Robust and efficient COVID-19 detection techniques: A machine learning approach
The devastating impact of the Severe Acute Respiratory Syndrome-Coronavirus 2 (SARS-CoV-2) pandemic almost halted the global economy and is responsible for 6 million deaths with infection rates of over 524 million. With significant reservations, initially, the SARS-CoV-2 virus was suspected to be in...
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description | The devastating impact of the Severe Acute Respiratory Syndrome-Coronavirus 2 (SARS-CoV-2) pandemic almost halted the global economy and is responsible for 6 million deaths with infection rates of over 524 million. With significant reservations, initially, the SARS-CoV-2 virus was suspected to be infected by and closely related to Bats. However, over the periods of learning and critical development of experimental evidence, it is found to have some similarities with several gene clusters and virus proteins identified in animal-human transmission. Despite this substantial evidence and learnings, there is limited exploration regarding the SARS-CoV-2 genome to putative microRNAs (miRNAs) in the virus life cycle. In this context, this paper presents a detection method of SARS-CoV-2 precursor-miRNAs (pre-miRNAs) that helps to identify a quick detection of specific ribonucleic acid (RNAs). The approach employs an artificial neural network and proposes a model that estimated accuracy of 98.24%. The sampling technique includes a random selection of highly unbalanced datasets for reducing class imbalance following the application of matriculation artificial neural network that includes accuracy curve, loss curve, and confusion matrix. The classical approach to machine learning is then compared with the model and its performance. The proposed approach would be beneficial in identifying the target regions of RNA and better recognising of SARS-CoV-2 genome sequence to design oligonucleotide-based drugs against the genetic structure of the virus. |
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Mahadi ; Murtaz, Saba Binte ; Islam, Muhammad Usama ; Sadeq, Muhammad Jafar ; Uddin, Jasim</creator><creatorcontrib>Hasan, Md. Mahadi ; Murtaz, Saba Binte ; Islam, Muhammad Usama ; Sadeq, Muhammad Jafar ; Uddin, Jasim</creatorcontrib><description>The devastating impact of the Severe Acute Respiratory Syndrome-Coronavirus 2 (SARS-CoV-2) pandemic almost halted the global economy and is responsible for 6 million deaths with infection rates of over 524 million. With significant reservations, initially, the SARS-CoV-2 virus was suspected to be infected by and closely related to Bats. However, over the periods of learning and critical development of experimental evidence, it is found to have some similarities with several gene clusters and virus proteins identified in animal-human transmission. Despite this substantial evidence and learnings, there is limited exploration regarding the SARS-CoV-2 genome to putative microRNAs (miRNAs) in the virus life cycle. In this context, this paper presents a detection method of SARS-CoV-2 precursor-miRNAs (pre-miRNAs) that helps to identify a quick detection of specific ribonucleic acid (RNAs). The approach employs an artificial neural network and proposes a model that estimated accuracy of 98.24%. The sampling technique includes a random selection of highly unbalanced datasets for reducing class imbalance following the application of matriculation artificial neural network that includes accuracy curve, loss curve, and confusion matrix. The classical approach to machine learning is then compared with the model and its performance. The proposed approach would be beneficial in identifying the target regions of RNA and better recognising of SARS-CoV-2 genome sequence to design oligonucleotide-based drugs against the genetic structure of the virus.</description><identifier>ISSN: 1932-6203</identifier><identifier>EISSN: 1932-6203</identifier><identifier>DOI: 10.1371/journal.pone.0274538</identifier><identifier>PMID: 36107971</identifier><language>eng</language><publisher>San Francisco: Public Library of Science</publisher><subject>Analysis ; Artificial neural networks ; Biology and life sciences ; Computer and Information Sciences ; Coronaviruses ; COVID-19 ; Drug development ; Evaluation ; Gene clusters ; Genetic structure ; Genomes ; Global economy ; Learning algorithms ; Life cycles ; Machine learning ; Medical tests ; Medicine and health sciences ; MicroRNAs ; miRNA ; Model accuracy ; Neural networks ; Nucleotide sequence ; Oligonucleotides ; Pandemics ; Physical Sciences ; Research and Analysis Methods ; Ribonucleic acid ; RNA ; Sampling techniques ; Severe acute respiratory syndrome ; Severe acute respiratory syndrome coronavirus 2 ; Viral diseases ; Viruses</subject><ispartof>PloS one, 2022-09, Vol.17 (9), p.e0274538-e0274538</ispartof><rights>COPYRIGHT 2022 Public Library of Science</rights><rights>2022 Hasan et al. 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Despite this substantial evidence and learnings, there is limited exploration regarding the SARS-CoV-2 genome to putative microRNAs (miRNAs) in the virus life cycle. In this context, this paper presents a detection method of SARS-CoV-2 precursor-miRNAs (pre-miRNAs) that helps to identify a quick detection of specific ribonucleic acid (RNAs). The approach employs an artificial neural network and proposes a model that estimated accuracy of 98.24%. The sampling technique includes a random selection of highly unbalanced datasets for reducing class imbalance following the application of matriculation artificial neural network that includes accuracy curve, loss curve, and confusion matrix. The classical approach to machine learning is then compared with the model and its performance. 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Mahadi</au><au>Murtaz, Saba Binte</au><au>Islam, Muhammad Usama</au><au>Sadeq, Muhammad Jafar</au><au>Uddin, Jasim</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Robust and efficient COVID-19 detection techniques: A machine learning approach</atitle><jtitle>PloS one</jtitle><date>2022-09-15</date><risdate>2022</risdate><volume>17</volume><issue>9</issue><spage>e0274538</spage><epage>e0274538</epage><pages>e0274538-e0274538</pages><issn>1932-6203</issn><eissn>1932-6203</eissn><abstract>The devastating impact of the Severe Acute Respiratory Syndrome-Coronavirus 2 (SARS-CoV-2) pandemic almost halted the global economy and is responsible for 6 million deaths with infection rates of over 524 million. With significant reservations, initially, the SARS-CoV-2 virus was suspected to be infected by and closely related to Bats. 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subjects | Analysis Artificial neural networks Biology and life sciences Computer and Information Sciences Coronaviruses COVID-19 Drug development Evaluation Gene clusters Genetic structure Genomes Global economy Learning algorithms Life cycles Machine learning Medical tests Medicine and health sciences MicroRNAs miRNA Model accuracy Neural networks Nucleotide sequence Oligonucleotides Pandemics Physical Sciences Research and Analysis Methods Ribonucleic acid RNA Sampling techniques Severe acute respiratory syndrome Severe acute respiratory syndrome coronavirus 2 Viral diseases Viruses |
title | Robust and efficient COVID-19 detection techniques: A machine learning approach |
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