Phylogenetic background and habitat drive the genetic diversification of Escherichia coli

Escherichia coli is mostly a commensal of birds and mammals, including humans, where it can act as an opportunistic pathogen. It is also found in water and sediments. We investigated the phylogeny, genetic diversification, and habitat-association of 1,294 isolates representative of the phylogenetic...

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Veröffentlicht in:	PLoS genetics 2020-06, Vol.16 (6), p.e1008866-e1008866
Hauptverfasser:	Touchon, Marie, Perrin, Amandine, de Sousa, Jorge André Moura, Vangchhia, Belinda, Burn, Samantha, O'Brien, Claire L, Denamur, Erick, Gordon, David, Rocha, Eduardo PC, Bomblies, Kirsten, Didelot, Xavier
Format:	Artikel
Sprache:	eng
Schlagworte:	Adaptation Animals Biodiversity Biology Biology and Life Sciences Clinical isolates Cloning Computer and Information Sciences Divergence E coli Ecology Environmental aspects Epidemiology Escherichia coli Evolution Funding Gene flow Gene frequency Gene transfer Genes Genetic aspects Genetic diversity Genetic research Genomes Genomics Habitats Horizontal transfer Life Sciences Medicine and Health Sciences Microbiology and Parasitology Opportunist infection Phylogenetics Phylogeny Population genetics Populations and Evolution Sediments Software Species Virulence
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