Prevalence and epidemiological characteristics of COVID-19 after one year of pandemic in Jakarta and neighbouring areas, Indonesia: A single center study
We determined the prevalence and epidemiological characteristics of COVID-19 in Jakarta and neighboring areas, Indonesia from March 2020 to February 2021, based on nasopharyngeal/oropharyngeal (NP/OP) swab specimens that were tested at the Eijkman Institute for Molecular Biology, Jakarta. NP/OP swab...
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| Veröffentlicht in: | PloS one 2022-05, Vol.17 (5), p.e0268241-e0268241 |
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| creator | Setiadi, Wuryantari Rozi, Ismail Ekoprayitno Safari, Dodi Daningrat, Wa Ode Dwi Johar, Edison Yohan, Benediktus Yudhaputri, Frilasita Aisyah Lestari, Karina Dian Oktavianthi, Sukma Myint, Khin Saw Aye Malik, Safarina G Soebandrio, Amin |
| description | We determined the prevalence and epidemiological characteristics of COVID-19 in Jakarta and neighboring areas, Indonesia from March 2020 to February 2021, based on nasopharyngeal/oropharyngeal (NP/OP) swab specimens that were tested at the Eijkman Institute for Molecular Biology, Jakarta. NP/OP swab specimens were collected from COVID-19 suspects or individuals in contact tracing programs from primary healthcare centers (PHC) and hospitals. The specimens were screened for the SARS-CoV-2 by qRT-PCR. Demography data and clinical symptoms were collected using national standardized laboratory form. Of 64,364 specimens, 10,130 (15.7%) were confirmed positive for SARS-CoV-2, with the peak prevalence of infection in March 2020 (26.3%) follow by in January 2021 (23.9%) and February 2021 (21.8%). We found that the positivity rate of the specimens from Jakarta, West Java, and Banten was 16.3%, 13.3%, and 16.8%, respectively. Positivity rate was higher in specimens from hospitals (16.9%) than PHC (9.4%). Of the positive specimens, 29.6% were from individuals aged >60 years old, followed by individuals aged 41-60 years old (24.2%). Among symptomatic cases of SARS-CoV-2, the most common symptoms were cough, fever, and a combination of both cough & fever. In conclusion, this study illustrates the prevalence and epidemiological characteristics from one COVID-19 diagnostic center in Jakarta and neighbouring areas in Indonesia. |
| doi_str_mv | 10.1371/journal.pone.0268241 |
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NP/OP swab specimens were collected from COVID-19 suspects or individuals in contact tracing programs from primary healthcare centers (PHC) and hospitals. The specimens were screened for the SARS-CoV-2 by qRT-PCR. Demography data and clinical symptoms were collected using national standardized laboratory form. Of 64,364 specimens, 10,130 (15.7%) were confirmed positive for SARS-CoV-2, with the peak prevalence of infection in March 2020 (26.3%) follow by in January 2021 (23.9%) and February 2021 (21.8%). We found that the positivity rate of the specimens from Jakarta, West Java, and Banten was 16.3%, 13.3%, and 16.8%, respectively. Positivity rate was higher in specimens from hospitals (16.9%) than PHC (9.4%). Of the positive specimens, 29.6% were from individuals aged >60 years old, followed by individuals aged 41-60 years old (24.2%). Among symptomatic cases of SARS-CoV-2, the most common symptoms were cough, fever, and a combination of both cough & fever. In conclusion, this study illustrates the prevalence and epidemiological characteristics from one COVID-19 diagnostic center in Jakarta and neighbouring areas in Indonesia.</description><identifier>ISSN: 1932-6203</identifier><identifier>EISSN: 1932-6203</identifier><identifier>DOI: 10.1371/journal.pone.0268241</identifier><identifier>PMID: 35550635</identifier><language>eng</language><publisher>United States: Public Library of Science</publisher><subject>Adult ; Age groups ; Analysis ; Biology and life sciences ; Contact tracing ; Control ; Coronaviruses ; Cough ; Cough - epidemiology ; COVID-19 ; COVID-19 - epidemiology ; Demography ; Disease transmission ; Epidemics ; Epidemiology ; Fever ; Fever - epidemiology ; Hospitals ; Humans ; Indonesia ; Indonesia - epidemiology ; Laboratories ; Medical personnel ; Medicine and Health Sciences ; Middle Aged ; Molecular biology ; Pandemics ; People and Places ; Pneumonia ; Prevalence ; Provinces ; Research and Analysis Methods ; SARS-CoV-2 ; Severe acute respiratory syndrome ; Severe acute respiratory syndrome coronavirus 2 ; Viral diseases</subject><ispartof>PloS one, 2022-05, Vol.17 (5), p.e0268241-e0268241</ispartof><rights>COPYRIGHT 2022 Public Library of Science</rights><rights>2022 Setiadi et al. 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China</collection><collection>Engineering Collection</collection><collection>Environmental Science Collection</collection><collection>Genetics Abstracts</collection><collection>MEDLINE - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><collection>DOAJ Directory of Open Access Journals</collection><jtitle>PloS one</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Setiadi, Wuryantari</au><au>Rozi, Ismail Ekoprayitno</au><au>Safari, Dodi</au><au>Daningrat, Wa Ode Dwi</au><au>Johar, Edison</au><au>Yohan, Benediktus</au><au>Yudhaputri, Frilasita Aisyah</au><au>Lestari, Karina Dian</au><au>Oktavianthi, Sukma</au><au>Myint, Khin Saw Aye</au><au>Malik, Safarina G</au><au>Soebandrio, Amin</au><au>Pinzon, Rizaldy Taslim</au><aucorp>Wascove team</aucorp><aucorp>on behalf of the Wascove team</aucorp><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Prevalence and epidemiological characteristics of COVID-19 after one year of pandemic in Jakarta and neighbouring areas, Indonesia: A single center study</atitle><jtitle>PloS one</jtitle><addtitle>PLoS One</addtitle><date>2022-05-12</date><risdate>2022</risdate><volume>17</volume><issue>5</issue><spage>e0268241</spage><epage>e0268241</epage><pages>e0268241-e0268241</pages><issn>1932-6203</issn><eissn>1932-6203</eissn><abstract>We determined the prevalence and epidemiological characteristics of COVID-19 in Jakarta and neighboring areas, Indonesia from March 2020 to February 2021, based on nasopharyngeal/oropharyngeal (NP/OP) swab specimens that were tested at the Eijkman Institute for Molecular Biology, Jakarta. NP/OP swab specimens were collected from COVID-19 suspects or individuals in contact tracing programs from primary healthcare centers (PHC) and hospitals. The specimens were screened for the SARS-CoV-2 by qRT-PCR. Demography data and clinical symptoms were collected using national standardized laboratory form. Of 64,364 specimens, 10,130 (15.7%) were confirmed positive for SARS-CoV-2, with the peak prevalence of infection in March 2020 (26.3%) follow by in January 2021 (23.9%) and February 2021 (21.8%). We found that the positivity rate of the specimens from Jakarta, West Java, and Banten was 16.3%, 13.3%, and 16.8%, respectively. Positivity rate was higher in specimens from hospitals (16.9%) than PHC (9.4%). Of the positive specimens, 29.6% were from individuals aged >60 years old, followed by individuals aged 41-60 years old (24.2%). Among symptomatic cases of SARS-CoV-2, the most common symptoms were cough, fever, and a combination of both cough & fever. In conclusion, this study illustrates the prevalence and epidemiological characteristics from one COVID-19 diagnostic center in Jakarta and neighbouring areas in Indonesia.</abstract><cop>United States</cop><pub>Public Library of Science</pub><pmid>35550635</pmid><doi>10.1371/journal.pone.0268241</doi><tpages>e0268241</tpages><orcidid>https://orcid.org/0000-0003-2341-5404</orcidid><orcidid>https://orcid.org/0000-0002-2087-7331</orcidid><orcidid>https://orcid.org/0000-0003-1521-3247</orcidid><orcidid>https://orcid.org/0000-0002-7258-2586</orcidid><orcidid>https://orcid.org/0000-0002-5600-8111</orcidid><orcidid>https://orcid.org/0000-0002-9491-6487</orcidid><orcidid>https://orcid.org/0000-0002-5856-4808</orcidid><oa>free_for_read</oa></addata></record> |
| fulltext | fulltext |
| identifier | ISSN: 1932-6203 |
| ispartof | PloS one, 2022-05, Vol.17 (5), p.e0268241-e0268241 |
| issn | 1932-6203 1932-6203 |
| language | eng |
| recordid | cdi_plos_journals_2686245565 |
| source | MEDLINE; DOAJ Directory of Open Access Journals; Elektronische Zeitschriftenbibliothek - Frei zugängliche E-Journals; Public Library of Science (PLoS); PubMed Central; Free Full-Text Journals in Chemistry |
| subjects | Adult Age groups Analysis Biology and life sciences Contact tracing Control Coronaviruses Cough Cough - epidemiology COVID-19 COVID-19 - epidemiology Demography Disease transmission Epidemics Epidemiology Fever Fever - epidemiology Hospitals Humans Indonesia Indonesia - epidemiology Laboratories Medical personnel Medicine and Health Sciences Middle Aged Molecular biology Pandemics People and Places Pneumonia Prevalence Provinces Research and Analysis Methods SARS-CoV-2 Severe acute respiratory syndrome Severe acute respiratory syndrome coronavirus 2 Viral diseases |
| title | Prevalence and epidemiological characteristics of COVID-19 after one year of pandemic in Jakarta and neighbouring areas, Indonesia: A single center study |
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