Fourier Transform Infrared Spectroscopy vibrational bands study of Spinacia oleracea and Trigonella corniculata under biochar amendment in naturally contaminated soil
Fourier transform infrared spectroscopy (FTIR) spectroscopy detects functional groups such as vibrational bands like N-H, O-H, C-H, C = O (ester, amine, ketone, aldehyde), C = C, C = N (vibrational modes of a tetrapyrrole ring) and simply C = N. The FTIR of these bands is fundamental to the investig...
Gespeichert in:
Veröffentlicht in: | PloS one 2021-06, Vol.16 (6), p.e0253390-e0253390 |
---|---|
Hauptverfasser: | , , , , , , , , , , , , , |
Format: | Artikel |
Sprache: | eng |
Schlagworte: | |
Online-Zugang: | Volltext |
Tags: |
Tag hinzufügen
Keine Tags, Fügen Sie den ersten Tag hinzu!
|
container_end_page | e0253390 |
---|---|
container_issue | 6 |
container_start_page | e0253390 |
container_title | PloS one |
container_volume | 16 |
creator | Younis, Uzma Rahi, Ashfaq Ahmad Danish, Subhan Ali, Muhammad Arif Ahmed, Niaz Datta, Rahul Fahad, Shah Holatko, Jiri Hammerschmiedt, Tereza Brtnicky, Martin Zarei, Tayebeh Baazeem, Alaa Sabagh, Ayman EL Glick, Bernard R |
description | Fourier transform infrared spectroscopy (FTIR) spectroscopy detects functional groups such as vibrational bands like N-H, O-H, C-H, C = O (ester, amine, ketone, aldehyde), C = C, C = N (vibrational modes of a tetrapyrrole ring) and simply C = N. The FTIR of these bands is fundamental to the investigation of the effect of biochar (BC) treatment on structural changes in the chlorophyll molecules of both plants that were tested. For this, dried leaf of Spinacia oleracia (spinach) and Trigonella corniculata (fenugreek) were selected for FTIR spectral study of chlorophyll associated functional groups. The study's primary goal was to investigate the silent features of infrared (IR) spectra of dried leave samples. The data obtained from the current study also shows that leaf chlorophyll can mask or suppress other molecules' FITR bands, including proteins. In addition, the C = O bands with Mg and the C9 ketonic group of chlorophyll are observed as peaks at1600 (0%BC), 1650 (3%BC) and 1640, or near to1700 (5%BC) in spinach samples. In fenugreek, additional effects are observed in the FTIR spectra of chlorophyll at the major groups of C = C, C = O and C9 of the ketonic groups, and the vibrational bands are more evident at C-H and N-H of the tetrapyrrole ring. It is concluded that C-N bands are more visible in 5% BC treated spinach and fenugreek than in all other treatments. These types of spectra are useful in detecting changes or visibility of functional groups, which are very helpful in supporting biochemical data such as an increase in protein can be detected by more visibility of C-N bands in FTIR spectra. |
doi_str_mv | 10.1371/journal.pone.0253390 |
format | Article |
fullrecord | <record><control><sourceid>gale_plos_</sourceid><recordid>TN_cdi_plos_journals_2546969202</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><galeid>A666947394</galeid><doaj_id>oai_doaj_org_article_a8d4446d83744028a1425d36805409cd</doaj_id><sourcerecordid>A666947394</sourcerecordid><originalsourceid>FETCH-LOGICAL-c669t-558d66ceda32e44a1b486962efe936c1b3e4d7b88474d2e8fbc52451e50cd5543</originalsourceid><addsrcrecordid>eNqNk99qFDEUxgdRbK2-gWBAEL3YNZN_O3NTKMXqQqFgq7fhTJLZTckka5Ip7gv5nGa6q3SlFzIMMyS_851zvuRU1esaz2u6qD_ehjF6cPNN8GaOCae0xU-q47qlZCYIpk8f_B9VL1K6xZjTRojn1RFldVs3tD2ufl0UGWsiuongUx_igJa-jxCNRtcbo3IMSYXNFt3ZLkK2oaREHXidUMqj3qLQF856UBZQcCaCMoDKfhG0q1Kac4BUiN6q0UEGNHpdsnU2qDVEBIPxurwZWY885DGCc9sS4DMMRTWXMlKw7mX1rAeXzKv996T6dvHp5vzL7PLq8_L87HKmhGjzjPNGC6GMBkoMY1B3rBGtIKY3LRWq7qhhetE1DVswTUzTd4oTxmvDsdKcM3pSvdnpblxIcm9xkoSzItMSTAqx3BE6wK3cRDtA3MoAVt4vhLiSELNVzkhoNGNM6IYuGMOkgZoRrqloMGe4Vbpone6zjd1gtCo-lP4PRA93vF3LVbiTDWGs4VMx7_cCMfwYTcpysElNnnsTxvu6F5xyiuuCvv0Hfby7PbWC0oD1fSh51SQqz0SxmC1oO7k0f4QqjzaDLWdnelvWDwI-HARM52t-5hWMKcnl9df_Z6--H7LvHrBrAy6vU3DjdE_TIch2oCr3OUXT_zW5xnIapz9uyGmc5H6c6G-EXxQg</addsrcrecordid><sourcetype>Open Website</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype><pqid>2546969202</pqid></control><display><type>article</type><title>Fourier Transform Infrared Spectroscopy vibrational bands study of Spinacia oleracea and Trigonella corniculata under biochar amendment in naturally contaminated soil</title><source>Full-Text Journals in Chemistry (Open access)</source><source>DOAJ Directory of Open Access Journals</source><source>Public Library of Science (PLoS)(OpenAccess)</source><source>PubMed Central</source><source>EZB Electronic Journals Library</source><creator>Younis, Uzma ; Rahi, Ashfaq Ahmad ; Danish, Subhan ; Ali, Muhammad Arif ; Ahmed, Niaz ; Datta, Rahul ; Fahad, Shah ; Holatko, Jiri ; Hammerschmiedt, Tereza ; Brtnicky, Martin ; Zarei, Tayebeh ; Baazeem, Alaa ; Sabagh, Ayman EL ; Glick, Bernard R</creator><contributor>Farooq, Shahid</contributor><creatorcontrib>Younis, Uzma ; Rahi, Ashfaq Ahmad ; Danish, Subhan ; Ali, Muhammad Arif ; Ahmed, Niaz ; Datta, Rahul ; Fahad, Shah ; Holatko, Jiri ; Hammerschmiedt, Tereza ; Brtnicky, Martin ; Zarei, Tayebeh ; Baazeem, Alaa ; Sabagh, Ayman EL ; Glick, Bernard R ; Farooq, Shahid</creatorcontrib><description>Fourier transform infrared spectroscopy (FTIR) spectroscopy detects functional groups such as vibrational bands like N-H, O-H, C-H, C = O (ester, amine, ketone, aldehyde), C = C, C = N (vibrational modes of a tetrapyrrole ring) and simply C = N. The FTIR of these bands is fundamental to the investigation of the effect of biochar (BC) treatment on structural changes in the chlorophyll molecules of both plants that were tested. For this, dried leaf of Spinacia oleracia (spinach) and Trigonella corniculata (fenugreek) were selected for FTIR spectral study of chlorophyll associated functional groups. The study's primary goal was to investigate the silent features of infrared (IR) spectra of dried leave samples. The data obtained from the current study also shows that leaf chlorophyll can mask or suppress other molecules' FITR bands, including proteins. In addition, the C = O bands with Mg and the C9 ketonic group of chlorophyll are observed as peaks at1600 (0%BC), 1650 (3%BC) and 1640, or near to1700 (5%BC) in spinach samples. In fenugreek, additional effects are observed in the FTIR spectra of chlorophyll at the major groups of C = C, C = O and C9 of the ketonic groups, and the vibrational bands are more evident at C-H and N-H of the tetrapyrrole ring. It is concluded that C-N bands are more visible in 5% BC treated spinach and fenugreek than in all other treatments. These types of spectra are useful in detecting changes or visibility of functional groups, which are very helpful in supporting biochemical data such as an increase in protein can be detected by more visibility of C-N bands in FTIR spectra.</description><identifier>ISSN: 1932-6203</identifier><identifier>EISSN: 1932-6203</identifier><identifier>DOI: 10.1371/journal.pone.0253390</identifier><identifier>PMID: 34191839</identifier><language>eng</language><publisher>San Francisco: Public Library of Science</publisher><subject>Aldehydes ; Analysis ; Band spectra ; Biology and Life Sciences ; Change detection ; Charcoal ; Chlorophyll ; Cotton ; Earth Sciences ; Evaluation ; Experiments ; Fenugreek ; Fourier transforms ; Functional groups ; Genetic aspects ; Growth ; Heavy metals ; Hydrocarbons ; Infrared spectra ; Infrared spectroscopy ; Laboratories ; Leaves ; Photosynthesis ; Physical Sciences ; Pollutants ; Proteins ; Research and Analysis Methods ; Sediment pollution ; Soil contamination ; Soil pollution ; Soil sciences ; Spinach ; Spinacia oleracea ; Trigonella corniculata</subject><ispartof>PloS one, 2021-06, Vol.16 (6), p.e0253390-e0253390</ispartof><rights>COPYRIGHT 2021 Public Library of Science</rights><rights>2021 Younis et al. This is an open access article distributed under the terms of the Creative Commons Attribution License: http://creativecommons.org/licenses/by/4.0/ (the “License”), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License.</rights><rights>2021 Younis et al 2021 Younis et al</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c669t-558d66ceda32e44a1b486962efe936c1b3e4d7b88474d2e8fbc52451e50cd5543</citedby><cites>FETCH-LOGICAL-c669t-558d66ceda32e44a1b486962efe936c1b3e4d7b88474d2e8fbc52451e50cd5543</cites><orcidid>0000-0001-5237-722X ; 0000-0001-9001-2555 ; 0000-0003-4156-4673</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC8244852/pdf/$$EPDF$$P50$$Gpubmedcentral$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC8244852/$$EHTML$$P50$$Gpubmedcentral$$Hfree_for_read</linktohtml><link.rule.ids>230,314,727,780,784,864,885,2102,2928,23866,27924,27925,53791,53793,79600,79601</link.rule.ids></links><search><contributor>Farooq, Shahid</contributor><creatorcontrib>Younis, Uzma</creatorcontrib><creatorcontrib>Rahi, Ashfaq Ahmad</creatorcontrib><creatorcontrib>Danish, Subhan</creatorcontrib><creatorcontrib>Ali, Muhammad Arif</creatorcontrib><creatorcontrib>Ahmed, Niaz</creatorcontrib><creatorcontrib>Datta, Rahul</creatorcontrib><creatorcontrib>Fahad, Shah</creatorcontrib><creatorcontrib>Holatko, Jiri</creatorcontrib><creatorcontrib>Hammerschmiedt, Tereza</creatorcontrib><creatorcontrib>Brtnicky, Martin</creatorcontrib><creatorcontrib>Zarei, Tayebeh</creatorcontrib><creatorcontrib>Baazeem, Alaa</creatorcontrib><creatorcontrib>Sabagh, Ayman EL</creatorcontrib><creatorcontrib>Glick, Bernard R</creatorcontrib><title>Fourier Transform Infrared Spectroscopy vibrational bands study of Spinacia oleracea and Trigonella corniculata under biochar amendment in naturally contaminated soil</title><title>PloS one</title><description>Fourier transform infrared spectroscopy (FTIR) spectroscopy detects functional groups such as vibrational bands like N-H, O-H, C-H, C = O (ester, amine, ketone, aldehyde), C = C, C = N (vibrational modes of a tetrapyrrole ring) and simply C = N. The FTIR of these bands is fundamental to the investigation of the effect of biochar (BC) treatment on structural changes in the chlorophyll molecules of both plants that were tested. For this, dried leaf of Spinacia oleracia (spinach) and Trigonella corniculata (fenugreek) were selected for FTIR spectral study of chlorophyll associated functional groups. The study's primary goal was to investigate the silent features of infrared (IR) spectra of dried leave samples. The data obtained from the current study also shows that leaf chlorophyll can mask or suppress other molecules' FITR bands, including proteins. In addition, the C = O bands with Mg and the C9 ketonic group of chlorophyll are observed as peaks at1600 (0%BC), 1650 (3%BC) and 1640, or near to1700 (5%BC) in spinach samples. In fenugreek, additional effects are observed in the FTIR spectra of chlorophyll at the major groups of C = C, C = O and C9 of the ketonic groups, and the vibrational bands are more evident at C-H and N-H of the tetrapyrrole ring. It is concluded that C-N bands are more visible in 5% BC treated spinach and fenugreek than in all other treatments. These types of spectra are useful in detecting changes or visibility of functional groups, which are very helpful in supporting biochemical data such as an increase in protein can be detected by more visibility of C-N bands in FTIR spectra.</description><subject>Aldehydes</subject><subject>Analysis</subject><subject>Band spectra</subject><subject>Biology and Life Sciences</subject><subject>Change detection</subject><subject>Charcoal</subject><subject>Chlorophyll</subject><subject>Cotton</subject><subject>Earth Sciences</subject><subject>Evaluation</subject><subject>Experiments</subject><subject>Fenugreek</subject><subject>Fourier transforms</subject><subject>Functional groups</subject><subject>Genetic aspects</subject><subject>Growth</subject><subject>Heavy metals</subject><subject>Hydrocarbons</subject><subject>Infrared spectra</subject><subject>Infrared spectroscopy</subject><subject>Laboratories</subject><subject>Leaves</subject><subject>Photosynthesis</subject><subject>Physical Sciences</subject><subject>Pollutants</subject><subject>Proteins</subject><subject>Research and Analysis Methods</subject><subject>Sediment pollution</subject><subject>Soil contamination</subject><subject>Soil pollution</subject><subject>Soil sciences</subject><subject>Spinach</subject><subject>Spinacia oleracea</subject><subject>Trigonella corniculata</subject><issn>1932-6203</issn><issn>1932-6203</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2021</creationdate><recordtype>article</recordtype><sourceid>ABUWG</sourceid><sourceid>AFKRA</sourceid><sourceid>AZQEC</sourceid><sourceid>BENPR</sourceid><sourceid>CCPQU</sourceid><sourceid>DWQXO</sourceid><sourceid>GNUQQ</sourceid><sourceid>DOA</sourceid><recordid>eNqNk99qFDEUxgdRbK2-gWBAEL3YNZN_O3NTKMXqQqFgq7fhTJLZTckka5Ip7gv5nGa6q3SlFzIMMyS_851zvuRU1esaz2u6qD_ehjF6cPNN8GaOCae0xU-q47qlZCYIpk8f_B9VL1K6xZjTRojn1RFldVs3tD2ufl0UGWsiuongUx_igJa-jxCNRtcbo3IMSYXNFt3ZLkK2oaREHXidUMqj3qLQF856UBZQcCaCMoDKfhG0q1Kac4BUiN6q0UEGNHpdsnU2qDVEBIPxurwZWY885DGCc9sS4DMMRTWXMlKw7mX1rAeXzKv996T6dvHp5vzL7PLq8_L87HKmhGjzjPNGC6GMBkoMY1B3rBGtIKY3LRWq7qhhetE1DVswTUzTd4oTxmvDsdKcM3pSvdnpblxIcm9xkoSzItMSTAqx3BE6wK3cRDtA3MoAVt4vhLiSELNVzkhoNGNM6IYuGMOkgZoRrqloMGe4Vbpone6zjd1gtCo-lP4PRA93vF3LVbiTDWGs4VMx7_cCMfwYTcpysElNnnsTxvu6F5xyiuuCvv0Hfby7PbWC0oD1fSh51SQqz0SxmC1oO7k0f4QqjzaDLWdnelvWDwI-HARM52t-5hWMKcnl9df_Z6--H7LvHrBrAy6vU3DjdE_TIch2oCr3OUXT_zW5xnIapz9uyGmc5H6c6G-EXxQg</recordid><startdate>20210630</startdate><enddate>20210630</enddate><creator>Younis, Uzma</creator><creator>Rahi, Ashfaq Ahmad</creator><creator>Danish, Subhan</creator><creator>Ali, Muhammad Arif</creator><creator>Ahmed, Niaz</creator><creator>Datta, Rahul</creator><creator>Fahad, Shah</creator><creator>Holatko, Jiri</creator><creator>Hammerschmiedt, Tereza</creator><creator>Brtnicky, Martin</creator><creator>Zarei, Tayebeh</creator><creator>Baazeem, Alaa</creator><creator>Sabagh, Ayman EL</creator><creator>Glick, Bernard R</creator><general>Public Library of Science</general><general>Public Library of Science (PLoS)</general><scope>AAYXX</scope><scope>CITATION</scope><scope>IOV</scope><scope>ISR</scope><scope>3V.</scope><scope>7QG</scope><scope>7QL</scope><scope>7QO</scope><scope>7RV</scope><scope>7SN</scope><scope>7SS</scope><scope>7T5</scope><scope>7TG</scope><scope>7TM</scope><scope>7U9</scope><scope>7X2</scope><scope>7X7</scope><scope>7XB</scope><scope>88E</scope><scope>8AO</scope><scope>8C1</scope><scope>8FD</scope><scope>8FE</scope><scope>8FG</scope><scope>8FH</scope><scope>8FI</scope><scope>8FJ</scope><scope>8FK</scope><scope>ABJCF</scope><scope>ABUWG</scope><scope>AFKRA</scope><scope>ARAPS</scope><scope>ATCPS</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BGLVJ</scope><scope>BHPHI</scope><scope>C1K</scope><scope>CCPQU</scope><scope>D1I</scope><scope>DWQXO</scope><scope>FR3</scope><scope>FYUFA</scope><scope>GHDGH</scope><scope>GNUQQ</scope><scope>H94</scope><scope>HCIFZ</scope><scope>K9.</scope><scope>KB.</scope><scope>KB0</scope><scope>KL.</scope><scope>L6V</scope><scope>LK8</scope><scope>M0K</scope><scope>M0S</scope><scope>M1P</scope><scope>M7N</scope><scope>M7P</scope><scope>M7S</scope><scope>NAPCQ</scope><scope>P5Z</scope><scope>P62</scope><scope>P64</scope><scope>PATMY</scope><scope>PDBOC</scope><scope>PIMPY</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>PRINS</scope><scope>PTHSS</scope><scope>PYCSY</scope><scope>RC3</scope><scope>7X8</scope><scope>5PM</scope><scope>DOA</scope><orcidid>https://orcid.org/0000-0001-5237-722X</orcidid><orcidid>https://orcid.org/0000-0001-9001-2555</orcidid><orcidid>https://orcid.org/0000-0003-4156-4673</orcidid></search><sort><creationdate>20210630</creationdate><title>Fourier Transform Infrared Spectroscopy vibrational bands study of Spinacia oleracea and Trigonella corniculata under biochar amendment in naturally contaminated soil</title><author>Younis, Uzma ; Rahi, Ashfaq Ahmad ; Danish, Subhan ; Ali, Muhammad Arif ; Ahmed, Niaz ; Datta, Rahul ; Fahad, Shah ; Holatko, Jiri ; Hammerschmiedt, Tereza ; Brtnicky, Martin ; Zarei, Tayebeh ; Baazeem, Alaa ; Sabagh, Ayman EL ; Glick, Bernard R</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c669t-558d66ceda32e44a1b486962efe936c1b3e4d7b88474d2e8fbc52451e50cd5543</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2021</creationdate><topic>Aldehydes</topic><topic>Analysis</topic><topic>Band spectra</topic><topic>Biology and Life Sciences</topic><topic>Change detection</topic><topic>Charcoal</topic><topic>Chlorophyll</topic><topic>Cotton</topic><topic>Earth Sciences</topic><topic>Evaluation</topic><topic>Experiments</topic><topic>Fenugreek</topic><topic>Fourier transforms</topic><topic>Functional groups</topic><topic>Genetic aspects</topic><topic>Growth</topic><topic>Heavy metals</topic><topic>Hydrocarbons</topic><topic>Infrared spectra</topic><topic>Infrared spectroscopy</topic><topic>Laboratories</topic><topic>Leaves</topic><topic>Photosynthesis</topic><topic>Physical Sciences</topic><topic>Pollutants</topic><topic>Proteins</topic><topic>Research and Analysis Methods</topic><topic>Sediment pollution</topic><topic>Soil contamination</topic><topic>Soil pollution</topic><topic>Soil sciences</topic><topic>Spinach</topic><topic>Spinacia oleracea</topic><topic>Trigonella corniculata</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Younis, Uzma</creatorcontrib><creatorcontrib>Rahi, Ashfaq Ahmad</creatorcontrib><creatorcontrib>Danish, Subhan</creatorcontrib><creatorcontrib>Ali, Muhammad Arif</creatorcontrib><creatorcontrib>Ahmed, Niaz</creatorcontrib><creatorcontrib>Datta, Rahul</creatorcontrib><creatorcontrib>Fahad, Shah</creatorcontrib><creatorcontrib>Holatko, Jiri</creatorcontrib><creatorcontrib>Hammerschmiedt, Tereza</creatorcontrib><creatorcontrib>Brtnicky, Martin</creatorcontrib><creatorcontrib>Zarei, Tayebeh</creatorcontrib><creatorcontrib>Baazeem, Alaa</creatorcontrib><creatorcontrib>Sabagh, Ayman EL</creatorcontrib><creatorcontrib>Glick, Bernard R</creatorcontrib><collection>CrossRef</collection><collection>Gale In Context: Opposing Viewpoints</collection><collection>Gale In Context: Science</collection><collection>ProQuest Central (Corporate)</collection><collection>Animal Behavior Abstracts</collection><collection>Bacteriology Abstracts (Microbiology B)</collection><collection>Biotechnology Research Abstracts</collection><collection>ProQuest Nursing and Allied Health Journals</collection><collection>Ecology Abstracts</collection><collection>Entomology Abstracts (Full archive)</collection><collection>Immunology Abstracts</collection><collection>Meteorological & Geoastrophysical Abstracts</collection><collection>Nucleic Acids Abstracts</collection><collection>Virology and AIDS Abstracts</collection><collection>Agricultural Science Collection</collection><collection>ProQuest_Health & Medical Collection</collection><collection>ProQuest Central (purchase pre-March 2016)</collection><collection>Medical Database (Alumni Edition)</collection><collection>ProQuest Pharma Collection</collection><collection>Public Health Database (Proquest)</collection><collection>Technology Research Database</collection><collection>ProQuest SciTech Collection</collection><collection>ProQuest Technology Collection</collection><collection>ProQuest Natural Science Collection</collection><collection>Hospital Premium Collection</collection><collection>Hospital Premium Collection (Alumni Edition)</collection><collection>ProQuest Central (Alumni) (purchase pre-March 2016)</collection><collection>Materials Science & Engineering Collection</collection><collection>ProQuest Central (Alumni)</collection><collection>ProQuest Central UK/Ireland</collection><collection>Advanced Technologies & Aerospace Collection</collection><collection>Agricultural & Environmental Science Collection</collection><collection>ProQuest Central Essentials</collection><collection>Biological Science Collection</collection><collection>ProQuest Central</collection><collection>Technology Collection</collection><collection>ProQuest Natural Science Collection</collection><collection>Environmental Sciences and Pollution Management</collection><collection>ProQuest One Community College</collection><collection>ProQuest Materials Science Collection</collection><collection>ProQuest Central Korea</collection><collection>Engineering Research Database</collection><collection>Health Research Premium Collection</collection><collection>Health Research Premium Collection (Alumni)</collection><collection>ProQuest Central Student</collection><collection>AIDS and Cancer Research Abstracts</collection><collection>SciTech Premium Collection (Proquest) (PQ_SDU_P3)</collection><collection>ProQuest Health & Medical Complete (Alumni)</collection><collection>https://resources.nclive.org/materials</collection><collection>Nursing & Allied Health Database (Alumni Edition)</collection><collection>Meteorological & Geoastrophysical Abstracts - Academic</collection><collection>ProQuest Engineering Collection</collection><collection>ProQuest Biological Science Collection</collection><collection>Agriculture Science Database</collection><collection>Health & Medical Collection (Alumni Edition)</collection><collection>Medical Database</collection><collection>Algology Mycology and Protozoology Abstracts (Microbiology C)</collection><collection>Biological Science Database</collection><collection>Engineering Database</collection><collection>Nursing & Allied Health Premium</collection><collection>ProQuest advanced technologies & aerospace journals</collection><collection>ProQuest Advanced Technologies & Aerospace Collection</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Environmental Science Database</collection><collection>Materials science collection</collection><collection>Publicly Available Content Database</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>ProQuest Central China</collection><collection>Engineering collection</collection><collection>Environmental Science Collection</collection><collection>Genetics Abstracts</collection><collection>MEDLINE - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><collection>DOAJ Directory of Open Access Journals</collection><jtitle>PloS one</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Younis, Uzma</au><au>Rahi, Ashfaq Ahmad</au><au>Danish, Subhan</au><au>Ali, Muhammad Arif</au><au>Ahmed, Niaz</au><au>Datta, Rahul</au><au>Fahad, Shah</au><au>Holatko, Jiri</au><au>Hammerschmiedt, Tereza</au><au>Brtnicky, Martin</au><au>Zarei, Tayebeh</au><au>Baazeem, Alaa</au><au>Sabagh, Ayman EL</au><au>Glick, Bernard R</au><au>Farooq, Shahid</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Fourier Transform Infrared Spectroscopy vibrational bands study of Spinacia oleracea and Trigonella corniculata under biochar amendment in naturally contaminated soil</atitle><jtitle>PloS one</jtitle><date>2021-06-30</date><risdate>2021</risdate><volume>16</volume><issue>6</issue><spage>e0253390</spage><epage>e0253390</epage><pages>e0253390-e0253390</pages><issn>1932-6203</issn><eissn>1932-6203</eissn><abstract>Fourier transform infrared spectroscopy (FTIR) spectroscopy detects functional groups such as vibrational bands like N-H, O-H, C-H, C = O (ester, amine, ketone, aldehyde), C = C, C = N (vibrational modes of a tetrapyrrole ring) and simply C = N. The FTIR of these bands is fundamental to the investigation of the effect of biochar (BC) treatment on structural changes in the chlorophyll molecules of both plants that were tested. For this, dried leaf of Spinacia oleracia (spinach) and Trigonella corniculata (fenugreek) were selected for FTIR spectral study of chlorophyll associated functional groups. The study's primary goal was to investigate the silent features of infrared (IR) spectra of dried leave samples. The data obtained from the current study also shows that leaf chlorophyll can mask or suppress other molecules' FITR bands, including proteins. In addition, the C = O bands with Mg and the C9 ketonic group of chlorophyll are observed as peaks at1600 (0%BC), 1650 (3%BC) and 1640, or near to1700 (5%BC) in spinach samples. In fenugreek, additional effects are observed in the FTIR spectra of chlorophyll at the major groups of C = C, C = O and C9 of the ketonic groups, and the vibrational bands are more evident at C-H and N-H of the tetrapyrrole ring. It is concluded that C-N bands are more visible in 5% BC treated spinach and fenugreek than in all other treatments. These types of spectra are useful in detecting changes or visibility of functional groups, which are very helpful in supporting biochemical data such as an increase in protein can be detected by more visibility of C-N bands in FTIR spectra.</abstract><cop>San Francisco</cop><pub>Public Library of Science</pub><pmid>34191839</pmid><doi>10.1371/journal.pone.0253390</doi><tpages>e0253390</tpages><orcidid>https://orcid.org/0000-0001-5237-722X</orcidid><orcidid>https://orcid.org/0000-0001-9001-2555</orcidid><orcidid>https://orcid.org/0000-0003-4156-4673</orcidid><oa>free_for_read</oa></addata></record> |
fulltext | fulltext |
identifier | ISSN: 1932-6203 |
ispartof | PloS one, 2021-06, Vol.16 (6), p.e0253390-e0253390 |
issn | 1932-6203 1932-6203 |
language | eng |
recordid | cdi_plos_journals_2546969202 |
source | Full-Text Journals in Chemistry (Open access); DOAJ Directory of Open Access Journals; Public Library of Science (PLoS)(OpenAccess); PubMed Central; EZB Electronic Journals Library |
subjects | Aldehydes Analysis Band spectra Biology and Life Sciences Change detection Charcoal Chlorophyll Cotton Earth Sciences Evaluation Experiments Fenugreek Fourier transforms Functional groups Genetic aspects Growth Heavy metals Hydrocarbons Infrared spectra Infrared spectroscopy Laboratories Leaves Photosynthesis Physical Sciences Pollutants Proteins Research and Analysis Methods Sediment pollution Soil contamination Soil pollution Soil sciences Spinach Spinacia oleracea Trigonella corniculata |
title | Fourier Transform Infrared Spectroscopy vibrational bands study of Spinacia oleracea and Trigonella corniculata under biochar amendment in naturally contaminated soil |
url | https://sfx.bib-bvb.de/sfx_tum?ctx_ver=Z39.88-2004&ctx_enc=info:ofi/enc:UTF-8&ctx_tim=2025-01-01T10%3A03%3A41IST&url_ver=Z39.88-2004&url_ctx_fmt=infofi/fmt:kev:mtx:ctx&rfr_id=info:sid/primo.exlibrisgroup.com:primo3-Article-gale_plos_&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.genre=article&rft.atitle=Fourier%20Transform%20Infrared%20Spectroscopy%20vibrational%20bands%20study%20of%20Spinacia%20oleracea%20and%20Trigonella%20corniculata%20under%20biochar%20amendment%20in%20naturally%20contaminated%20soil&rft.jtitle=PloS%20one&rft.au=Younis,%20Uzma&rft.date=2021-06-30&rft.volume=16&rft.issue=6&rft.spage=e0253390&rft.epage=e0253390&rft.pages=e0253390-e0253390&rft.issn=1932-6203&rft.eissn=1932-6203&rft_id=info:doi/10.1371/journal.pone.0253390&rft_dat=%3Cgale_plos_%3EA666947394%3C/gale_plos_%3E%3Curl%3E%3C/url%3E&disable_directlink=true&sfx.directlink=off&sfx.report_link=0&rft_id=info:oai/&rft_pqid=2546969202&rft_id=info:pmid/34191839&rft_galeid=A666947394&rft_doaj_id=oai_doaj_org_article_a8d4446d83744028a1425d36805409cd&rfr_iscdi=true |