Phylogenomics indicates the "living fossil" Isoetes diversified in the Cenozoic
The fossil record provides an invaluable insight into the temporal origins of extant lineages of organisms. However, establishing the relationships between fossils and extant lineages can be difficult in groups with low rates of morphological change over time. Molecular dating can potentially circum...
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| Veröffentlicht in: | PloS one 2020-06, Vol.15 (6), p.e0227525-e0227525 |
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| creator | Wood, Daniel Besnard, Guillaume Beerling, David J Osborne, Colin P Christin, Pascal-Antoine |
| description | The fossil record provides an invaluable insight into the temporal origins of extant lineages of organisms. However, establishing the relationships between fossils and extant lineages can be difficult in groups with low rates of morphological change over time. Molecular dating can potentially circumvent this issue by allowing distant fossils to act as calibration points, but rate variation across large evolutionary scales can bias such analyses. In this study, we apply multiple dating methods to genome-wide datasets to infer the origin of extant species of Isoetes, a group of mostly aquatic and semi-aquatic isoetalean lycopsids, which closely resemble fossil forms dating back to the Triassic. Rate variation observed in chloroplast genomes hampers accurate dating, but genome-wide nuclear markers place the origin of extant diversity within this group in the mid-Paleogene, 45-60 million years ago. Our genomic analyses coupled with a careful evaluation of the fossil record indicate that despite resembling forms from the Triassic, extant Isoetes species do not represent the remnants of an ancient and widespread group, but instead have spread around the globe in the relatively recent past. |
| doi_str_mv | 10.1371/journal.pone.0227525 |
| format | Article |
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Our genomic analyses coupled with a careful evaluation of the fossil record indicate that despite resembling forms from the Triassic, extant Isoetes species do not represent the remnants of an ancient and widespread group, but instead have spread around the globe in the relatively recent past.</description><identifier>ISSN: 1932-6203</identifier><identifier>EISSN: 1932-6203</identifier><identifier>DOI: 10.1371/journal.pone.0227525</identifier><identifier>PMID: 32555586</identifier><language>eng</language><publisher>United States: Public Library of Science</publisher><subject>Analysis ; Biodiversity ; Biological Evolution ; Biology and Life Sciences ; Calibration ; Cenozoic ; Cenozoic Era ; Chloroplasts ; Chloroplasts - genetics ; Computer and Information Sciences ; Dating ; Dating techniques ; Earth Sciences ; Environmental Sciences ; Evolutionary genetics ; Fossils ; Gene Expression Profiling ; Genetic aspects ; Genetic Variation ; Genomes ; Genomic analysis ; Genomics ; Isoetes ; Life Sciences ; Living fossils ; Morphology ; Natural history ; Paleogene ; Phylogenetics ; Phylogeny ; Plant phylogeny ; Plant sciences ; Quillworts ; Software ; Tracheophyta - genetics ; Triassic</subject><ispartof>PloS one, 2020-06, Vol.15 (6), p.e0227525-e0227525</ispartof><rights>COPYRIGHT 2020 Public Library of Science</rights><rights>2020 Wood et al. 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However, establishing the relationships between fossils and extant lineages can be difficult in groups with low rates of morphological change over time. Molecular dating can potentially circumvent this issue by allowing distant fossils to act as calibration points, but rate variation across large evolutionary scales can bias such analyses. In this study, we apply multiple dating methods to genome-wide datasets to infer the origin of extant species of Isoetes, a group of mostly aquatic and semi-aquatic isoetalean lycopsids, which closely resemble fossil forms dating back to the Triassic. Rate variation observed in chloroplast genomes hampers accurate dating, but genome-wide nuclear markers place the origin of extant diversity within this group in the mid-Paleogene, 45-60 million years ago. 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However, establishing the relationships between fossils and extant lineages can be difficult in groups with low rates of morphological change over time. Molecular dating can potentially circumvent this issue by allowing distant fossils to act as calibration points, but rate variation across large evolutionary scales can bias such analyses. In this study, we apply multiple dating methods to genome-wide datasets to infer the origin of extant species of Isoetes, a group of mostly aquatic and semi-aquatic isoetalean lycopsids, which closely resemble fossil forms dating back to the Triassic. Rate variation observed in chloroplast genomes hampers accurate dating, but genome-wide nuclear markers place the origin of extant diversity within this group in the mid-Paleogene, 45-60 million years ago. 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| subjects | Analysis Biodiversity Biological Evolution Biology and Life Sciences Calibration Cenozoic Cenozoic Era Chloroplasts Chloroplasts - genetics Computer and Information Sciences Dating Dating techniques Earth Sciences Environmental Sciences Evolutionary genetics Fossils Gene Expression Profiling Genetic aspects Genetic Variation Genomes Genomic analysis Genomics Isoetes Life Sciences Living fossils Morphology Natural history Paleogene Phylogenetics Phylogeny Plant phylogeny Plant sciences Quillworts Software Tracheophyta - genetics Triassic |
| title | Phylogenomics indicates the "living fossil" Isoetes diversified in the Cenozoic |
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