Localized prediction of tissue outcome in acute ischemic stroke patients using diffusion- and perfusion-weighted MRI datasets
An accurate prediction of tissue outcome in acute ischemic stroke patients is of high interest for treatment decision making. To date, various machine learning models have been proposed that combine multi-parametric imaging data for this purpose. However, most of these machine learning models were t...
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description | An accurate prediction of tissue outcome in acute ischemic stroke patients is of high interest for treatment decision making. To date, various machine learning models have been proposed that combine multi-parametric imaging data for this purpose. However, most of these machine learning models were trained using voxel information extracted from the whole brain, without taking differences in susceptibility to ischemia into account that exist between brain regions. The aim of this study was to develop and evaluate a local tissue outcome prediction approach, which makes predictions using locally trained machine learning models and thus accounts for regional differences.
Multi-parametric MRI data from 99 acute ischemic stroke patients were used for the development and evaluation of the local tissue outcome prediction approach. Diffusion (ADC) and perfusion parameter maps (CBF, CBV, MTT, Tmax) and corresponding follow-up lesion masks for each patient were registered to the MNI brain atlas. Logistic regression (LR) and random forest (RF) models were trained employing a local approach, which makes predictions using models individually trained for each specific voxel position using the corresponding local data. A global approach, which uses a single model trained using all voxels of the brain, was used for comparison. Tissue outcome predictions resulting from the global and local RF and LR models, as well as a combined (hybrid) approach were quantitatively evaluated and compared using the area under the receiver operating characteristic curve (ROC AUC), the Dice coefficient, and the sensitivity and specificity metrics.
Statistical analysis revealed the highest ROC AUC and Dice values for the hybrid approach. With 0.872 (ROC AUC; LR) and 0.353 (Dice; RF), these values were significantly higher (p < 0.01) than the values of the two other approaches. In addition, the local approach achieved the highest sensitivity of 0.448 (LR). Overall, the hybrid approach was only outperformed in sensitivity (LR) by the local approach and in specificity by both other approaches. However, in these cases the effect sizes were comparatively small.
The results of this study suggest that using locally trained machine learning models can lead to better lesion outcome prediction results compared to a single global machine learning model trained using all voxel information independent of the location in the brain. |
doi_str_mv | 10.1371/journal.pone.0241917 |
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Multi-parametric MRI data from 99 acute ischemic stroke patients were used for the development and evaluation of the local tissue outcome prediction approach. Diffusion (ADC) and perfusion parameter maps (CBF, CBV, MTT, Tmax) and corresponding follow-up lesion masks for each patient were registered to the MNI brain atlas. Logistic regression (LR) and random forest (RF) models were trained employing a local approach, which makes predictions using models individually trained for each specific voxel position using the corresponding local data. A global approach, which uses a single model trained using all voxels of the brain, was used for comparison. Tissue outcome predictions resulting from the global and local RF and LR models, as well as a combined (hybrid) approach were quantitatively evaluated and compared using the area under the receiver operating characteristic curve (ROC AUC), the Dice coefficient, and the sensitivity and specificity metrics.
Statistical analysis revealed the highest ROC AUC and Dice values for the hybrid approach. With 0.872 (ROC AUC; LR) and 0.353 (Dice; RF), these values were significantly higher (p < 0.01) than the values of the two other approaches. In addition, the local approach achieved the highest sensitivity of 0.448 (LR). Overall, the hybrid approach was only outperformed in sensitivity (LR) by the local approach and in specificity by both other approaches. However, in these cases the effect sizes were comparatively small.
The results of this study suggest that using locally trained machine learning models can lead to better lesion outcome prediction results compared to a single global machine learning model trained using all voxel information independent of the location in the brain.</description><identifier>ISSN: 1932-6203</identifier><identifier>EISSN: 1932-6203</identifier><identifier>DOI: 10.1371/journal.pone.0241917</identifier><identifier>PMID: 33152045</identifier><language>eng</language><publisher>United States: Public Library of Science</publisher><subject>Adult ; Aged ; Area Under Curve ; Biology and Life Sciences ; Blood ; Brain ; Brain - physiopathology ; Brain Ischemia - physiopathology ; Cerebrospinal fluid ; Computer and Information Sciences ; Datasets ; Decision making ; Decision trees ; Development and progression ; Diagnosis ; Diffusion ; Diffusion Magnetic Resonance Imaging - methods ; Female ; Forecasting - methods ; Forecasts and trends ; Gene mapping ; Health aspects ; Humans ; Ischemia ; Ischemic Stroke - diagnostic imaging ; Learning algorithms ; Lesions ; Logistic Models ; Machine Learning ; Magnetic Resonance Angiography - methods ; Magnetic resonance imaging ; Magnetic Resonance Imaging - methods ; Male ; Medicine and Health Sciences ; Middle Aged ; Neuroimaging ; Patient outcomes ; Perfusion ; Physical Sciences ; Predictions ; Prognosis ; Regression analysis ; Research and Analysis Methods ; ROC Curve ; Sensitivity and Specificity ; Statistical analysis ; Stroke ; Stroke - physiopathology ; Tissues</subject><ispartof>PloS one, 2020-11, Vol.15 (11), p.e0241917</ispartof><rights>COPYRIGHT 2020 Public Library of Science</rights><rights>2020 Grosser et al. This is an open access article distributed under the terms of the Creative Commons Attribution License: http://creativecommons.org/licenses/by/4.0/ (the “License”), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License.</rights><rights>2020 Grosser et al 2020 Grosser et al</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c692t-70a9f19d350986143364cf5b1444a5f870d32672b051331afde467034ee1a53d3</citedby><cites>FETCH-LOGICAL-c692t-70a9f19d350986143364cf5b1444a5f870d32672b051331afde467034ee1a53d3</cites><orcidid>0000-0001-7139-3284</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC7643995/pdf/$$EPDF$$P50$$Gpubmedcentral$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC7643995/$$EHTML$$P50$$Gpubmedcentral$$Hfree_for_read</linktohtml><link.rule.ids>230,314,723,776,780,860,881,2096,2915,23845,27901,27902,53766,53768,79343,79344</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/33152045$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><contributor>Jiang, Quan</contributor><creatorcontrib>Grosser, Malte</creatorcontrib><creatorcontrib>Gellißen, Susanne</creatorcontrib><creatorcontrib>Borchert, Patrick</creatorcontrib><creatorcontrib>Sedlacik, Jan</creatorcontrib><creatorcontrib>Nawabi, Jawed</creatorcontrib><creatorcontrib>Fiehler, Jens</creatorcontrib><creatorcontrib>Forkert, Nils D</creatorcontrib><title>Localized prediction of tissue outcome in acute ischemic stroke patients using diffusion- and perfusion-weighted MRI datasets</title><title>PloS one</title><addtitle>PLoS One</addtitle><description>An accurate prediction of tissue outcome in acute ischemic stroke patients is of high interest for treatment decision making. To date, various machine learning models have been proposed that combine multi-parametric imaging data for this purpose. However, most of these machine learning models were trained using voxel information extracted from the whole brain, without taking differences in susceptibility to ischemia into account that exist between brain regions. The aim of this study was to develop and evaluate a local tissue outcome prediction approach, which makes predictions using locally trained machine learning models and thus accounts for regional differences.
Multi-parametric MRI data from 99 acute ischemic stroke patients were used for the development and evaluation of the local tissue outcome prediction approach. Diffusion (ADC) and perfusion parameter maps (CBF, CBV, MTT, Tmax) and corresponding follow-up lesion masks for each patient were registered to the MNI brain atlas. Logistic regression (LR) and random forest (RF) models were trained employing a local approach, which makes predictions using models individually trained for each specific voxel position using the corresponding local data. A global approach, which uses a single model trained using all voxels of the brain, was used for comparison. Tissue outcome predictions resulting from the global and local RF and LR models, as well as a combined (hybrid) approach were quantitatively evaluated and compared using the area under the receiver operating characteristic curve (ROC AUC), the Dice coefficient, and the sensitivity and specificity metrics.
Statistical analysis revealed the highest ROC AUC and Dice values for the hybrid approach. With 0.872 (ROC AUC; LR) and 0.353 (Dice; RF), these values were significantly higher (p < 0.01) than the values of the two other approaches. In addition, the local approach achieved the highest sensitivity of 0.448 (LR). Overall, the hybrid approach was only outperformed in sensitivity (LR) by the local approach and in specificity by both other approaches. However, in these cases the effect sizes were comparatively small.
The results of this study suggest that using locally trained machine learning models can lead to better lesion outcome prediction results compared to a single global machine learning model trained using all voxel information independent of the location in the brain.</description><subject>Adult</subject><subject>Aged</subject><subject>Area Under Curve</subject><subject>Biology and Life Sciences</subject><subject>Blood</subject><subject>Brain</subject><subject>Brain - physiopathology</subject><subject>Brain Ischemia - physiopathology</subject><subject>Cerebrospinal fluid</subject><subject>Computer and Information Sciences</subject><subject>Datasets</subject><subject>Decision making</subject><subject>Decision trees</subject><subject>Development and progression</subject><subject>Diagnosis</subject><subject>Diffusion</subject><subject>Diffusion Magnetic Resonance Imaging - methods</subject><subject>Female</subject><subject>Forecasting - methods</subject><subject>Forecasts and trends</subject><subject>Gene mapping</subject><subject>Health aspects</subject><subject>Humans</subject><subject>Ischemia</subject><subject>Ischemic Stroke - diagnostic imaging</subject><subject>Learning algorithms</subject><subject>Lesions</subject><subject>Logistic Models</subject><subject>Machine Learning</subject><subject>Magnetic Resonance Angiography - methods</subject><subject>Magnetic resonance imaging</subject><subject>Magnetic Resonance Imaging - methods</subject><subject>Male</subject><subject>Medicine and Health Sciences</subject><subject>Middle Aged</subject><subject>Neuroimaging</subject><subject>Patient outcomes</subject><subject>Perfusion</subject><subject>Physical Sciences</subject><subject>Predictions</subject><subject>Prognosis</subject><subject>Regression analysis</subject><subject>Research and Analysis Methods</subject><subject>ROC Curve</subject><subject>Sensitivity and Specificity</subject><subject>Statistical analysis</subject><subject>Stroke</subject><subject>Stroke - physiopathology</subject><subject>Tissues</subject><issn>1932-6203</issn><issn>1932-6203</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2020</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><sourceid>BENPR</sourceid><sourceid>DOA</sourceid><recordid>eNqNk9tu1DAQhiMEoqXwBggiISG42MWO7SS-QaoqDistqlQOt9bEHu-6ZOMldjhJvDveblptUC9QLjJxvvnH89uTZY8pmVNW0VeXfug7aOdb3-GcFJxKWt3JjqlkxawsCLt7EB9lD0K4JESwuizvZ0eMUVEQLo6zP0uvoXW_0eTbHo3T0fku9zaPLoQBcz9E7TeYuy4HPcQUBL3GjdN5iL3_ivkWosMuhnwIrlvlxlmbIt_NcuiSJvbj5w90q3VMZT5cLHIDEQLG8DC7Z6EN-Gh8n2Sf3775dPZ-tjx_tzg7Xc50KYs4qwhIS6Vhgsi6pJyxkmsrGso5B2HrihhWlFXREEFTa2AN8rIijCNSEMywk-zpXnfb-qBG54IquKhkyZmoErHYE8bDpdr2bgP9L-XBqasF368U9NHpFlWtq6YoSsBa1txiA40WUhgqwEhZWkhar8dqQ7NBo5M9PbQT0emfzq3Vyn9XVdqLlCIJvBgFev9twBDVJtmObQsd-uFq33XqTtQsoc_-QW_vbqRWkBpwnfWprt6JqtOSk4pUVPJEzW-h0mN2B56umXVpfZLwcpKQmIg_4wqGENTi48X_s-dfpuzzA3aN0MZ18O2wu5thCvI9qHsfQo_2xmRK1G5Krt1QuylR45SktCeHB3STdD0W7C_DjA3R</recordid><startdate>20201105</startdate><enddate>20201105</enddate><creator>Grosser, Malte</creator><creator>Gellißen, Susanne</creator><creator>Borchert, Patrick</creator><creator>Sedlacik, Jan</creator><creator>Nawabi, Jawed</creator><creator>Fiehler, Jens</creator><creator>Forkert, Nils D</creator><general>Public Library of Science</general><general>Public Library of Science (PLoS)</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>IOV</scope><scope>ISR</scope><scope>3V.</scope><scope>7QG</scope><scope>7QL</scope><scope>7QO</scope><scope>7RV</scope><scope>7SN</scope><scope>7SS</scope><scope>7T5</scope><scope>7TG</scope><scope>7TM</scope><scope>7U9</scope><scope>7X2</scope><scope>7X7</scope><scope>7XB</scope><scope>88E</scope><scope>8AO</scope><scope>8C1</scope><scope>8FD</scope><scope>8FE</scope><scope>8FG</scope><scope>8FH</scope><scope>8FI</scope><scope>8FJ</scope><scope>8FK</scope><scope>ABJCF</scope><scope>ABUWG</scope><scope>AEUYN</scope><scope>AFKRA</scope><scope>ARAPS</scope><scope>ATCPS</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BGLVJ</scope><scope>BHPHI</scope><scope>C1K</scope><scope>CCPQU</scope><scope>D1I</scope><scope>DWQXO</scope><scope>FR3</scope><scope>FYUFA</scope><scope>GHDGH</scope><scope>GNUQQ</scope><scope>H94</scope><scope>HCIFZ</scope><scope>K9.</scope><scope>KB.</scope><scope>KB0</scope><scope>KL.</scope><scope>L6V</scope><scope>LK8</scope><scope>M0K</scope><scope>M0S</scope><scope>M1P</scope><scope>M7N</scope><scope>M7P</scope><scope>M7S</scope><scope>NAPCQ</scope><scope>P5Z</scope><scope>P62</scope><scope>P64</scope><scope>PATMY</scope><scope>PDBOC</scope><scope>PIMPY</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>PRINS</scope><scope>PTHSS</scope><scope>PYCSY</scope><scope>RC3</scope><scope>7X8</scope><scope>5PM</scope><scope>DOA</scope><orcidid>https://orcid.org/0000-0001-7139-3284</orcidid></search><sort><creationdate>20201105</creationdate><title>Localized prediction of tissue outcome in acute ischemic stroke patients using diffusion- and perfusion-weighted MRI datasets</title><author>Grosser, Malte ; Gellißen, Susanne ; Borchert, Patrick ; Sedlacik, Jan ; Nawabi, Jawed ; Fiehler, Jens ; Forkert, Nils D</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c692t-70a9f19d350986143364cf5b1444a5f870d32672b051331afde467034ee1a53d3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2020</creationdate><topic>Adult</topic><topic>Aged</topic><topic>Area Under Curve</topic><topic>Biology and Life Sciences</topic><topic>Blood</topic><topic>Brain</topic><topic>Brain - physiopathology</topic><topic>Brain Ischemia - physiopathology</topic><topic>Cerebrospinal fluid</topic><topic>Computer and Information Sciences</topic><topic>Datasets</topic><topic>Decision making</topic><topic>Decision trees</topic><topic>Development and progression</topic><topic>Diagnosis</topic><topic>Diffusion</topic><topic>Diffusion Magnetic Resonance Imaging - methods</topic><topic>Female</topic><topic>Forecasting - methods</topic><topic>Forecasts and trends</topic><topic>Gene mapping</topic><topic>Health aspects</topic><topic>Humans</topic><topic>Ischemia</topic><topic>Ischemic Stroke - diagnostic imaging</topic><topic>Learning algorithms</topic><topic>Lesions</topic><topic>Logistic Models</topic><topic>Machine Learning</topic><topic>Magnetic Resonance Angiography - methods</topic><topic>Magnetic resonance imaging</topic><topic>Magnetic Resonance Imaging - methods</topic><topic>Male</topic><topic>Medicine and Health Sciences</topic><topic>Middle Aged</topic><topic>Neuroimaging</topic><topic>Patient outcomes</topic><topic>Perfusion</topic><topic>Physical Sciences</topic><topic>Predictions</topic><topic>Prognosis</topic><topic>Regression analysis</topic><topic>Research and Analysis Methods</topic><topic>ROC Curve</topic><topic>Sensitivity and Specificity</topic><topic>Statistical analysis</topic><topic>Stroke</topic><topic>Stroke - 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Academic</collection><collection>PubMed Central (Full Participant titles)</collection><collection>DOAJ Directory of Open Access Journals</collection><jtitle>PloS one</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Grosser, Malte</au><au>Gellißen, Susanne</au><au>Borchert, Patrick</au><au>Sedlacik, Jan</au><au>Nawabi, Jawed</au><au>Fiehler, Jens</au><au>Forkert, Nils D</au><au>Jiang, Quan</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Localized prediction of tissue outcome in acute ischemic stroke patients using diffusion- and perfusion-weighted MRI datasets</atitle><jtitle>PloS one</jtitle><addtitle>PLoS One</addtitle><date>2020-11-05</date><risdate>2020</risdate><volume>15</volume><issue>11</issue><spage>e0241917</spage><pages>e0241917-</pages><issn>1932-6203</issn><eissn>1932-6203</eissn><abstract>An accurate prediction of tissue outcome in acute ischemic stroke patients is of high interest for treatment decision making. To date, various machine learning models have been proposed that combine multi-parametric imaging data for this purpose. However, most of these machine learning models were trained using voxel information extracted from the whole brain, without taking differences in susceptibility to ischemia into account that exist between brain regions. The aim of this study was to develop and evaluate a local tissue outcome prediction approach, which makes predictions using locally trained machine learning models and thus accounts for regional differences.
Multi-parametric MRI data from 99 acute ischemic stroke patients were used for the development and evaluation of the local tissue outcome prediction approach. Diffusion (ADC) and perfusion parameter maps (CBF, CBV, MTT, Tmax) and corresponding follow-up lesion masks for each patient were registered to the MNI brain atlas. Logistic regression (LR) and random forest (RF) models were trained employing a local approach, which makes predictions using models individually trained for each specific voxel position using the corresponding local data. A global approach, which uses a single model trained using all voxels of the brain, was used for comparison. Tissue outcome predictions resulting from the global and local RF and LR models, as well as a combined (hybrid) approach were quantitatively evaluated and compared using the area under the receiver operating characteristic curve (ROC AUC), the Dice coefficient, and the sensitivity and specificity metrics.
Statistical analysis revealed the highest ROC AUC and Dice values for the hybrid approach. With 0.872 (ROC AUC; LR) and 0.353 (Dice; RF), these values were significantly higher (p < 0.01) than the values of the two other approaches. In addition, the local approach achieved the highest sensitivity of 0.448 (LR). Overall, the hybrid approach was only outperformed in sensitivity (LR) by the local approach and in specificity by both other approaches. However, in these cases the effect sizes were comparatively small.
The results of this study suggest that using locally trained machine learning models can lead to better lesion outcome prediction results compared to a single global machine learning model trained using all voxel information independent of the location in the brain.</abstract><cop>United States</cop><pub>Public Library of Science</pub><pmid>33152045</pmid><doi>10.1371/journal.pone.0241917</doi><tpages>e0241917</tpages><orcidid>https://orcid.org/0000-0001-7139-3284</orcidid><oa>free_for_read</oa></addata></record> |
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source | MEDLINE; DOAJ Directory of Open Access Journals; Elektronische Zeitschriftenbibliothek - Frei zugängliche E-Journals; PubMed Central; Free Full-Text Journals in Chemistry; Public Library of Science (PLoS) |
subjects | Adult Aged Area Under Curve Biology and Life Sciences Blood Brain Brain - physiopathology Brain Ischemia - physiopathology Cerebrospinal fluid Computer and Information Sciences Datasets Decision making Decision trees Development and progression Diagnosis Diffusion Diffusion Magnetic Resonance Imaging - methods Female Forecasting - methods Forecasts and trends Gene mapping Health aspects Humans Ischemia Ischemic Stroke - diagnostic imaging Learning algorithms Lesions Logistic Models Machine Learning Magnetic Resonance Angiography - methods Magnetic resonance imaging Magnetic Resonance Imaging - methods Male Medicine and Health Sciences Middle Aged Neuroimaging Patient outcomes Perfusion Physical Sciences Predictions Prognosis Regression analysis Research and Analysis Methods ROC Curve Sensitivity and Specificity Statistical analysis Stroke Stroke - physiopathology Tissues |
title | Localized prediction of tissue outcome in acute ischemic stroke patients using diffusion- and perfusion-weighted MRI datasets |
url | https://sfx.bib-bvb.de/sfx_tum?ctx_ver=Z39.88-2004&ctx_enc=info:ofi/enc:UTF-8&ctx_tim=2025-01-30T20%3A33%3A47IST&url_ver=Z39.88-2004&url_ctx_fmt=infofi/fmt:kev:mtx:ctx&rfr_id=info:sid/primo.exlibrisgroup.com:primo3-Article-gale_plos_&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.genre=article&rft.atitle=Localized%20prediction%20of%20tissue%20outcome%20in%20acute%20ischemic%20stroke%20patients%20using%20diffusion-%20and%20perfusion-weighted%20MRI%20datasets&rft.jtitle=PloS%20one&rft.au=Grosser,%20Malte&rft.date=2020-11-05&rft.volume=15&rft.issue=11&rft.spage=e0241917&rft.pages=e0241917-&rft.issn=1932-6203&rft.eissn=1932-6203&rft_id=info:doi/10.1371/journal.pone.0241917&rft_dat=%3Cgale_plos_%3EA640707194%3C/gale_plos_%3E%3Curl%3E%3C/url%3E&disable_directlink=true&sfx.directlink=off&sfx.report_link=0&rft_id=info:oai/&rft_pqid=2457964357&rft_id=info:pmid/33152045&rft_galeid=A640707194&rft_doaj_id=oai_doaj_org_article_8c7b226ae8984febabc595d15ad996fa&rfr_iscdi=true |