Estimating repeat spectra and genome length from low-coverage genome skims with RESPECT

The cost of sequencing the genome is dropping at a much faster rate compared to assembling and finishing the genome. The use of lightly sampled genomes (genome-skims) could be transformative for genomic ecology, and results using k-mers have shown the advantage of this approach in identification and...

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Veröffentlicht in:PLoS computational biology 2021-11, Vol.17 (11), p.e1009449-e1009449
Hauptverfasser: Sarmashghi, Shahab, Balaban, Metin, Rachtman, Eleonora, Touri, Behrouz, Mirarab, Siavash, Bafna, Vineet
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Sprache:eng
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