0289286-e0289286
Hauptverfasser: Patriche, Cristian Valeriu, Rosca, Bogdan, Pîrnau, Radu Gabriel, Vasiliniuc, Ionut
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description Various research topics from the field of soil science or agriculture require digital maps of soil properties as input data. Such maps can be achieved by digital soil mapping (DSM) techniques which have developed consistently during the last decades. Our research focuses on the application of geostatistical methods (including ordinary kriging, regression-kriging and geographically weighted regression) and machine learning algorithms to produce high resolution digital maps of topsoil properties in Romania. Six continuous predictors were considered in our study (digital elevation model, topographic wetness index, normalized difference vegetation index, slope, latitude and longitude). A tolerance test was performed to ensure that all predictors can be used for the purpose of digital soil mapping. The input soil data was extracted from the LUCAS database and includes 7 chemical properties (pH, electrical conductivity, calcium carbonate, organic carbon, N, P, K) and the particle-size fractions (sand, silt, clay). The spatial autocorrelation is higher for pH, organic carbon and calcium carbonate, as indicated by the partial sill / nugget ratio of semivariograms, meaning that these properties are more predictable than the others by kriging interpolation. The optimal DSM method was selected by independent sample validation, using resampled statistics from 100 samples randomly extracted from the validation dataset. Also, an additional independent sample of soil profiles, comprising legacy soil data, and the 200k Romania soil map were used for a supplementary validation. The results show that machine learning and regression-kriging are the optimal methods in most cases. Among the machine learning tested algorithms, the best performance is associated with Support Vector Machines and Random Forests methods. The geographically weighted regression is also among the optimum methods for pH and calcium carbonates spatial prediction. Good predictions were achieved for pH (R.sup.2 of 0.417-0.469, depending on the method), organic carbon (R.sup.2 of 0.302-0.443), calcium carbonates (R.sup.2 of 0.300-0.330) and moderate predictions for electric conductivity, total nitrogen, silt and sand (R.sup.2 of 0.155-0.331), while the lowest prediction characterizes the phosphorous content (R.sup.2 of 0.015-0.044). LUCAS proved to be a reliable and useful soil database and the achieved spatial distributions of soil properties can be further used for national and regional soil studies.
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Such maps can be achieved by digital soil mapping (DSM) techniques which have developed consistently during the last decades. Our research focuses on the application of geostatistical methods (including ordinary kriging, regression-kriging and geographically weighted regression) and machine learning algorithms to produce high resolution digital maps of topsoil properties in Romania. Six continuous predictors were considered in our study (digital elevation model, topographic wetness index, normalized difference vegetation index, slope, latitude and longitude). A tolerance test was performed to ensure that all predictors can be used for the purpose of digital soil mapping. The input soil data was extracted from the LUCAS database and includes 7 chemical properties (pH, electrical conductivity, calcium carbonate, organic carbon, N, P, K) and the particle-size fractions (sand, silt, clay). The spatial autocorrelation is higher for pH, organic carbon and calcium carbonate, as indicated by the partial sill / nugget ratio of semivariograms, meaning that these properties are more predictable than the others by kriging interpolation. The optimal DSM method was selected by independent sample validation, using resampled statistics from 100 samples randomly extracted from the validation dataset. Also, an additional independent sample of soil profiles, comprising legacy soil data, and the 200k Romania soil map were used for a supplementary validation. The results show that machine learning and regression-kriging are the optimal methods in most cases. Among the machine learning tested algorithms, the best performance is associated with Support Vector Machines and Random Forests methods. The geographically weighted regression is also among the optimum methods for pH and calcium carbonates spatial prediction. Good predictions were achieved for pH (R.sup.2 of 0.417-0.469, depending on the method), organic carbon (R.sup.2 of 0.302-0.443), calcium carbonates (R.sup.2 of 0.300-0.330) and moderate predictions for electric conductivity, total nitrogen, silt and sand (R.sup.2 of 0.155-0.331), while the lowest prediction characterizes the phosphorous content (R.sup.2 of 0.015-0.044). 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LUCAS proved to be a reliable and useful soil database and the achieved spatial distributions of soil properties can be further used for national and regional soil studies.</description><subject>Agriculture</subject><subject>Algorithms</subject><subject>Analysis</subject><subject>Biology and Life Sciences</subject><subject>Calcium carbonate</subject><subject>Carbon</subject><subject>Carbonates</subject><subject>Chemical properties</subject><subject>Climate change</subject><subject>Computer and Information Sciences</subject><subject>Data mining</subject><subject>Digital Elevation Models</subject><subject>Digital mapping</subject><subject>Digital maps</subject><subject>Earth Sciences</subject><subject>Ecology and Environmental Sciences</subject><subject>Electric properties</subject><subject>Electrical conductivity</subject><subject>Electrical resistivity</subject><subject>Geographic information 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one</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Patriche, Cristian Valeriu</au><au>Rosca, Bogdan</au><au>Pîrnau, Radu Gabriel</au><au>Vasiliniuc, Ionut</au><au>Sanusi, Mohamad Syazwan Mohd</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Spatial modelling of topsoil properties in Romania using geostatistical methods and machine learning</atitle><jtitle>PloS one</jtitle><date>2023-08-23</date><risdate>2023</risdate><volume>18</volume><issue>8</issue><spage>e0289286</spage><epage>e0289286</epage><pages>e0289286-e0289286</pages><issn>1932-6203</issn><eissn>1932-6203</eissn><abstract>Various research topics from the field of soil science or agriculture require digital maps of soil properties as input data. Such maps can be achieved by digital soil mapping (DSM) techniques which have developed consistently during the last decades. Our research focuses on the application of geostatistical methods (including ordinary kriging, regression-kriging and geographically weighted regression) and machine learning algorithms to produce high resolution digital maps of topsoil properties in Romania. Six continuous predictors were considered in our study (digital elevation model, topographic wetness index, normalized difference vegetation index, slope, latitude and longitude). A tolerance test was performed to ensure that all predictors can be used for the purpose of digital soil mapping. The input soil data was extracted from the LUCAS database and includes 7 chemical properties (pH, electrical conductivity, calcium carbonate, organic carbon, N, P, K) and the particle-size fractions (sand, silt, clay). The spatial autocorrelation is higher for pH, organic carbon and calcium carbonate, as indicated by the partial sill / nugget ratio of semivariograms, meaning that these properties are more predictable than the others by kriging interpolation. The optimal DSM method was selected by independent sample validation, using resampled statistics from 100 samples randomly extracted from the validation dataset. Also, an additional independent sample of soil profiles, comprising legacy soil data, and the 200k Romania soil map were used for a supplementary validation. The results show that machine learning and regression-kriging are the optimal methods in most cases. Among the machine learning tested algorithms, the best performance is associated with Support Vector Machines and Random Forests methods. The geographically weighted regression is also among the optimum methods for pH and calcium carbonates spatial prediction. Good predictions were achieved for pH (R.sup.2 of 0.417-0.469, depending on the method), organic carbon (R.sup.2 of 0.302-0.443), calcium carbonates (R.sup.2 of 0.300-0.330) and moderate predictions for electric conductivity, total nitrogen, silt and sand (R.sup.2 of 0.155-0.331), while the lowest prediction characterizes the phosphorous content (R.sup.2 of 0.015-0.044). LUCAS proved to be a reliable and useful soil database and the achieved spatial distributions of soil properties can be further used for national and regional soil studies.</abstract><cop>San Francisco</cop><pub>Public Library of Science</pub><pmid>37611038</pmid><doi>10.1371/journal.pone.0289286</doi><tpages>e0289286</tpages><orcidid>https://orcid.org/0000-0003-3368-6662</orcidid><orcidid>https://orcid.org/0000-0003-0923-0358</orcidid><orcidid>https://orcid.org/0000-0003-4970-0860</orcidid><oa>free_for_read</oa></addata></record>
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subjects Agriculture
Algorithms
Analysis
Biology and Life Sciences
Calcium carbonate
Carbon
Carbonates
Chemical properties
Climate change
Computer and Information Sciences
Data mining
Digital Elevation Models
Digital mapping
Digital maps
Earth Sciences
Ecology and Environmental Sciences
Electric properties
Electrical conductivity
Electrical resistivity
Geographic information systems
Geology
Geostatistics
Interpolation
Kriging interpolation
Land use
Learning algorithms
Machine learning
Mapping
Methods
Mountains
Neural networks
Normalized difference vegetative index
Optimization
Organic carbon
People and Places
pH effects
Physical Sciences
Precipitation
Predictions
Properties
Regression
Regression analysis
Research and Analysis Methods
Sand
Silt
Software
Soil mapping
Soil maps
Soil profiles
Soil properties
Soil sciences
Spatial distribution
Statistical analysis
Statistical methods
Support vector machines
Taxonomy
Topsoil
Vegetation index
Wetness index
title Spatial modelling of topsoil properties in Romania using geostatistical methods and machine learning
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