Fourier Transform Infrared Spectroscopy vibrational bands study of Spinacia oleracea and Trigonella corniculata under biochar amendment in naturally contaminated soil

Fourier transform infrared spectroscopy (FTIR) spectroscopy detects functional groups such as vibrational bands like N-H, O-H, C-H, C = O (ester, amine, ketone, aldehyde), C = C, C = N (vibrational modes of a tetrapyrrole ring) and simply C = N. The FTIR of these bands is fundamental to the investig...

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Veröffentlicht in:PloS one 2021-06, Vol.16 (6), p.e0253390-e0253390
Hauptverfasser: Younis, Uzma, Rahi, Ashfaq Ahmad, Danish, Subhan, Ali, Muhammad Arif, Ahmed, Niaz, Datta, Rahul, Fahad, Shah, Holatko, Jiri, Hammerschmiedt, Tereza, Brtnicky, Martin, Zarei, Tayebeh, Baazeem, Alaa, Sabagh, Ayman EL, Glick, Bernard R
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container_title PloS one
container_volume 16
creator Younis, Uzma
Rahi, Ashfaq Ahmad
Danish, Subhan
Ali, Muhammad Arif
Ahmed, Niaz
Datta, Rahul
Fahad, Shah
Holatko, Jiri
Hammerschmiedt, Tereza
Brtnicky, Martin
Zarei, Tayebeh
Baazeem, Alaa
Sabagh, Ayman EL
Glick, Bernard R
description Fourier transform infrared spectroscopy (FTIR) spectroscopy detects functional groups such as vibrational bands like N-H, O-H, C-H, C = O (ester, amine, ketone, aldehyde), C = C, C = N (vibrational modes of a tetrapyrrole ring) and simply C = N. The FTIR of these bands is fundamental to the investigation of the effect of biochar (BC) treatment on structural changes in the chlorophyll molecules of both plants that were tested. For this, dried leaf of Spinacia oleracia (spinach) and Trigonella corniculata (fenugreek) were selected for FTIR spectral study of chlorophyll associated functional groups. The study's primary goal was to investigate the silent features of infrared (IR) spectra of dried leave samples. The data obtained from the current study also shows that leaf chlorophyll can mask or suppress other molecules' FITR bands, including proteins. In addition, the C = O bands with Mg and the C9 ketonic group of chlorophyll are observed as peaks at1600 (0%BC), 1650 (3%BC) and 1640, or near to1700 (5%BC) in spinach samples. In fenugreek, additional effects are observed in the FTIR spectra of chlorophyll at the major groups of C = C, C = O and C9 of the ketonic groups, and the vibrational bands are more evident at C-H and N-H of the tetrapyrrole ring. It is concluded that C-N bands are more visible in 5% BC treated spinach and fenugreek than in all other treatments. These types of spectra are useful in detecting changes or visibility of functional groups, which are very helpful in supporting biochemical data such as an increase in protein can be detected by more visibility of C-N bands in FTIR spectra.
doi_str_mv 10.1371/journal.pone.0253390
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The FTIR of these bands is fundamental to the investigation of the effect of biochar (BC) treatment on structural changes in the chlorophyll molecules of both plants that were tested. For this, dried leaf of Spinacia oleracia (spinach) and Trigonella corniculata (fenugreek) were selected for FTIR spectral study of chlorophyll associated functional groups. The study's primary goal was to investigate the silent features of infrared (IR) spectra of dried leave samples. The data obtained from the current study also shows that leaf chlorophyll can mask or suppress other molecules' FITR bands, including proteins. In addition, the C = O bands with Mg and the C9 ketonic group of chlorophyll are observed as peaks at1600 (0%BC), 1650 (3%BC) and 1640, or near to1700 (5%BC) in spinach samples. In fenugreek, additional effects are observed in the FTIR spectra of chlorophyll at the major groups of C = C, C = O and C9 of the ketonic groups, and the vibrational bands are more evident at C-H and N-H of the tetrapyrrole ring. It is concluded that C-N bands are more visible in 5% BC treated spinach and fenugreek than in all other treatments. 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Allied Health Database (Alumni Edition)</collection><collection>Meteorological &amp; Geoastrophysical Abstracts - Academic</collection><collection>ProQuest Engineering Collection</collection><collection>ProQuest Biological Science Collection</collection><collection>Agriculture Science Database</collection><collection>Health &amp; Medical Collection (Alumni Edition)</collection><collection>Medical Database</collection><collection>Algology Mycology and Protozoology Abstracts (Microbiology C)</collection><collection>Biological Science Database</collection><collection>Engineering Database</collection><collection>Nursing &amp; Allied Health Premium</collection><collection>ProQuest advanced technologies &amp; aerospace journals</collection><collection>ProQuest Advanced Technologies &amp; Aerospace Collection</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Environmental Science Database</collection><collection>Materials science collection</collection><collection>Publicly Available Content Database</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>ProQuest Central China</collection><collection>Engineering collection</collection><collection>Environmental Science Collection</collection><collection>Genetics Abstracts</collection><collection>MEDLINE - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><collection>DOAJ Directory of Open Access Journals</collection><jtitle>PloS one</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Younis, Uzma</au><au>Rahi, Ashfaq Ahmad</au><au>Danish, Subhan</au><au>Ali, Muhammad Arif</au><au>Ahmed, Niaz</au><au>Datta, Rahul</au><au>Fahad, Shah</au><au>Holatko, Jiri</au><au>Hammerschmiedt, Tereza</au><au>Brtnicky, Martin</au><au>Zarei, Tayebeh</au><au>Baazeem, Alaa</au><au>Sabagh, Ayman EL</au><au>Glick, Bernard R</au><au>Farooq, Shahid</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Fourier Transform Infrared Spectroscopy vibrational bands study of Spinacia oleracea and Trigonella corniculata under biochar amendment in naturally contaminated soil</atitle><jtitle>PloS one</jtitle><date>2021-06-30</date><risdate>2021</risdate><volume>16</volume><issue>6</issue><spage>e0253390</spage><epage>e0253390</epage><pages>e0253390-e0253390</pages><issn>1932-6203</issn><eissn>1932-6203</eissn><abstract>Fourier transform infrared spectroscopy (FTIR) spectroscopy detects functional groups such as vibrational bands like N-H, O-H, C-H, C = O (ester, amine, ketone, aldehyde), C = C, C = N (vibrational modes of a tetrapyrrole ring) and simply C = N. The FTIR of these bands is fundamental to the investigation of the effect of biochar (BC) treatment on structural changes in the chlorophyll molecules of both plants that were tested. For this, dried leaf of Spinacia oleracia (spinach) and Trigonella corniculata (fenugreek) were selected for FTIR spectral study of chlorophyll associated functional groups. The study's primary goal was to investigate the silent features of infrared (IR) spectra of dried leave samples. The data obtained from the current study also shows that leaf chlorophyll can mask or suppress other molecules' FITR bands, including proteins. In addition, the C = O bands with Mg and the C9 ketonic group of chlorophyll are observed as peaks at1600 (0%BC), 1650 (3%BC) and 1640, or near to1700 (5%BC) in spinach samples. In fenugreek, additional effects are observed in the FTIR spectra of chlorophyll at the major groups of C = C, C = O and C9 of the ketonic groups, and the vibrational bands are more evident at C-H and N-H of the tetrapyrrole ring. It is concluded that C-N bands are more visible in 5% BC treated spinach and fenugreek than in all other treatments. These types of spectra are useful in detecting changes or visibility of functional groups, which are very helpful in supporting biochemical data such as an increase in protein can be detected by more visibility of C-N bands in FTIR spectra.</abstract><cop>San Francisco</cop><pub>Public Library of Science</pub><pmid>34191839</pmid><doi>10.1371/journal.pone.0253390</doi><tpages>e0253390</tpages><orcidid>https://orcid.org/0000-0001-5237-722X</orcidid><orcidid>https://orcid.org/0000-0001-9001-2555</orcidid><orcidid>https://orcid.org/0000-0003-4156-4673</orcidid><oa>free_for_read</oa></addata></record>
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1932-6203
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source Full-Text Journals in Chemistry (Open access); DOAJ Directory of Open Access Journals; Public Library of Science (PLoS)(OpenAccess); PubMed Central; EZB Electronic Journals Library
subjects Aldehydes
Analysis
Band spectra
Biology and Life Sciences
Change detection
Charcoal
Chlorophyll
Cotton
Earth Sciences
Evaluation
Experiments
Fenugreek
Fourier transforms
Functional groups
Genetic aspects
Growth
Heavy metals
Hydrocarbons
Infrared spectra
Infrared spectroscopy
Laboratories
Leaves
Photosynthesis
Physical Sciences
Pollutants
Proteins
Research and Analysis Methods
Sediment pollution
Soil contamination
Soil pollution
Soil sciences
Spinach
Spinacia oleracea
Trigonella corniculata
title Fourier Transform Infrared Spectroscopy vibrational bands study of Spinacia oleracea and Trigonella corniculata under biochar amendment in naturally contaminated soil
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