Theoretical efficiency limits and speed-efficiency trade-off in myosin motors
Muscle myosin is a non-processive molecular motor that generates mechanical work when cooperating in large ensembles. During its cyle, each individual motor keeps attaching and detaching from the actin filament. The random nature of attachment and detachment inevitably leads to losses and imposes th...
Gespeichert in:
Veröffentlicht in: | PLoS computational biology 2023-07, Vol.19 (7), p.e1011310-e1011310 |
---|---|
Hauptverfasser: | , |
Format: | Artikel |
Sprache: | eng |
Schlagworte: | |
Online-Zugang: | Volltext |
Tags: |
Tag hinzufügen
Keine Tags, Fügen Sie den ersten Tag hinzu!
|
container_end_page | e1011310 |
---|---|
container_issue | 7 |
container_start_page | e1011310 |
container_title | PLoS computational biology |
container_volume | 19 |
creator | Vilfan, Andrej Šarlah, Andreja |
description | Muscle myosin is a non-processive molecular motor that generates mechanical work when cooperating in large ensembles. During its cyle, each individual motor keeps attaching and detaching from the actin filament. The random nature of attachment and detachment inevitably leads to losses and imposes theoretical limits on the energetic efficiency. Here, we numerically determine the theoretical efficiency limit of a classical myosin model with a given number of mechano-chemical states. All parameters that are not bounded by physical limits (like rate limiting steps) are determined by numerical efficiency optimization. We show that the efficiency is limited by the number of states, the stiffness and the rate-limiting kinetic steps. There is a trade-off between speed and efficiency. Slow motors are optimal when most of the available free energy is allocated to the working stroke and the stiffness of their elastic element is high. Fast motors, on the other hand, work better with a lower and asymmetric stiffness and allocate a larger fraction of free energy to the release of ADP. Overall, many features found in myosins coincide with the findings from the model optimization: there are at least 3 bound states, the largest part of the working stroke takes place during the first transition, the ADP affinity is adapted differently in slow and fast myosins and there is an asymmetry in elastic elements. |
doi_str_mv | 10.1371/journal.pcbi.1011310 |
format | Article |
fullrecord | <record><control><sourceid>gale_plos_</sourceid><recordid>TN_cdi_plos_journals_2851970650</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><galeid>A759346776</galeid><sourcerecordid>A759346776</sourcerecordid><originalsourceid>FETCH-LOGICAL-c545t-7f2821feb235b707e015dcb414acaa91ff5fbdd1ab71cd9ab5b900881fd90eda3</originalsourceid><addsrcrecordid>eNqVkk1v1DAQhiMEoqXwDxBE4gKHLJ44XtsnVFV8VCogQTlbjj3eukrirZ0g9t_jqGm1i3pBPozleead8egtipdAVkA5vL8OUxx0t9qa1q-AAFAgj4pjYIxWnDLxeO9-VDxL6ZqQfJXrp8UR5Q0XwMRx8fXyCkPE0RvdleicNx4Hsys73_sxlXqwZdoi2movN0ZtsQrOlX4o-11IcwhjiOl58cTpLuGLJZ4Uvz59vDz7Ul18_3x-dnpRGdawseKuFjU4bGvKWk44EmDWtA002mgtwTnmWmtBtxyMlbplrSRECHBWErSanhSvb3W3XUhq2URStWAgOVkzkokPCzG1PVqDQ566U9voex13KmivDjODv1Kb8FsBoZJJIrLC20UhhpsJ06h6nwx2nR4wTHOzBkjNRdNk9M0_6MMjLdRGd6j84EJubGZRdcqZpM2a83WmVg9Q-VjsvQkDOp_fDwreHRRkZsQ_40ZPKanznz_-g_12yDa3rIkhpYjufnlA1OzAu0-q2YFqcWAue7W_-PuiO8vRv0A82BI</addsrcrecordid><sourcetype>Open Website</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype><pqid>2851970650</pqid></control><display><type>article</type><title>Theoretical efficiency limits and speed-efficiency trade-off in myosin motors</title><source>MEDLINE</source><source>DOAJ Directory of Open Access Journals</source><source>Public Library of Science (PLoS) Journals Open Access</source><source>EZB-FREE-00999 freely available EZB journals</source><source>PubMed Central</source><creator>Vilfan, Andrej ; Šarlah, Andreja</creator><contributor>Klumpp, Stefan</contributor><creatorcontrib>Vilfan, Andrej ; Šarlah, Andreja ; Klumpp, Stefan</creatorcontrib><description>Muscle myosin is a non-processive molecular motor that generates mechanical work when cooperating in large ensembles. During its cyle, each individual motor keeps attaching and detaching from the actin filament. The random nature of attachment and detachment inevitably leads to losses and imposes theoretical limits on the energetic efficiency. Here, we numerically determine the theoretical efficiency limit of a classical myosin model with a given number of mechano-chemical states. All parameters that are not bounded by physical limits (like rate limiting steps) are determined by numerical efficiency optimization. We show that the efficiency is limited by the number of states, the stiffness and the rate-limiting kinetic steps. There is a trade-off between speed and efficiency. Slow motors are optimal when most of the available free energy is allocated to the working stroke and the stiffness of their elastic element is high. Fast motors, on the other hand, work better with a lower and asymmetric stiffness and allocate a larger fraction of free energy to the release of ADP. Overall, many features found in myosins coincide with the findings from the model optimization: there are at least 3 bound states, the largest part of the working stroke takes place during the first transition, the ADP affinity is adapted differently in slow and fast myosins and there is an asymmetry in elastic elements.</description><identifier>ISSN: 1553-7358</identifier><identifier>ISSN: 1553-734X</identifier><identifier>EISSN: 1553-7358</identifier><identifier>DOI: 10.1371/journal.pcbi.1011310</identifier><identifier>PMID: 37478158</identifier><language>eng</language><publisher>United States: Public Library of Science</publisher><subject>Actin ; Actin Cytoskeleton - chemistry ; Actins - metabolism ; Analysis ; Asymmetry ; Binding sites ; Biology and Life Sciences ; Cell division ; Constraining ; Efficiency ; Energy ; Engineering and Technology ; Free energy ; Kinetics ; Mathematical models ; Mechanical properties ; Molecular motors ; Muscle proteins ; Muscles - metabolism ; Myosin ; Myosins - chemistry ; Optimization ; Physical Sciences ; Physiological aspects ; Probability ; Proteins ; Stiffness ; Tradeoffs ; Velocity</subject><ispartof>PLoS computational biology, 2023-07, Vol.19 (7), p.e1011310-e1011310</ispartof><rights>Copyright: © 2023 Vilfan, Šarlah. This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.</rights><rights>COPYRIGHT 2023 Public Library of Science</rights><rights>2023 Vilfan, Šarlah. This is an open access article distributed under the terms of the Creative Commons Attribution License: http://creativecommons.org/licenses/by/4.0/ (the “License”), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License.</rights><rights>2023 Vilfan, Šarlah 2023 Vilfan, Šarlah</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><cites>FETCH-LOGICAL-c545t-7f2821feb235b707e015dcb414acaa91ff5fbdd1ab71cd9ab5b900881fd90eda3</cites><orcidid>0000-0003-4913-4811 ; 0000-0001-8985-6072</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC10395908/pdf/$$EPDF$$P50$$Gpubmedcentral$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC10395908/$$EHTML$$P50$$Gpubmedcentral$$Hfree_for_read</linktohtml><link.rule.ids>230,315,728,781,785,865,886,2929,23871,27929,27930,53796,53798</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/37478158$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><contributor>Klumpp, Stefan</contributor><creatorcontrib>Vilfan, Andrej</creatorcontrib><creatorcontrib>Šarlah, Andreja</creatorcontrib><title>Theoretical efficiency limits and speed-efficiency trade-off in myosin motors</title><title>PLoS computational biology</title><addtitle>PLoS Comput Biol</addtitle><description>Muscle myosin is a non-processive molecular motor that generates mechanical work when cooperating in large ensembles. During its cyle, each individual motor keeps attaching and detaching from the actin filament. The random nature of attachment and detachment inevitably leads to losses and imposes theoretical limits on the energetic efficiency. Here, we numerically determine the theoretical efficiency limit of a classical myosin model with a given number of mechano-chemical states. All parameters that are not bounded by physical limits (like rate limiting steps) are determined by numerical efficiency optimization. We show that the efficiency is limited by the number of states, the stiffness and the rate-limiting kinetic steps. There is a trade-off between speed and efficiency. Slow motors are optimal when most of the available free energy is allocated to the working stroke and the stiffness of their elastic element is high. Fast motors, on the other hand, work better with a lower and asymmetric stiffness and allocate a larger fraction of free energy to the release of ADP. Overall, many features found in myosins coincide with the findings from the model optimization: there are at least 3 bound states, the largest part of the working stroke takes place during the first transition, the ADP affinity is adapted differently in slow and fast myosins and there is an asymmetry in elastic elements.</description><subject>Actin</subject><subject>Actin Cytoskeleton - chemistry</subject><subject>Actins - metabolism</subject><subject>Analysis</subject><subject>Asymmetry</subject><subject>Binding sites</subject><subject>Biology and Life Sciences</subject><subject>Cell division</subject><subject>Constraining</subject><subject>Efficiency</subject><subject>Energy</subject><subject>Engineering and Technology</subject><subject>Free energy</subject><subject>Kinetics</subject><subject>Mathematical models</subject><subject>Mechanical properties</subject><subject>Molecular motors</subject><subject>Muscle proteins</subject><subject>Muscles - metabolism</subject><subject>Myosin</subject><subject>Myosins - chemistry</subject><subject>Optimization</subject><subject>Physical Sciences</subject><subject>Physiological aspects</subject><subject>Probability</subject><subject>Proteins</subject><subject>Stiffness</subject><subject>Tradeoffs</subject><subject>Velocity</subject><issn>1553-7358</issn><issn>1553-734X</issn><issn>1553-7358</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2023</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><sourceid>ABUWG</sourceid><sourceid>AFKRA</sourceid><sourceid>AZQEC</sourceid><sourceid>BENPR</sourceid><sourceid>CCPQU</sourceid><sourceid>DWQXO</sourceid><sourceid>GNUQQ</sourceid><recordid>eNqVkk1v1DAQhiMEoqXwDxBE4gKHLJ44XtsnVFV8VCogQTlbjj3eukrirZ0g9t_jqGm1i3pBPozleead8egtipdAVkA5vL8OUxx0t9qa1q-AAFAgj4pjYIxWnDLxeO9-VDxL6ZqQfJXrp8UR5Q0XwMRx8fXyCkPE0RvdleicNx4Hsys73_sxlXqwZdoi2movN0ZtsQrOlX4o-11IcwhjiOl58cTpLuGLJZ4Uvz59vDz7Ul18_3x-dnpRGdawseKuFjU4bGvKWk44EmDWtA002mgtwTnmWmtBtxyMlbplrSRECHBWErSanhSvb3W3XUhq2URStWAgOVkzkokPCzG1PVqDQ566U9voex13KmivDjODv1Kb8FsBoZJJIrLC20UhhpsJ06h6nwx2nR4wTHOzBkjNRdNk9M0_6MMjLdRGd6j84EJubGZRdcqZpM2a83WmVg9Q-VjsvQkDOp_fDwreHRRkZsQ_40ZPKanznz_-g_12yDa3rIkhpYjufnlA1OzAu0-q2YFqcWAue7W_-PuiO8vRv0A82BI</recordid><startdate>20230721</startdate><enddate>20230721</enddate><creator>Vilfan, Andrej</creator><creator>Šarlah, Andreja</creator><general>Public Library of Science</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>ISN</scope><scope>ISR</scope><scope>3V.</scope><scope>7QO</scope><scope>7QP</scope><scope>7TK</scope><scope>7TM</scope><scope>7X7</scope><scope>7XB</scope><scope>88E</scope><scope>8AL</scope><scope>8FD</scope><scope>8FE</scope><scope>8FG</scope><scope>8FH</scope><scope>8FI</scope><scope>8FJ</scope><scope>8FK</scope><scope>ABUWG</scope><scope>AFKRA</scope><scope>ARAPS</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BGLVJ</scope><scope>BHPHI</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FR3</scope><scope>FYUFA</scope><scope>GHDGH</scope><scope>GNUQQ</scope><scope>HCIFZ</scope><scope>JQ2</scope><scope>K7-</scope><scope>K9.</scope><scope>LK8</scope><scope>M0N</scope><scope>M0S</scope><scope>M1P</scope><scope>M7P</scope><scope>P5Z</scope><scope>P62</scope><scope>P64</scope><scope>PIMPY</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>Q9U</scope><scope>RC3</scope><scope>7X8</scope><scope>5PM</scope><orcidid>https://orcid.org/0000-0003-4913-4811</orcidid><orcidid>https://orcid.org/0000-0001-8985-6072</orcidid></search><sort><creationdate>20230721</creationdate><title>Theoretical efficiency limits and speed-efficiency trade-off in myosin motors</title><author>Vilfan, Andrej ; Šarlah, Andreja</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c545t-7f2821feb235b707e015dcb414acaa91ff5fbdd1ab71cd9ab5b900881fd90eda3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2023</creationdate><topic>Actin</topic><topic>Actin Cytoskeleton - chemistry</topic><topic>Actins - metabolism</topic><topic>Analysis</topic><topic>Asymmetry</topic><topic>Binding sites</topic><topic>Biology and Life Sciences</topic><topic>Cell division</topic><topic>Constraining</topic><topic>Efficiency</topic><topic>Energy</topic><topic>Engineering and Technology</topic><topic>Free energy</topic><topic>Kinetics</topic><topic>Mathematical models</topic><topic>Mechanical properties</topic><topic>Molecular motors</topic><topic>Muscle proteins</topic><topic>Muscles - metabolism</topic><topic>Myosin</topic><topic>Myosins - chemistry</topic><topic>Optimization</topic><topic>Physical Sciences</topic><topic>Physiological aspects</topic><topic>Probability</topic><topic>Proteins</topic><topic>Stiffness</topic><topic>Tradeoffs</topic><topic>Velocity</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Vilfan, Andrej</creatorcontrib><creatorcontrib>Šarlah, Andreja</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Gale In Context: Canada</collection><collection>Gale In Context: Science</collection><collection>ProQuest Central (Corporate)</collection><collection>Biotechnology Research Abstracts</collection><collection>Calcium & Calcified Tissue Abstracts</collection><collection>Neurosciences Abstracts</collection><collection>Nucleic Acids Abstracts</collection><collection>Health & Medical Collection</collection><collection>ProQuest Central (purchase pre-March 2016)</collection><collection>Medical Database (Alumni Edition)</collection><collection>Computing Database (Alumni Edition)</collection><collection>Technology Research Database</collection><collection>ProQuest SciTech Collection</collection><collection>ProQuest Technology Collection</collection><collection>ProQuest Natural Science Collection</collection><collection>Hospital Premium Collection</collection><collection>Hospital Premium Collection (Alumni Edition)</collection><collection>ProQuest Central (Alumni) (purchase pre-March 2016)</collection><collection>ProQuest Central (Alumni Edition)</collection><collection>ProQuest Central UK/Ireland</collection><collection>Advanced Technologies & Aerospace Collection</collection><collection>ProQuest Central Essentials</collection><collection>Biological Science Collection</collection><collection>ProQuest Central</collection><collection>Technology Collection (ProQuest)</collection><collection>Natural Science Collection (ProQuest)</collection><collection>ProQuest One Community College</collection><collection>ProQuest Central Korea</collection><collection>Engineering Research Database</collection><collection>Health Research Premium Collection</collection><collection>Health Research Premium Collection (Alumni)</collection><collection>ProQuest Central Student</collection><collection>SciTech Premium Collection</collection><collection>ProQuest Computer Science Collection</collection><collection>Computer Science Database</collection><collection>ProQuest Health & Medical Complete (Alumni)</collection><collection>ProQuest Biological Science Collection</collection><collection>Computing Database</collection><collection>Health & Medical Collection (Alumni Edition)</collection><collection>Medical Database</collection><collection>Biological Science Database</collection><collection>Advanced Technologies & Aerospace Database</collection><collection>ProQuest Advanced Technologies & Aerospace Collection</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Access via ProQuest (Open Access)</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>ProQuest Central Basic</collection><collection>Genetics Abstracts</collection><collection>MEDLINE - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><jtitle>PLoS computational biology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Vilfan, Andrej</au><au>Šarlah, Andreja</au><au>Klumpp, Stefan</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Theoretical efficiency limits and speed-efficiency trade-off in myosin motors</atitle><jtitle>PLoS computational biology</jtitle><addtitle>PLoS Comput Biol</addtitle><date>2023-07-21</date><risdate>2023</risdate><volume>19</volume><issue>7</issue><spage>e1011310</spage><epage>e1011310</epage><pages>e1011310-e1011310</pages><issn>1553-7358</issn><issn>1553-734X</issn><eissn>1553-7358</eissn><abstract>Muscle myosin is a non-processive molecular motor that generates mechanical work when cooperating in large ensembles. During its cyle, each individual motor keeps attaching and detaching from the actin filament. The random nature of attachment and detachment inevitably leads to losses and imposes theoretical limits on the energetic efficiency. Here, we numerically determine the theoretical efficiency limit of a classical myosin model with a given number of mechano-chemical states. All parameters that are not bounded by physical limits (like rate limiting steps) are determined by numerical efficiency optimization. We show that the efficiency is limited by the number of states, the stiffness and the rate-limiting kinetic steps. There is a trade-off between speed and efficiency. Slow motors are optimal when most of the available free energy is allocated to the working stroke and the stiffness of their elastic element is high. Fast motors, on the other hand, work better with a lower and asymmetric stiffness and allocate a larger fraction of free energy to the release of ADP. Overall, many features found in myosins coincide with the findings from the model optimization: there are at least 3 bound states, the largest part of the working stroke takes place during the first transition, the ADP affinity is adapted differently in slow and fast myosins and there is an asymmetry in elastic elements.</abstract><cop>United States</cop><pub>Public Library of Science</pub><pmid>37478158</pmid><doi>10.1371/journal.pcbi.1011310</doi><tpages>e1011310</tpages><orcidid>https://orcid.org/0000-0003-4913-4811</orcidid><orcidid>https://orcid.org/0000-0001-8985-6072</orcidid><oa>free_for_read</oa></addata></record> |
fulltext | fulltext |
identifier | ISSN: 1553-7358 |
ispartof | PLoS computational biology, 2023-07, Vol.19 (7), p.e1011310-e1011310 |
issn | 1553-7358 1553-734X 1553-7358 |
language | eng |
recordid | cdi_plos_journals_2851970650 |
source | MEDLINE; DOAJ Directory of Open Access Journals; Public Library of Science (PLoS) Journals Open Access; EZB-FREE-00999 freely available EZB journals; PubMed Central |
subjects | Actin Actin Cytoskeleton - chemistry Actins - metabolism Analysis Asymmetry Binding sites Biology and Life Sciences Cell division Constraining Efficiency Energy Engineering and Technology Free energy Kinetics Mathematical models Mechanical properties Molecular motors Muscle proteins Muscles - metabolism Myosin Myosins - chemistry Optimization Physical Sciences Physiological aspects Probability Proteins Stiffness Tradeoffs Velocity |
title | Theoretical efficiency limits and speed-efficiency trade-off in myosin motors |
url | https://sfx.bib-bvb.de/sfx_tum?ctx_ver=Z39.88-2004&ctx_enc=info:ofi/enc:UTF-8&ctx_tim=2024-12-12T07%3A59%3A10IST&url_ver=Z39.88-2004&url_ctx_fmt=infofi/fmt:kev:mtx:ctx&rfr_id=info:sid/primo.exlibrisgroup.com:primo3-Article-gale_plos_&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.genre=article&rft.atitle=Theoretical%20efficiency%20limits%20and%20speed-efficiency%20trade-off%20in%20myosin%20motors&rft.jtitle=PLoS%20computational%20biology&rft.au=Vilfan,%20Andrej&rft.date=2023-07-21&rft.volume=19&rft.issue=7&rft.spage=e1011310&rft.epage=e1011310&rft.pages=e1011310-e1011310&rft.issn=1553-7358&rft.eissn=1553-7358&rft_id=info:doi/10.1371/journal.pcbi.1011310&rft_dat=%3Cgale_plos_%3EA759346776%3C/gale_plos_%3E%3Curl%3E%3C/url%3E&disable_directlink=true&sfx.directlink=off&sfx.report_link=0&rft_id=info:oai/&rft_pqid=2851970650&rft_id=info:pmid/37478158&rft_galeid=A759346776&rfr_iscdi=true |