Genomic analyses of fairy and fulmar prions (Procellariidae: Pachyptila spp.) reveals parallel evolution of bill morphology, and multiple species
Prions are small petrels that are abundant around the Southern Ocean. Here we use mitochondrial DNA (COI and cytochrome b) and nuclear reduced representation sequencing (ddRADseq) to examine the relationships within and between fairy (Pachyptila turtur) and fulmar (P. crassirostris) prions from acro...
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description | Prions are small petrels that are abundant around the Southern Ocean. Here we use mitochondrial DNA (COI and cytochrome b) and nuclear reduced representation sequencing (ddRADseq) to examine the relationships within and between fairy (Pachyptila turtur) and fulmar (P. crassirostris) prions from across their distributions. We found that neither species was recovered as monophyletic, and that at least three species were represented. Furthermore, we detected several genetic lineages that are also morphologically distinct occurring in near sympatry at two locations (Snares Islands and Chatham Islands). The factors that have driven diversification in the fairy/fulmar prion complex are unclear but may include philopatry, differences in foraging distribution during breeding, differences in non-breeding distributions and breeding habitat characteristics. The observed distribution of genetic variation in the fairy/fulmar prion complex is consistent with population expansion from ice-free Last Glacial Maximum refugia into previously glaciated areas. |
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Here we use mitochondrial DNA (COI and cytochrome b) and nuclear reduced representation sequencing (ddRADseq) to examine the relationships within and between fairy (Pachyptila turtur) and fulmar (P. crassirostris) prions from across their distributions. We found that neither species was recovered as monophyletic, and that at least three species were represented. Furthermore, we detected several genetic lineages that are also morphologically distinct occurring in near sympatry at two locations (Snares Islands and Chatham Islands). The factors that have driven diversification in the fairy/fulmar prion complex are unclear but may include philopatry, differences in foraging distribution during breeding, differences in non-breeding distributions and breeding habitat characteristics. The observed distribution of genetic variation in the fairy/fulmar prion complex is consistent with population expansion from ice-free Last Glacial Maximum refugia into previously glaciated areas.</description><identifier>ISSN: 1932-6203</identifier><identifier>EISSN: 1932-6203</identifier><identifier>DOI: 10.1371/journal.pone.0275102</identifier><identifier>PMID: 36166411</identifier><language>eng</language><publisher>United States: Public Library of Science</publisher><subject>Analysis ; Animals ; Biology and Life Sciences ; Birds - genetics ; Breeding ; Computer and Information Sciences ; Cytochrome ; Cytochrome b ; Cytochromes ; Cytochromes b - genetics ; Deoxyribonucleic acid ; DNA ; DNA, Mitochondrial - genetics ; Earth Sciences ; Evolutionary biology ; Foraging habitats ; Genetic aspects ; Genetic diversity ; Genetic Variation ; Genomic analysis ; Genomics ; Identification and classification ; Islands ; Last Glacial Maximum ; Methods ; Mitochondrial DNA ; Morphological variation ; Morphology ; Museums ; Natural history ; People and places ; Petrels ; Phenols ; Philopatry ; Phylogeny ; Population growth ; Prions ; Prions - genetics ; Refugia ; Research and Analysis Methods ; Species ; Sympatry</subject><ispartof>PloS one, 2022-09, Vol.17 (9), p.e0275102</ispartof><rights>COPYRIGHT 2022 Public Library of Science</rights><rights>2022 Shepherd et al. This is an open access article distributed under the terms of the Creative Commons Attribution License: http://creativecommons.org/licenses/by/4.0/ (the “License”), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. 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Here we use mitochondrial DNA (COI and cytochrome b) and nuclear reduced representation sequencing (ddRADseq) to examine the relationships within and between fairy (Pachyptila turtur) and fulmar (P. crassirostris) prions from across their distributions. We found that neither species was recovered as monophyletic, and that at least three species were represented. Furthermore, we detected several genetic lineages that are also morphologically distinct occurring in near sympatry at two locations (Snares Islands and Chatham Islands). The factors that have driven diversification in the fairy/fulmar prion complex are unclear but may include philopatry, differences in foraging distribution during breeding, differences in non-breeding distributions and breeding habitat characteristics. The observed distribution of genetic variation in the fairy/fulmar prion complex is consistent with population expansion from ice-free Last Glacial Maximum refugia into previously glaciated areas.</description><subject>Analysis</subject><subject>Animals</subject><subject>Biology and Life Sciences</subject><subject>Birds - genetics</subject><subject>Breeding</subject><subject>Computer and Information Sciences</subject><subject>Cytochrome</subject><subject>Cytochrome b</subject><subject>Cytochromes</subject><subject>Cytochromes b - genetics</subject><subject>Deoxyribonucleic acid</subject><subject>DNA</subject><subject>DNA, Mitochondrial - genetics</subject><subject>Earth Sciences</subject><subject>Evolutionary biology</subject><subject>Foraging habitats</subject><subject>Genetic aspects</subject><subject>Genetic diversity</subject><subject>Genetic Variation</subject><subject>Genomic analysis</subject><subject>Genomics</subject><subject>Identification and classification</subject><subject>Islands</subject><subject>Last Glacial Maximum</subject><subject>Methods</subject><subject>Mitochondrial DNA</subject><subject>Morphological variation</subject><subject>Morphology</subject><subject>Museums</subject><subject>Natural history</subject><subject>People and places</subject><subject>Petrels</subject><subject>Phenols</subject><subject>Philopatry</subject><subject>Phylogeny</subject><subject>Population growth</subject><subject>Prions</subject><subject>Prions - 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Academic</collection><collection>PubMed Central (Full Participant titles)</collection><collection>DOAJ Directory of Open Access Journals</collection><jtitle>PloS one</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Shepherd, Lara D</au><au>Miskelly, Colin M</au><au>Bulgarella, Mariana</au><au>Tennyson, Alan J D</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Genomic analyses of fairy and fulmar prions (Procellariidae: Pachyptila spp.) reveals parallel evolution of bill morphology, and multiple species</atitle><jtitle>PloS one</jtitle><addtitle>PLoS One</addtitle><date>2022-09-27</date><risdate>2022</risdate><volume>17</volume><issue>9</issue><spage>e0275102</spage><pages>e0275102-</pages><issn>1932-6203</issn><eissn>1932-6203</eissn><abstract>Prions are small petrels that are abundant around the Southern Ocean. Here we use mitochondrial DNA (COI and cytochrome b) and nuclear reduced representation sequencing (ddRADseq) to examine the relationships within and between fairy (Pachyptila turtur) and fulmar (P. crassirostris) prions from across their distributions. We found that neither species was recovered as monophyletic, and that at least three species were represented. Furthermore, we detected several genetic lineages that are also morphologically distinct occurring in near sympatry at two locations (Snares Islands and Chatham Islands). The factors that have driven diversification in the fairy/fulmar prion complex are unclear but may include philopatry, differences in foraging distribution during breeding, differences in non-breeding distributions and breeding habitat characteristics. The observed distribution of genetic variation in the fairy/fulmar prion complex is consistent with population expansion from ice-free Last Glacial Maximum refugia into previously glaciated areas.</abstract><cop>United States</cop><pub>Public Library of Science</pub><pmid>36166411</pmid><doi>10.1371/journal.pone.0275102</doi><orcidid>https://orcid.org/0000-0002-7582-8529</orcidid><orcidid>https://orcid.org/0000-0002-7136-0017</orcidid><oa>free_for_read</oa></addata></record> |
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subjects | Analysis Animals Biology and Life Sciences Birds - genetics Breeding Computer and Information Sciences Cytochrome Cytochrome b Cytochromes Cytochromes b - genetics Deoxyribonucleic acid DNA DNA, Mitochondrial - genetics Earth Sciences Evolutionary biology Foraging habitats Genetic aspects Genetic diversity Genetic Variation Genomic analysis Genomics Identification and classification Islands Last Glacial Maximum Methods Mitochondrial DNA Morphological variation Morphology Museums Natural history People and places Petrels Phenols Philopatry Phylogeny Population growth Prions Prions - genetics Refugia Research and Analysis Methods Species Sympatry |
title | Genomic analyses of fairy and fulmar prions (Procellariidae: Pachyptila spp.) reveals parallel evolution of bill morphology, and multiple species |
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