Machine learning analysis of the UK Biobank reveals IGF-1 and inflammatory biomarkers predict Parkinson's disease risk
Parkinson's disease (PD) is the most common movement disorder, and its prevalence is increasing rapidly worldwide with an ageing population. The UK Biobank is the world's largest and most comprehensive longitudinal study of ageing community volunteers. The cause of the common form of PD is...
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description | Parkinson's disease (PD) is the most common movement disorder, and its prevalence is increasing rapidly worldwide with an ageing population. The UK Biobank is the world's largest and most comprehensive longitudinal study of ageing community volunteers. The cause of the common form of PD is multifactorial, but the degree of causal heterogeneity among patients or the relative importance of one risk factor over another is unclear. This is a major impediment to the discovery of disease-modifying therapies.
We used an integrated machine learning algorithm (IDEARS) to explore the relative effects of 1,753 measured non-genetic variables in 334,062 eligible UK Biobank participants, including 2,719 who had developed PD since their recruitment into the study.
Male gender was the highest-ranked risk factor, followed by elevated serum insulin-like growth factor 1 (IGF-1), lymphocyte count, and neutrophil/lymphocyte ratio. A group of factors aligned with the symptoms of frailty also ranked highly. IGF-1 and neutrophil/lymphocyte ratio were also elevated in both sexes before PD diagnosis and at the point of diagnosis.
The use of machine learning with the UK Biobank provides the best opportunity to explore the multidimensional nature of PD. Our results suggest that novel risk biomarkers, including elevated IGF-1 and NLR, may play a role in, or are indicative of PD pathomechanisms. In particular, our results are consistent with PD being a central manifestation of a systemic inflammatory disease. These biomarkers may be used clinically to predict future PD risk, improve early diagnosis and provide new therapeutic avenues. |
doi_str_mv | 10.1371/journal.pone.0285416 |
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We used an integrated machine learning algorithm (IDEARS) to explore the relative effects of 1,753 measured non-genetic variables in 334,062 eligible UK Biobank participants, including 2,719 who had developed PD since their recruitment into the study.
Male gender was the highest-ranked risk factor, followed by elevated serum insulin-like growth factor 1 (IGF-1), lymphocyte count, and neutrophil/lymphocyte ratio. A group of factors aligned with the symptoms of frailty also ranked highly. IGF-1 and neutrophil/lymphocyte ratio were also elevated in both sexes before PD diagnosis and at the point of diagnosis.
The use of machine learning with the UK Biobank provides the best opportunity to explore the multidimensional nature of PD. Our results suggest that novel risk biomarkers, including elevated IGF-1 and NLR, may play a role in, or are indicative of PD pathomechanisms. In particular, our results are consistent with PD being a central manifestation of a systemic inflammatory disease. These biomarkers may be used clinically to predict future PD risk, improve early diagnosis and provide new therapeutic avenues.</description><identifier>ISSN: 1932-6203</identifier><identifier>EISSN: 1932-6203</identifier><identifier>DOI: 10.1371/journal.pone.0285416</identifier><identifier>PMID: 37159450</identifier><language>eng</language><publisher>United States: Public Library of Science</publisher><subject>Aging ; Algorithms ; Analysis ; Automation ; Biobanks ; Biological markers ; Biological Specimen Banks ; Biology and Life Sciences ; Biomarkers ; Cell number ; Codes ; Data mining ; Data processing ; Datasets ; Diagnosis ; Family medical history ; Female ; Gender ; Growth factors ; Health risks ; Heterogeneity ; Hospitals ; Humans ; Inflammatory diseases ; Insulin ; Insulin-Like Growth Factor I ; Insulin-like growth factors ; Learning algorithms ; Leukocytes (neutrophilic) ; Longitudinal Studies ; Lymphocytes ; Machine Learning ; Male ; Medical imaging ; Medical research ; Medicine and Health Sciences ; Medicine, Experimental ; Movement disorders ; Neurodegenerative diseases ; Neuroimaging ; Nonsteroidal anti-inflammatory drugs ; Parkinson Disease - diagnosis ; Parkinson Disease - epidemiology ; Parkinson's disease ; Parkinsons disease ; Pesticides ; Questionnaires ; Regression analysis ; Risk factors ; Signs and symptoms ; Survival analysis ; United Kingdom - epidemiology ; Variables</subject><ispartof>PloS one, 2023-05, Vol.18 (5), p.e0285416-e0285416</ispartof><rights>Copyright: © 2023 Allwright et al. This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.</rights><rights>COPYRIGHT 2023 Public Library of Science</rights><rights>2023 Allwright et al. This is an open access article distributed under the terms of the Creative Commons Attribution License: http://creativecommons.org/licenses/by/4.0/ (the “License”), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License.</rights><rights>2023 Allwright et al 2023 Allwright et al</rights><rights>2023 Allwright et al. This is an open access article distributed under the terms of the Creative Commons Attribution License: http://creativecommons.org/licenses/by/4.0/ (the “License”), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License.</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c693t-6d56290fee60ff240f1e6914ded0a06250920ec919410925328cad17630616463</citedby><cites>FETCH-LOGICAL-c693t-6d56290fee60ff240f1e6914ded0a06250920ec919410925328cad17630616463</cites><orcidid>0000-0002-9871-2588 ; 0000-0002-6357-818X</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC10168570/pdf/$$EPDF$$P50$$Gpubmedcentral$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC10168570/$$EHTML$$P50$$Gpubmedcentral$$Hfree_for_read</linktohtml><link.rule.ids>230,314,723,776,780,860,881,2096,2915,23845,27901,27902,53766,53768,79343,79344</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/37159450$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Allwright, Michael</creatorcontrib><creatorcontrib>Mundell, Hamish</creatorcontrib><creatorcontrib>Sutherland, Greg</creatorcontrib><creatorcontrib>Austin, Paul</creatorcontrib><creatorcontrib>Guennewig, Boris</creatorcontrib><title>Machine learning analysis of the UK Biobank reveals IGF-1 and inflammatory biomarkers predict Parkinson's disease risk</title><title>PloS one</title><addtitle>PLoS One</addtitle><description>Parkinson's disease (PD) is the most common movement disorder, and its prevalence is increasing rapidly worldwide with an ageing population. The UK Biobank is the world's largest and most comprehensive longitudinal study of ageing community volunteers. The cause of the common form of PD is multifactorial, but the degree of causal heterogeneity among patients or the relative importance of one risk factor over another is unclear. This is a major impediment to the discovery of disease-modifying therapies.
We used an integrated machine learning algorithm (IDEARS) to explore the relative effects of 1,753 measured non-genetic variables in 334,062 eligible UK Biobank participants, including 2,719 who had developed PD since their recruitment into the study.
Male gender was the highest-ranked risk factor, followed by elevated serum insulin-like growth factor 1 (IGF-1), lymphocyte count, and neutrophil/lymphocyte ratio. A group of factors aligned with the symptoms of frailty also ranked highly. IGF-1 and neutrophil/lymphocyte ratio were also elevated in both sexes before PD diagnosis and at the point of diagnosis.
The use of machine learning with the UK Biobank provides the best opportunity to explore the multidimensional nature of PD. Our results suggest that novel risk biomarkers, including elevated IGF-1 and NLR, may play a role in, or are indicative of PD pathomechanisms. In particular, our results are consistent with PD being a central manifestation of a systemic inflammatory disease. These biomarkers may be used clinically to predict future PD risk, improve early diagnosis and provide new therapeutic avenues.</description><subject>Aging</subject><subject>Algorithms</subject><subject>Analysis</subject><subject>Automation</subject><subject>Biobanks</subject><subject>Biological markers</subject><subject>Biological Specimen Banks</subject><subject>Biology and Life Sciences</subject><subject>Biomarkers</subject><subject>Cell number</subject><subject>Codes</subject><subject>Data mining</subject><subject>Data processing</subject><subject>Datasets</subject><subject>Diagnosis</subject><subject>Family medical history</subject><subject>Female</subject><subject>Gender</subject><subject>Growth factors</subject><subject>Health risks</subject><subject>Heterogeneity</subject><subject>Hospitals</subject><subject>Humans</subject><subject>Inflammatory diseases</subject><subject>Insulin</subject><subject>Insulin-Like Growth Factor I</subject><subject>Insulin-like growth factors</subject><subject>Learning algorithms</subject><subject>Leukocytes (neutrophilic)</subject><subject>Longitudinal Studies</subject><subject>Lymphocytes</subject><subject>Machine Learning</subject><subject>Male</subject><subject>Medical imaging</subject><subject>Medical research</subject><subject>Medicine and Health Sciences</subject><subject>Medicine, Experimental</subject><subject>Movement disorders</subject><subject>Neurodegenerative diseases</subject><subject>Neuroimaging</subject><subject>Nonsteroidal anti-inflammatory drugs</subject><subject>Parkinson Disease - diagnosis</subject><subject>Parkinson Disease - epidemiology</subject><subject>Parkinson's disease</subject><subject>Parkinsons disease</subject><subject>Pesticides</subject><subject>Questionnaires</subject><subject>Regression analysis</subject><subject>Risk factors</subject><subject>Signs and symptoms</subject><subject>Survival analysis</subject><subject>United Kingdom - 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learning analysis of the UK Biobank reveals IGF-1 and inflammatory biomarkers predict Parkinson's disease risk</title><author>Allwright, Michael ; Mundell, Hamish ; Sutherland, Greg ; Austin, Paul ; Guennewig, Boris</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c693t-6d56290fee60ff240f1e6914ded0a06250920ec919410925328cad17630616463</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2023</creationdate><topic>Aging</topic><topic>Algorithms</topic><topic>Analysis</topic><topic>Automation</topic><topic>Biobanks</topic><topic>Biological markers</topic><topic>Biological Specimen Banks</topic><topic>Biology and Life Sciences</topic><topic>Biomarkers</topic><topic>Cell number</topic><topic>Codes</topic><topic>Data mining</topic><topic>Data processing</topic><topic>Datasets</topic><topic>Diagnosis</topic><topic>Family medical history</topic><topic>Female</topic><topic>Gender</topic><topic>Growth 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Participant titles)</collection><collection>DOAJ Directory of Open Access Journals</collection><jtitle>PloS one</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Allwright, Michael</au><au>Mundell, Hamish</au><au>Sutherland, Greg</au><au>Austin, Paul</au><au>Guennewig, Boris</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Machine learning analysis of the UK Biobank reveals IGF-1 and inflammatory biomarkers predict Parkinson's disease risk</atitle><jtitle>PloS one</jtitle><addtitle>PLoS One</addtitle><date>2023-05-09</date><risdate>2023</risdate><volume>18</volume><issue>5</issue><spage>e0285416</spage><epage>e0285416</epage><pages>e0285416-e0285416</pages><issn>1932-6203</issn><eissn>1932-6203</eissn><abstract>Parkinson's disease (PD) is the most common movement disorder, and its prevalence is increasing rapidly worldwide with an ageing population. The UK Biobank is the world's largest and most comprehensive longitudinal study of ageing community volunteers. The cause of the common form of PD is multifactorial, but the degree of causal heterogeneity among patients or the relative importance of one risk factor over another is unclear. This is a major impediment to the discovery of disease-modifying therapies.
We used an integrated machine learning algorithm (IDEARS) to explore the relative effects of 1,753 measured non-genetic variables in 334,062 eligible UK Biobank participants, including 2,719 who had developed PD since their recruitment into the study.
Male gender was the highest-ranked risk factor, followed by elevated serum insulin-like growth factor 1 (IGF-1), lymphocyte count, and neutrophil/lymphocyte ratio. A group of factors aligned with the symptoms of frailty also ranked highly. IGF-1 and neutrophil/lymphocyte ratio were also elevated in both sexes before PD diagnosis and at the point of diagnosis.
The use of machine learning with the UK Biobank provides the best opportunity to explore the multidimensional nature of PD. Our results suggest that novel risk biomarkers, including elevated IGF-1 and NLR, may play a role in, or are indicative of PD pathomechanisms. In particular, our results are consistent with PD being a central manifestation of a systemic inflammatory disease. These biomarkers may be used clinically to predict future PD risk, improve early diagnosis and provide new therapeutic avenues.</abstract><cop>United States</cop><pub>Public Library of Science</pub><pmid>37159450</pmid><doi>10.1371/journal.pone.0285416</doi><tpages>e0285416</tpages><orcidid>https://orcid.org/0000-0002-9871-2588</orcidid><orcidid>https://orcid.org/0000-0002-6357-818X</orcidid><oa>free_for_read</oa></addata></record> |
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source | MEDLINE; DOAJ Directory of Open Access Journals; Elektronische Zeitschriftenbibliothek - Frei zugängliche E-Journals; PubMed Central; Free Full-Text Journals in Chemistry; Public Library of Science (PLoS) |
subjects | Aging Algorithms Analysis Automation Biobanks Biological markers Biological Specimen Banks Biology and Life Sciences Biomarkers Cell number Codes Data mining Data processing Datasets Diagnosis Family medical history Female Gender Growth factors Health risks Heterogeneity Hospitals Humans Inflammatory diseases Insulin Insulin-Like Growth Factor I Insulin-like growth factors Learning algorithms Leukocytes (neutrophilic) Longitudinal Studies Lymphocytes Machine Learning Male Medical imaging Medical research Medicine and Health Sciences Medicine, Experimental Movement disorders Neurodegenerative diseases Neuroimaging Nonsteroidal anti-inflammatory drugs Parkinson Disease - diagnosis Parkinson Disease - epidemiology Parkinson's disease Parkinsons disease Pesticides Questionnaires Regression analysis Risk factors Signs and symptoms Survival analysis United Kingdom - epidemiology Variables |
title | Machine learning analysis of the UK Biobank reveals IGF-1 and inflammatory biomarkers predict Parkinson's disease risk |
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