Spatial modelling of topsoil properties in Romania using geostatistical methods and machine learning
Various research topics from the field of soil science or agriculture require digital maps of soil properties as input data. Such maps can be achieved by digital soil mapping (DSM) techniques which have developed consistently during the last decades. Our research focuses on the application of geosta...
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description | Various research topics from the field of soil science or agriculture require digital maps of soil properties as input data. Such maps can be achieved by digital soil mapping (DSM) techniques which have developed consistently during the last decades. Our research focuses on the application of geostatistical methods (including ordinary kriging, regression-kriging and geographically weighted regression) and machine learning algorithms to produce high resolution digital maps of topsoil properties in Romania. Six continuous predictors were considered in our study (digital elevation model, topographic wetness index, normalized difference vegetation index, slope, latitude and longitude). A tolerance test was performed to ensure that all predictors can be used for the purpose of digital soil mapping. The input soil data was extracted from the LUCAS database and includes 7 chemical properties (pH, electrical conductivity, calcium carbonate, organic carbon, N, P, K) and the particle-size fractions (sand, silt, clay). The spatial autocorrelation is higher for pH, organic carbon and calcium carbonate, as indicated by the partial sill / nugget ratio of semivariograms, meaning that these properties are more predictable than the others by kriging interpolation. The optimal DSM method was selected by independent sample validation, using resampled statistics from 100 samples randomly extracted from the validation dataset. Also, an additional independent sample of soil profiles, comprising legacy soil data, and the 200k Romania soil map were used for a supplementary validation. The results show that machine learning and regression-kriging are the optimal methods in most cases. Among the machine learning tested algorithms, the best performance is associated with Support Vector Machines and Random Forests methods. The geographically weighted regression is also among the optimum methods for pH and calcium carbonates spatial prediction. Good predictions were achieved for pH (R.sup.2 of 0.417-0.469, depending on the method), organic carbon (R.sup.2 of 0.302-0.443), calcium carbonates (R.sup.2 of 0.300-0.330) and moderate predictions for electric conductivity, total nitrogen, silt and sand (R.sup.2 of 0.155-0.331), while the lowest prediction characterizes the phosphorous content (R.sup.2 of 0.015-0.044). LUCAS proved to be a reliable and useful soil database and the achieved spatial distributions of soil properties can be further used for national and regional soil studies. |
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Such maps can be achieved by digital soil mapping (DSM) techniques which have developed consistently during the last decades. Our research focuses on the application of geostatistical methods (including ordinary kriging, regression-kriging and geographically weighted regression) and machine learning algorithms to produce high resolution digital maps of topsoil properties in Romania. Six continuous predictors were considered in our study (digital elevation model, topographic wetness index, normalized difference vegetation index, slope, latitude and longitude). A tolerance test was performed to ensure that all predictors can be used for the purpose of digital soil mapping. The input soil data was extracted from the LUCAS database and includes 7 chemical properties (pH, electrical conductivity, calcium carbonate, organic carbon, N, P, K) and the particle-size fractions (sand, silt, clay). The spatial autocorrelation is higher for pH, organic carbon and calcium carbonate, as indicated by the partial sill / nugget ratio of semivariograms, meaning that these properties are more predictable than the others by kriging interpolation. The optimal DSM method was selected by independent sample validation, using resampled statistics from 100 samples randomly extracted from the validation dataset. Also, an additional independent sample of soil profiles, comprising legacy soil data, and the 200k Romania soil map were used for a supplementary validation. The results show that machine learning and regression-kriging are the optimal methods in most cases. Among the machine learning tested algorithms, the best performance is associated with Support Vector Machines and Random Forests methods. The geographically weighted regression is also among the optimum methods for pH and calcium carbonates spatial prediction. Good predictions were achieved for pH (R.sup.2 of 0.417-0.469, depending on the method), organic carbon (R.sup.2 of 0.302-0.443), calcium carbonates (R.sup.2 of 0.300-0.330) and moderate predictions for electric conductivity, total nitrogen, silt and sand (R.sup.2 of 0.155-0.331), while the lowest prediction characterizes the phosphorous content (R.sup.2 of 0.015-0.044). LUCAS proved to be a reliable and useful soil database and the achieved spatial distributions of soil properties can be further used for national and regional soil studies.</description><identifier>ISSN: 1932-6203</identifier><identifier>EISSN: 1932-6203</identifier><identifier>DOI: 10.1371/journal.pone.0289286</identifier><identifier>PMID: 37611038</identifier><language>eng</language><publisher>San Francisco: Public Library of Science</publisher><subject>Agriculture ; Algorithms ; Analysis ; Biology and Life Sciences ; Calcium carbonate ; Carbon ; Carbonates ; Chemical properties ; Climate change ; Computer and Information Sciences ; Data mining ; Digital Elevation Models ; Digital mapping ; Digital maps ; Earth Sciences ; Ecology and Environmental Sciences ; Electric properties ; Electrical conductivity ; Electrical resistivity ; Geographic information systems ; Geology ; Geostatistics ; Interpolation ; Kriging interpolation ; Land use ; Learning algorithms ; Machine learning ; Mapping ; Methods ; Mountains ; Neural networks ; Normalized difference vegetative index ; Optimization ; Organic carbon ; People and Places ; pH effects ; Physical Sciences ; Precipitation ; Predictions ; Properties ; Regression ; Regression analysis ; Research and Analysis Methods ; Sand ; Silt ; Software ; Soil mapping ; Soil maps ; Soil profiles ; Soil properties ; Soil sciences ; Spatial distribution ; Statistical analysis ; Statistical methods ; Support vector machines ; Taxonomy ; Topsoil ; Vegetation index ; Wetness index</subject><ispartof>PloS one, 2023-08, Vol.18 (8), p.e0289286-e0289286</ispartof><rights>COPYRIGHT 2023 Public Library of Science</rights><rights>2023 Patriche et al. This is an open access article distributed under the terms of the Creative Commons Attribution License: http://creativecommons.org/licenses/by/4.0/ (the “License”), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License.</rights><rights>2023 Patriche et al 2023 Patriche et al</rights><rights>2023 Patriche et al. This is an open access article distributed under the terms of the Creative Commons Attribution License: http://creativecommons.org/licenses/by/4.0/ (the “License”), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License.</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c670t-105410b0b132bc82ec8c05be0b7e7a5f1bb8efb30665c0b970f4357a3ce158423</citedby><cites>FETCH-LOGICAL-c670t-105410b0b132bc82ec8c05be0b7e7a5f1bb8efb30665c0b970f4357a3ce158423</cites><orcidid>0000-0003-3368-6662 ; 0000-0003-0923-0358 ; 0000-0003-4970-0860</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC10446225/pdf/$$EPDF$$P50$$Gpubmedcentral$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC10446225/$$EHTML$$P50$$Gpubmedcentral$$Hfree_for_read</linktohtml><link.rule.ids>230,314,724,777,781,861,882,2096,2915,23847,27905,27906,53772,53774,79349,79350</link.rule.ids></links><search><contributor>Sanusi, Mohamad Syazwan Mohd</contributor><creatorcontrib>Patriche, Cristian Valeriu</creatorcontrib><creatorcontrib>Rosca, Bogdan</creatorcontrib><creatorcontrib>Pîrnau, Radu Gabriel</creatorcontrib><creatorcontrib>Vasiliniuc, Ionut</creatorcontrib><title>Spatial modelling of topsoil properties in Romania using geostatistical methods and machine learning</title><title>PloS one</title><description>Various research topics from the field of soil science or agriculture require digital maps of soil properties as input data. Such maps can be achieved by digital soil mapping (DSM) techniques which have developed consistently during the last decades. Our research focuses on the application of geostatistical methods (including ordinary kriging, regression-kriging and geographically weighted regression) and machine learning algorithms to produce high resolution digital maps of topsoil properties in Romania. Six continuous predictors were considered in our study (digital elevation model, topographic wetness index, normalized difference vegetation index, slope, latitude and longitude). A tolerance test was performed to ensure that all predictors can be used for the purpose of digital soil mapping. The input soil data was extracted from the LUCAS database and includes 7 chemical properties (pH, electrical conductivity, calcium carbonate, organic carbon, N, P, K) and the particle-size fractions (sand, silt, clay). The spatial autocorrelation is higher for pH, organic carbon and calcium carbonate, as indicated by the partial sill / nugget ratio of semivariograms, meaning that these properties are more predictable than the others by kriging interpolation. The optimal DSM method was selected by independent sample validation, using resampled statistics from 100 samples randomly extracted from the validation dataset. Also, an additional independent sample of soil profiles, comprising legacy soil data, and the 200k Romania soil map were used for a supplementary validation. The results show that machine learning and regression-kriging are the optimal methods in most cases. Among the machine learning tested algorithms, the best performance is associated with Support Vector Machines and Random Forests methods. The geographically weighted regression is also among the optimum methods for pH and calcium carbonates spatial prediction. Good predictions were achieved for pH (R.sup.2 of 0.417-0.469, depending on the method), organic carbon (R.sup.2 of 0.302-0.443), calcium carbonates (R.sup.2 of 0.300-0.330) and moderate predictions for electric conductivity, total nitrogen, silt and sand (R.sup.2 of 0.155-0.331), while the lowest prediction characterizes the phosphorous content (R.sup.2 of 0.015-0.044). LUCAS proved to be a reliable and useful soil database and the achieved spatial distributions of soil properties can be further used for national and regional soil studies.</description><subject>Agriculture</subject><subject>Algorithms</subject><subject>Analysis</subject><subject>Biology and Life Sciences</subject><subject>Calcium carbonate</subject><subject>Carbon</subject><subject>Carbonates</subject><subject>Chemical properties</subject><subject>Climate change</subject><subject>Computer and Information Sciences</subject><subject>Data mining</subject><subject>Digital Elevation Models</subject><subject>Digital mapping</subject><subject>Digital maps</subject><subject>Earth Sciences</subject><subject>Ecology and Environmental Sciences</subject><subject>Electric properties</subject><subject>Electrical conductivity</subject><subject>Electrical resistivity</subject><subject>Geographic information systems</subject><subject>Geology</subject><subject>Geostatistics</subject><subject>Interpolation</subject><subject>Kriging interpolation</subject><subject>Land use</subject><subject>Learning algorithms</subject><subject>Machine learning</subject><subject>Mapping</subject><subject>Methods</subject><subject>Mountains</subject><subject>Neural networks</subject><subject>Normalized difference vegetative index</subject><subject>Optimization</subject><subject>Organic carbon</subject><subject>People and Places</subject><subject>pH effects</subject><subject>Physical Sciences</subject><subject>Precipitation</subject><subject>Predictions</subject><subject>Properties</subject><subject>Regression</subject><subject>Regression analysis</subject><subject>Research and Analysis Methods</subject><subject>Sand</subject><subject>Silt</subject><subject>Software</subject><subject>Soil mapping</subject><subject>Soil maps</subject><subject>Soil profiles</subject><subject>Soil properties</subject><subject>Soil sciences</subject><subject>Spatial distribution</subject><subject>Statistical analysis</subject><subject>Statistical methods</subject><subject>Support vector machines</subject><subject>Taxonomy</subject><subject>Topsoil</subject><subject>Vegetation index</subject><subject>Wetness 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modelling of topsoil properties in Romania using geostatistical methods and machine learning</title><author>Patriche, Cristian Valeriu ; Rosca, Bogdan ; Pîrnau, Radu Gabriel ; Vasiliniuc, Ionut</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c670t-105410b0b132bc82ec8c05be0b7e7a5f1bb8efb30665c0b970f4357a3ce158423</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2023</creationdate><topic>Agriculture</topic><topic>Algorithms</topic><topic>Analysis</topic><topic>Biology and Life Sciences</topic><topic>Calcium carbonate</topic><topic>Carbon</topic><topic>Carbonates</topic><topic>Chemical properties</topic><topic>Climate change</topic><topic>Computer and Information Sciences</topic><topic>Data mining</topic><topic>Digital Elevation Models</topic><topic>Digital mapping</topic><topic>Digital maps</topic><topic>Earth Sciences</topic><topic>Ecology and Environmental Sciences</topic><topic>Electric 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sciences</topic><topic>Spatial distribution</topic><topic>Statistical analysis</topic><topic>Statistical methods</topic><topic>Support vector machines</topic><topic>Taxonomy</topic><topic>Topsoil</topic><topic>Vegetation index</topic><topic>Wetness index</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Patriche, Cristian Valeriu</creatorcontrib><creatorcontrib>Rosca, Bogdan</creatorcontrib><creatorcontrib>Pîrnau, Radu Gabriel</creatorcontrib><creatorcontrib>Vasiliniuc, Ionut</creatorcontrib><collection>CrossRef</collection><collection>Gale In Context: Opposing Viewpoints</collection><collection>Gale In Context: Science</collection><collection>ProQuest Central (Corporate)</collection><collection>Animal Behavior Abstracts</collection><collection>Bacteriology Abstracts (Microbiology B)</collection><collection>Biotechnology Research Abstracts</collection><collection>Nursing & Allied Health Database</collection><collection>Ecology 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one</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Patriche, Cristian Valeriu</au><au>Rosca, Bogdan</au><au>Pîrnau, Radu Gabriel</au><au>Vasiliniuc, Ionut</au><au>Sanusi, Mohamad Syazwan Mohd</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Spatial modelling of topsoil properties in Romania using geostatistical methods and machine learning</atitle><jtitle>PloS one</jtitle><date>2023-08-23</date><risdate>2023</risdate><volume>18</volume><issue>8</issue><spage>e0289286</spage><epage>e0289286</epage><pages>e0289286-e0289286</pages><issn>1932-6203</issn><eissn>1932-6203</eissn><abstract>Various research topics from the field of soil science or agriculture require digital maps of soil properties as input data. Such maps can be achieved by digital soil mapping (DSM) techniques which have developed consistently during the last decades. Our research focuses on the application of geostatistical methods (including ordinary kriging, regression-kriging and geographically weighted regression) and machine learning algorithms to produce high resolution digital maps of topsoil properties in Romania. Six continuous predictors were considered in our study (digital elevation model, topographic wetness index, normalized difference vegetation index, slope, latitude and longitude). A tolerance test was performed to ensure that all predictors can be used for the purpose of digital soil mapping. The input soil data was extracted from the LUCAS database and includes 7 chemical properties (pH, electrical conductivity, calcium carbonate, organic carbon, N, P, K) and the particle-size fractions (sand, silt, clay). The spatial autocorrelation is higher for pH, organic carbon and calcium carbonate, as indicated by the partial sill / nugget ratio of semivariograms, meaning that these properties are more predictable than the others by kriging interpolation. The optimal DSM method was selected by independent sample validation, using resampled statistics from 100 samples randomly extracted from the validation dataset. Also, an additional independent sample of soil profiles, comprising legacy soil data, and the 200k Romania soil map were used for a supplementary validation. The results show that machine learning and regression-kriging are the optimal methods in most cases. Among the machine learning tested algorithms, the best performance is associated with Support Vector Machines and Random Forests methods. The geographically weighted regression is also among the optimum methods for pH and calcium carbonates spatial prediction. Good predictions were achieved for pH (R.sup.2 of 0.417-0.469, depending on the method), organic carbon (R.sup.2 of 0.302-0.443), calcium carbonates (R.sup.2 of 0.300-0.330) and moderate predictions for electric conductivity, total nitrogen, silt and sand (R.sup.2 of 0.155-0.331), while the lowest prediction characterizes the phosphorous content (R.sup.2 of 0.015-0.044). LUCAS proved to be a reliable and useful soil database and the achieved spatial distributions of soil properties can be further used for national and regional soil studies.</abstract><cop>San Francisco</cop><pub>Public Library of Science</pub><pmid>37611038</pmid><doi>10.1371/journal.pone.0289286</doi><tpages>e0289286</tpages><orcidid>https://orcid.org/0000-0003-3368-6662</orcidid><orcidid>https://orcid.org/0000-0003-0923-0358</orcidid><orcidid>https://orcid.org/0000-0003-4970-0860</orcidid><oa>free_for_read</oa></addata></record> |
fulltext | fulltext |
identifier | ISSN: 1932-6203 |
ispartof | PloS one, 2023-08, Vol.18 (8), p.e0289286-e0289286 |
issn | 1932-6203 1932-6203 |
language | eng |
recordid | cdi_plos_journals_2856287489 |
source | DOAJ Directory of Open Access Journals; Elektronische Zeitschriftenbibliothek - Frei zugängliche E-Journals; Public Library of Science (PLoS); PubMed Central; Free Full-Text Journals in Chemistry |
subjects | Agriculture Algorithms Analysis Biology and Life Sciences Calcium carbonate Carbon Carbonates Chemical properties Climate change Computer and Information Sciences Data mining Digital Elevation Models Digital mapping Digital maps Earth Sciences Ecology and Environmental Sciences Electric properties Electrical conductivity Electrical resistivity Geographic information systems Geology Geostatistics Interpolation Kriging interpolation Land use Learning algorithms Machine learning Mapping Methods Mountains Neural networks Normalized difference vegetative index Optimization Organic carbon People and Places pH effects Physical Sciences Precipitation Predictions Properties Regression Regression analysis Research and Analysis Methods Sand Silt Software Soil mapping Soil maps Soil profiles Soil properties Soil sciences Spatial distribution Statistical analysis Statistical methods Support vector machines Taxonomy Topsoil Vegetation index Wetness index |
title | Spatial modelling of topsoil properties in Romania using geostatistical methods and machine learning |
url | https://sfx.bib-bvb.de/sfx_tum?ctx_ver=Z39.88-2004&ctx_enc=info:ofi/enc:UTF-8&ctx_tim=2025-01-19T14%3A18%3A28IST&url_ver=Z39.88-2004&url_ctx_fmt=infofi/fmt:kev:mtx:ctx&rfr_id=info:sid/primo.exlibrisgroup.com:primo3-Article-gale_plos_&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.genre=article&rft.atitle=Spatial%20modelling%20of%20topsoil%20properties%20in%20Romania%20using%20geostatistical%20methods%20and%20machine%20learning&rft.jtitle=PloS%20one&rft.au=Patriche,%20Cristian%20Valeriu&rft.date=2023-08-23&rft.volume=18&rft.issue=8&rft.spage=e0289286&rft.epage=e0289286&rft.pages=e0289286-e0289286&rft.issn=1932-6203&rft.eissn=1932-6203&rft_id=info:doi/10.1371/journal.pone.0289286&rft_dat=%3Cgale_plos_%3EA761918458%3C/gale_plos_%3E%3Curl%3E%3C/url%3E&disable_directlink=true&sfx.directlink=off&sfx.report_link=0&rft_id=info:oai/&rft_pqid=2856287489&rft_id=info:pmid/37611038&rft_galeid=A761918458&rft_doaj_id=oai_doaj_org_article_472c7f3d86994f24b78e24e1e9088454&rfr_iscdi=true |