Genome-wide identification and expression analysis of jasmonate ZIM domain gene family in tuber mustard (Brassica juncea var. tumida)
Tuber mustard, which is the raw material of Fuling pickle, is a crop with great economic value. However, during growth and development, tuber mustard is frequently attacked by the pathogen Plasmodiophora brassicae and frequently experiences salinity stress. Jasmonic acid (JA) is a hormone related to...
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description | Tuber mustard, which is the raw material of Fuling pickle, is a crop with great economic value. However, during growth and development, tuber mustard is frequently attacked by the pathogen Plasmodiophora brassicae and frequently experiences salinity stress. Jasmonic acid (JA) is a hormone related to plant resistance to biotic and abiotic stress. Jasmonate ZIM domain proteins (JAZs) are crucial components of the JA signaling pathway and play important roles in plant responses to biotic and abiotic stress. To date, no information is available about the characteristics of the JAZ family genes in tuber mustard. Here, 38 BjJAZ genes were identified in the whole genome of tuber mustard. The BjJAZ genes are located on 17 of 18 chromosomes in the tuber mustard genome. The gene structures and protein motifs of the BjJAZ genes are conserved between tuber mustard and Arabidopsis. The results of qRT-PCR analysis showed that BjuA030800 was specifically expressed in root, and BjuA007483 was specifically expressed in leaf. In addition, 13 BjJAZ genes were transiently induced by P. brassicae at 12 h, and 7 BjJAZ genes were induced by salt stress from 12 to 24 h. These results provide valuable information for further studies on the role of BjJAZ genes in the regulation of plant growth and development and in the response to biotic and abiotic stress. |
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However, during growth and development, tuber mustard is frequently attacked by the pathogen Plasmodiophora brassicae and frequently experiences salinity stress. Jasmonic acid (JA) is a hormone related to plant resistance to biotic and abiotic stress. Jasmonate ZIM domain proteins (JAZs) are crucial components of the JA signaling pathway and play important roles in plant responses to biotic and abiotic stress. To date, no information is available about the characteristics of the JAZ family genes in tuber mustard. Here, 38 BjJAZ genes were identified in the whole genome of tuber mustard. The BjJAZ genes are located on 17 of 18 chromosomes in the tuber mustard genome. The gene structures and protein motifs of the BjJAZ genes are conserved between tuber mustard and Arabidopsis. The results of qRT-PCR analysis showed that BjuA030800 was specifically expressed in root, and BjuA007483 was specifically expressed in leaf. In addition, 13 BjJAZ genes were transiently induced by P. brassicae at 12 h, and 7 BjJAZ genes were induced by salt stress from 12 to 24 h. These results provide valuable information for further studies on the role of BjJAZ genes in the regulation of plant growth and development and in the response to biotic and abiotic stress.</description><identifier>ISSN: 1932-6203</identifier><identifier>EISSN: 1932-6203</identifier><identifier>DOI: 10.1371/journal.pone.0234738</identifier><identifier>PMID: 32544205</identifier><language>eng</language><publisher>San Francisco: Public Library of Science</publisher><subject>Abiotic stress ; Analysis ; Biology and Life Sciences ; Biotechnology ; Brassica ; Brassicaceae ; Brassica juncea tumida ; Chromosomes ; Ecology and Environmental Sciences ; Engineering and Technology ; Gene expression ; Gene regulation ; Genes ; Genetic aspects ; Genomes ; Jasmonates ; Jasmonic acid ; Life sciences ; Mustard ; Pathogens ; Physiological aspects ; Plant growth ; Plant resistance ; Plasmodiophora brassicae ; Proteins ; Research and Analysis Methods ; Rice ; Salinity ; Signal transduction ; Stress</subject><ispartof>PloS one, 2020-06, Vol.15 (6), p.e0234738-e0234738</ispartof><rights>COPYRIGHT 2020 Public Library of Science</rights><rights>2020 Cai et al. This is an open access article distributed under the terms of the Creative Commons Attribution License: http://creativecommons.org/licenses/by/4.0/ (the “License”), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License.</rights><rights>2020 Cai et al 2020 Cai et al</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c669t-9f61ad35734efcf10548c4ff6fbf4fbfcc050fc7424c22ac7816eac5f82780713</citedby><cites>FETCH-LOGICAL-c669t-9f61ad35734efcf10548c4ff6fbf4fbfcc050fc7424c22ac7816eac5f82780713</cites><orcidid>0000-0002-7661-2682</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC7297370/pdf/$$EPDF$$P50$$Gpubmedcentral$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC7297370/$$EHTML$$P50$$Gpubmedcentral$$Hfree_for_read</linktohtml><link.rule.ids>230,314,727,780,784,864,885,2102,2928,23866,27924,27925,53791,53793</link.rule.ids></links><search><contributor>Li, Maoteng</contributor><creatorcontrib>Cai, Zhaoming</creatorcontrib><creatorcontrib>Chen, Yuanqing</creatorcontrib><creatorcontrib>Liao, Jingjing</creatorcontrib><creatorcontrib>Wang, Diandong</creatorcontrib><title>Genome-wide identification and expression analysis of jasmonate ZIM domain gene family in tuber mustard (Brassica juncea var. tumida)</title><title>PloS one</title><description>Tuber mustard, which is the raw material of Fuling pickle, is a crop with great economic value. However, during growth and development, tuber mustard is frequently attacked by the pathogen Plasmodiophora brassicae and frequently experiences salinity stress. Jasmonic acid (JA) is a hormone related to plant resistance to biotic and abiotic stress. Jasmonate ZIM domain proteins (JAZs) are crucial components of the JA signaling pathway and play important roles in plant responses to biotic and abiotic stress. To date, no information is available about the characteristics of the JAZ family genes in tuber mustard. Here, 38 BjJAZ genes were identified in the whole genome of tuber mustard. The BjJAZ genes are located on 17 of 18 chromosomes in the tuber mustard genome. The gene structures and protein motifs of the BjJAZ genes are conserved between tuber mustard and Arabidopsis. The results of qRT-PCR analysis showed that BjuA030800 was specifically expressed in root, and BjuA007483 was specifically expressed in leaf. In addition, 13 BjJAZ genes were transiently induced by P. brassicae at 12 h, and 7 BjJAZ genes were induced by salt stress from 12 to 24 h. These results provide valuable information for further studies on the role of BjJAZ genes in the regulation of plant growth and development and in the response to biotic and abiotic stress.</description><subject>Abiotic stress</subject><subject>Analysis</subject><subject>Biology and Life Sciences</subject><subject>Biotechnology</subject><subject>Brassica</subject><subject>Brassicaceae</subject><subject>Brassica juncea tumida</subject><subject>Chromosomes</subject><subject>Ecology and Environmental Sciences</subject><subject>Engineering and Technology</subject><subject>Gene expression</subject><subject>Gene regulation</subject><subject>Genes</subject><subject>Genetic aspects</subject><subject>Genomes</subject><subject>Jasmonates</subject><subject>Jasmonic acid</subject><subject>Life sciences</subject><subject>Mustard</subject><subject>Pathogens</subject><subject>Physiological aspects</subject><subject>Plant growth</subject><subject>Plant resistance</subject><subject>Plasmodiophora 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identification and expression analysis of jasmonate ZIM domain gene family in tuber mustard (Brassica juncea var. tumida)</title><author>Cai, Zhaoming ; Chen, Yuanqing ; Liao, Jingjing ; Wang, Diandong</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c669t-9f61ad35734efcf10548c4ff6fbf4fbfcc050fc7424c22ac7816eac5f82780713</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2020</creationdate><topic>Abiotic stress</topic><topic>Analysis</topic><topic>Biology and Life Sciences</topic><topic>Biotechnology</topic><topic>Brassica</topic><topic>Brassicaceae</topic><topic>Brassica juncea tumida</topic><topic>Chromosomes</topic><topic>Ecology and Environmental Sciences</topic><topic>Engineering and Technology</topic><topic>Gene expression</topic><topic>Gene regulation</topic><topic>Genes</topic><topic>Genetic aspects</topic><topic>Genomes</topic><topic>Jasmonates</topic><topic>Jasmonic acid</topic><topic>Life sciences</topic><topic>Mustard</topic><topic>Pathogens</topic><topic>Physiological aspects</topic><topic>Plant growth</topic><topic>Plant resistance</topic><topic>Plasmodiophora brassicae</topic><topic>Proteins</topic><topic>Research and Analysis Methods</topic><topic>Rice</topic><topic>Salinity</topic><topic>Signal transduction</topic><topic>Stress</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Cai, Zhaoming</creatorcontrib><creatorcontrib>Chen, Yuanqing</creatorcontrib><creatorcontrib>Liao, Jingjing</creatorcontrib><creatorcontrib>Wang, Diandong</creatorcontrib><collection>CrossRef</collection><collection>Gale In Context: Opposing Viewpoints</collection><collection>Gale In Context: Science</collection><collection>ProQuest Central (Corporate)</collection><collection>Animal Behavior Abstracts</collection><collection>Bacteriology Abstracts (Microbiology B)</collection><collection>Biotechnology Research 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Journals</collection><jtitle>PloS one</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Cai, Zhaoming</au><au>Chen, Yuanqing</au><au>Liao, Jingjing</au><au>Wang, Diandong</au><au>Li, Maoteng</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Genome-wide identification and expression analysis of jasmonate ZIM domain gene family in tuber mustard (Brassica juncea var. tumida)</atitle><jtitle>PloS one</jtitle><date>2020-06-16</date><risdate>2020</risdate><volume>15</volume><issue>6</issue><spage>e0234738</spage><epage>e0234738</epage><pages>e0234738-e0234738</pages><issn>1932-6203</issn><eissn>1932-6203</eissn><abstract>Tuber mustard, which is the raw material of Fuling pickle, is a crop with great economic value. However, during growth and development, tuber mustard is frequently attacked by the pathogen Plasmodiophora brassicae and frequently experiences salinity stress. Jasmonic acid (JA) is a hormone related to plant resistance to biotic and abiotic stress. Jasmonate ZIM domain proteins (JAZs) are crucial components of the JA signaling pathway and play important roles in plant responses to biotic and abiotic stress. To date, no information is available about the characteristics of the JAZ family genes in tuber mustard. Here, 38 BjJAZ genes were identified in the whole genome of tuber mustard. The BjJAZ genes are located on 17 of 18 chromosomes in the tuber mustard genome. The gene structures and protein motifs of the BjJAZ genes are conserved between tuber mustard and Arabidopsis. The results of qRT-PCR analysis showed that BjuA030800 was specifically expressed in root, and BjuA007483 was specifically expressed in leaf. In addition, 13 BjJAZ genes were transiently induced by P. brassicae at 12 h, and 7 BjJAZ genes were induced by salt stress from 12 to 24 h. These results provide valuable information for further studies on the role of BjJAZ genes in the regulation of plant growth and development and in the response to biotic and abiotic stress.</abstract><cop>San Francisco</cop><pub>Public Library of Science</pub><pmid>32544205</pmid><doi>10.1371/journal.pone.0234738</doi><tpages>e0234738</tpages><orcidid>https://orcid.org/0000-0002-7661-2682</orcidid><oa>free_for_read</oa></addata></record> |
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subjects | Abiotic stress Analysis Biology and Life Sciences Biotechnology Brassica Brassicaceae Brassica juncea tumida Chromosomes Ecology and Environmental Sciences Engineering and Technology Gene expression Gene regulation Genes Genetic aspects Genomes Jasmonates Jasmonic acid Life sciences Mustard Pathogens Physiological aspects Plant growth Plant resistance Plasmodiophora brassicae Proteins Research and Analysis Methods Rice Salinity Signal transduction Stress |
title | Genome-wide identification and expression analysis of jasmonate ZIM domain gene family in tuber mustard (Brassica juncea var. tumida) |
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