Enabling animal rabies diagnostic in low-access areas: Sensitivity and specificity of a molecular diagnostic test from cerebral tissue dried on filter paper
Rabies is a lethal zoonotic encephalomyelitis that causes an estimated 59,000 human deaths yearly worldwide. Although developing countries of Asia and Africa bear the heaviest burden, surveillance and disease detection in these countries is often hampered by the absence of local laboratories able to...
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Veröffentlicht in: | PLoS neglected tropical diseases 2020-03, Vol.14 (3), p.e0008116-e0008116 |
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creator | Rasolonjatovo, Felana Suzah Guis, Hélène Rajeev, Malavika Dacheux, Laurent Arivony Nomenjanahary, Lalaina Razafitrimo, Girard Rafisandrantantsoa, Jean Théophile Cêtre-Sossah, Catherine Heraud, Jean-Michel Andriamandimby, Soa Fy |
description | Rabies is a lethal zoonotic encephalomyelitis that causes an estimated 59,000 human deaths yearly worldwide. Although developing countries of Asia and Africa bear the heaviest burden, surveillance and disease detection in these countries is often hampered by the absence of local laboratories able to diagnose rabies and/or the difficulties of sample shipment from low-access areas to national reference laboratories. Filter papers offer a convenient cost-effective alternative for the sampling, shipment, and storage of biological materials for the diagnosis of many pathogens including rabies virus, yet the properties of diagnostic tests using this support have not been evaluated thoroughly. Sensitivity and specificity of molecular diagnosis of rabies infection using a reverse transcription followed by a hemi-nested polymerase chain reaction (RT-hn-PCR) either directly on brain tissue or using brain tissue dried on filter paper were assessed on 113 suspected field animal samples in comparison to the direct fluorescent antibody test (FAT) recommended by the World Health Organization as one of the reference tests for rabies diagnosis. Impact of the duration of the storage was also evaluated. The sensitivity and the specificity of RT-hn-PCR i) on brain tissue were 96.6% (95% CI: [88.1-99.6]) and 92.7% (95% CI: [82.4-98.0]) respectively and ii) on brain tissue dried on filter paper 100% (95% CI: [93.8-100.0]) and 90.9% (95% CI: [80.0-97.0]) respectively. No loss of sensitivity of RT-hn-PCR on samples of brain tissue dried on filter paper left 7 days at ambient temperature was detected indicating that this method would enable analyzing impregnated filter papers sent to the national reference laboratory at ambient temperature within a 1-week shipment time. It could therefore be an effective alternative to facilitate storage and shipment of samples from low-access areas to enhance and expand rabies surveillance. |
doi_str_mv | 10.1371/journal.pntd.0008116 |
format | Article |
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Although developing countries of Asia and Africa bear the heaviest burden, surveillance and disease detection in these countries is often hampered by the absence of local laboratories able to diagnose rabies and/or the difficulties of sample shipment from low-access areas to national reference laboratories. Filter papers offer a convenient cost-effective alternative for the sampling, shipment, and storage of biological materials for the diagnosis of many pathogens including rabies virus, yet the properties of diagnostic tests using this support have not been evaluated thoroughly. Sensitivity and specificity of molecular diagnosis of rabies infection using a reverse transcription followed by a hemi-nested polymerase chain reaction (RT-hn-PCR) either directly on brain tissue or using brain tissue dried on filter paper were assessed on 113 suspected field animal samples in comparison to the direct fluorescent antibody test (FAT) recommended by the World Health Organization as one of the reference tests for rabies diagnosis. Impact of the duration of the storage was also evaluated. The sensitivity and the specificity of RT-hn-PCR i) on brain tissue were 96.6% (95% CI: [88.1-99.6]) and 92.7% (95% CI: [82.4-98.0]) respectively and ii) on brain tissue dried on filter paper 100% (95% CI: [93.8-100.0]) and 90.9% (95% CI: [80.0-97.0]) respectively. No loss of sensitivity of RT-hn-PCR on samples of brain tissue dried on filter paper left 7 days at ambient temperature was detected indicating that this method would enable analyzing impregnated filter papers sent to the national reference laboratory at ambient temperature within a 1-week shipment time. It could therefore be an effective alternative to facilitate storage and shipment of samples from low-access areas to enhance and expand rabies surveillance.</description><identifier>ISSN: 1935-2735</identifier><identifier>ISSN: 1935-2727</identifier><identifier>EISSN: 1935-2735</identifier><identifier>DOI: 10.1371/journal.pntd.0008116</identifier><identifier>PMID: 32142519</identifier><language>eng</language><publisher>United States: Public Library of Science</publisher><subject>Access ; Africa ; Ambient temperature ; Animals ; Antibodies ; Asia ; Authorship ; Biological materials ; Biology and Life Sciences ; Brain ; Brain - virology ; Brain research ; Countries ; Desiccation - methods ; Developing Countries ; Diagnosis ; Diagnostic systems ; Diagnostic tests ; Disease detection ; Disease recognition ; DNA ; Encephalomyelitis ; Engineering and Technology ; Epidemiology ; Evaluation ; Fatalities ; Filter paper ; Fluorescence ; Fluorescent antibody test ; Funding ; Health aspects ; Human health and pathology ; Infectious diseases ; Laboratories ; LDCs ; Life Sciences ; Lyssavirus ; Medicine and Health Sciences ; Molecular diagnostic techniques ; Molecular Diagnostic Techniques - methods ; Nucleotide sequence ; Pathogens ; PCR ; Polymerase Chain Reaction ; Rabies ; Rabies - diagnosis ; Rabies virus - genetics ; Rabies virus - isolation & purification ; Research and Analysis Methods ; Reverse Transcriptase Polymerase Chain Reaction ; Reverse transcription ; Samples ; Santé publique et épidémiologie ; Sensitivity analysis ; Sensitivity and Specificity ; Software ; Specificity ; Specimen Handling - methods ; Storage ; Supervision ; Surveillance ; Temperature ; Tissue ; Tissues ; Transcription ; Tropical diseases ; Virology ; Viruses ; Zoonoses</subject><ispartof>PLoS neglected tropical diseases, 2020-03, Vol.14 (3), p.e0008116-e0008116</ispartof><rights>COPYRIGHT 2020 Public Library of Science</rights><rights>2020 Rasolonjatovo et al. This is an open access article distributed under the terms of the Creative Commons Attribution License: http://creativecommons.org/licenses/by/4.0/ (the “License”), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License.</rights><rights>Attribution</rights><rights>2020 Rasolonjatovo et al 2020 Rasolonjatovo et al</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c658t-bb4d398d6aeaf5b674a158f8a8e54d37edc66b6ebf8c04e97edd876223d078b63</citedby><cites>FETCH-LOGICAL-c658t-bb4d398d6aeaf5b674a158f8a8e54d37edc66b6ebf8c04e97edd876223d078b63</cites><orcidid>0000-0002-0355-0898 ; 0000-0002-4401-3706 ; 0000-0002-6397-836X ; 0000-0003-1107-0859</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC7135319/pdf/$$EPDF$$P50$$Gpubmedcentral$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC7135319/$$EHTML$$P50$$Gpubmedcentral$$Hfree_for_read</linktohtml><link.rule.ids>230,314,727,780,784,864,885,2100,2926,23865,27923,27924,53790,53792,79371,79372</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/32142519$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink><backlink>$$Uhttps://hal.inrae.fr/hal-02623837$$DView record in HAL$$Hfree_for_read</backlink></links><search><contributor>Gilbert, Amy T.</contributor><creatorcontrib>Rasolonjatovo, Felana Suzah</creatorcontrib><creatorcontrib>Guis, Hélène</creatorcontrib><creatorcontrib>Rajeev, Malavika</creatorcontrib><creatorcontrib>Dacheux, Laurent</creatorcontrib><creatorcontrib>Arivony Nomenjanahary, Lalaina</creatorcontrib><creatorcontrib>Razafitrimo, Girard</creatorcontrib><creatorcontrib>Rafisandrantantsoa, Jean Théophile</creatorcontrib><creatorcontrib>Cêtre-Sossah, Catherine</creatorcontrib><creatorcontrib>Heraud, Jean-Michel</creatorcontrib><creatorcontrib>Andriamandimby, Soa Fy</creatorcontrib><title>Enabling animal rabies diagnostic in low-access areas: Sensitivity and specificity of a molecular diagnostic test from cerebral tissue dried on filter paper</title><title>PLoS neglected tropical diseases</title><addtitle>PLoS Negl Trop Dis</addtitle><description>Rabies is a lethal zoonotic encephalomyelitis that causes an estimated 59,000 human deaths yearly worldwide. Although developing countries of Asia and Africa bear the heaviest burden, surveillance and disease detection in these countries is often hampered by the absence of local laboratories able to diagnose rabies and/or the difficulties of sample shipment from low-access areas to national reference laboratories. Filter papers offer a convenient cost-effective alternative for the sampling, shipment, and storage of biological materials for the diagnosis of many pathogens including rabies virus, yet the properties of diagnostic tests using this support have not been evaluated thoroughly. Sensitivity and specificity of molecular diagnosis of rabies infection using a reverse transcription followed by a hemi-nested polymerase chain reaction (RT-hn-PCR) either directly on brain tissue or using brain tissue dried on filter paper were assessed on 113 suspected field animal samples in comparison to the direct fluorescent antibody test (FAT) recommended by the World Health Organization as one of the reference tests for rabies diagnosis. Impact of the duration of the storage was also evaluated. The sensitivity and the specificity of RT-hn-PCR i) on brain tissue were 96.6% (95% CI: [88.1-99.6]) and 92.7% (95% CI: [82.4-98.0]) respectively and ii) on brain tissue dried on filter paper 100% (95% CI: [93.8-100.0]) and 90.9% (95% CI: [80.0-97.0]) respectively. No loss of sensitivity of RT-hn-PCR on samples of brain tissue dried on filter paper left 7 days at ambient temperature was detected indicating that this method would enable analyzing impregnated filter papers sent to the national reference laboratory at ambient temperature within a 1-week shipment time. It could therefore be an effective alternative to facilitate storage and shipment of samples from low-access areas to enhance and expand rabies surveillance.</description><subject>Access</subject><subject>Africa</subject><subject>Ambient temperature</subject><subject>Animals</subject><subject>Antibodies</subject><subject>Asia</subject><subject>Authorship</subject><subject>Biological materials</subject><subject>Biology and Life Sciences</subject><subject>Brain</subject><subject>Brain - virology</subject><subject>Brain research</subject><subject>Countries</subject><subject>Desiccation - methods</subject><subject>Developing Countries</subject><subject>Diagnosis</subject><subject>Diagnostic systems</subject><subject>Diagnostic tests</subject><subject>Disease detection</subject><subject>Disease recognition</subject><subject>DNA</subject><subject>Encephalomyelitis</subject><subject>Engineering and Technology</subject><subject>Epidemiology</subject><subject>Evaluation</subject><subject>Fatalities</subject><subject>Filter paper</subject><subject>Fluorescence</subject><subject>Fluorescent antibody test</subject><subject>Funding</subject><subject>Health aspects</subject><subject>Human health and pathology</subject><subject>Infectious diseases</subject><subject>Laboratories</subject><subject>LDCs</subject><subject>Life Sciences</subject><subject>Lyssavirus</subject><subject>Medicine and Health Sciences</subject><subject>Molecular diagnostic techniques</subject><subject>Molecular Diagnostic Techniques - methods</subject><subject>Nucleotide sequence</subject><subject>Pathogens</subject><subject>PCR</subject><subject>Polymerase Chain Reaction</subject><subject>Rabies</subject><subject>Rabies - diagnosis</subject><subject>Rabies virus - genetics</subject><subject>Rabies virus - isolation & purification</subject><subject>Research and Analysis Methods</subject><subject>Reverse Transcriptase Polymerase Chain Reaction</subject><subject>Reverse transcription</subject><subject>Samples</subject><subject>Santé publique et épidémiologie</subject><subject>Sensitivity analysis</subject><subject>Sensitivity and Specificity</subject><subject>Software</subject><subject>Specificity</subject><subject>Specimen Handling - methods</subject><subject>Storage</subject><subject>Supervision</subject><subject>Surveillance</subject><subject>Temperature</subject><subject>Tissue</subject><subject>Tissues</subject><subject>Transcription</subject><subject>Tropical diseases</subject><subject>Virology</subject><subject>Viruses</subject><subject>Zoonoses</subject><issn>1935-2735</issn><issn>1935-2727</issn><issn>1935-2735</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2020</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><sourceid>ABUWG</sourceid><sourceid>AFKRA</sourceid><sourceid>AZQEC</sourceid><sourceid>BENPR</sourceid><sourceid>CCPQU</sourceid><sourceid>DWQXO</sourceid><sourceid>DOA</sourceid><recordid>eNptU01vEzEQXSEQLYF_gMASEoJDgj_W9i4HpKoqtFIkDsDZ8tqziSvHDvZuUf8LPxYvSaukqvbg9fi9NzPPnqp6TfCCMEk-XccxBe0X2zDYBca4IUQ8qU5Jy_icSsafHvyfVC9yvsaYt7whz6sTRklNOWlPq78XQXfehRXSwW20R0l3DjKyTq9CzIMzyAXk45-5NgZyRjqBzp_RDwjZDe7GDbeFaVHegnG9M9M-9kijTfRgRq_TodQAeUB9ihtkIEGXSr7B5TwCssmBRTGg3vkBEtrqLaSX1bNe-wyv9uus-vX14uf55Xz5_dvV-dlybgRvhnnX1Za1jRUadM87IWtNeNM3ugFeTiRYI0QnoOsbg2toS8A2UlDKLJZNJ9iservT3fqY1d7YrChrsaS8lrggrnYIG_W12qZiVbpVUTv1PxDTSulUOvSgZNsYqiWxUEzWmGve9rZmAFT0bdtMWl_22cZuU2qDMBQjjkSPT4Jbq1W8UZIwzsqdzqqPO4H1A9rl2VJNMUwFZQ2TN6RgP-yTpfh7LParjcsGvNcB4jj1KGtW3g6doO8eQB93Yo9a6dKsC30sNZpJVJ0JRltOpJgcXTyCKp-FjTMxQLlmOCa8PyCsQfthnaMfBxdDPgbWO6BJMecE_b0DBKtpMO6qVtNgqP1gFNqbQ9PvSXeTwP4BG0gMdQ</recordid><startdate>20200301</startdate><enddate>20200301</enddate><creator>Rasolonjatovo, Felana Suzah</creator><creator>Guis, Hélène</creator><creator>Rajeev, Malavika</creator><creator>Dacheux, Laurent</creator><creator>Arivony Nomenjanahary, Lalaina</creator><creator>Razafitrimo, Girard</creator><creator>Rafisandrantantsoa, Jean Théophile</creator><creator>Cêtre-Sossah, Catherine</creator><creator>Heraud, Jean-Michel</creator><creator>Andriamandimby, Soa Fy</creator><general>Public Library of Science</general><general>Public Library of Science (PLoS)</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7QL</scope><scope>7SS</scope><scope>7T2</scope><scope>7T7</scope><scope>7U9</scope><scope>7X7</scope><scope>7XB</scope><scope>88E</scope><scope>8C1</scope><scope>8FD</scope><scope>8FI</scope><scope>8FJ</scope><scope>8FK</scope><scope>ABUWG</scope><scope>AEUYN</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BENPR</scope><scope>C1K</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>F1W</scope><scope>FR3</scope><scope>FYUFA</scope><scope>GHDGH</scope><scope>H94</scope><scope>H95</scope><scope>H97</scope><scope>K9.</scope><scope>L.G</scope><scope>M0S</scope><scope>M1P</scope><scope>M7N</scope><scope>P64</scope><scope>PIMPY</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>7X8</scope><scope>1XC</scope><scope>VOOES</scope><scope>5PM</scope><scope>DOA</scope><orcidid>https://orcid.org/0000-0002-0355-0898</orcidid><orcidid>https://orcid.org/0000-0002-4401-3706</orcidid><orcidid>https://orcid.org/0000-0002-6397-836X</orcidid><orcidid>https://orcid.org/0000-0003-1107-0859</orcidid></search><sort><creationdate>20200301</creationdate><title>Enabling animal rabies diagnostic in low-access areas: Sensitivity and specificity of a molecular diagnostic test from cerebral tissue dried on filter paper</title><author>Rasolonjatovo, Felana Suzah ; Guis, Hélène ; Rajeev, Malavika ; Dacheux, Laurent ; Arivony Nomenjanahary, Lalaina ; Razafitrimo, Girard ; Rafisandrantantsoa, Jean Théophile ; Cêtre-Sossah, Catherine ; Heraud, Jean-Michel ; Andriamandimby, Soa Fy</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c658t-bb4d398d6aeaf5b674a158f8a8e54d37edc66b6ebf8c04e97edd876223d078b63</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2020</creationdate><topic>Access</topic><topic>Africa</topic><topic>Ambient temperature</topic><topic>Animals</topic><topic>Antibodies</topic><topic>Asia</topic><topic>Authorship</topic><topic>Biological materials</topic><topic>Biology and Life Sciences</topic><topic>Brain</topic><topic>Brain - 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Academic</collection><collection>Hyper Article en Ligne (HAL)</collection><collection>Hyper Article en Ligne (HAL) (Open Access)</collection><collection>PubMed Central (Full Participant titles)</collection><collection>DOAJ Directory of Open Access Journals</collection><jtitle>PLoS neglected tropical diseases</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Rasolonjatovo, Felana Suzah</au><au>Guis, Hélène</au><au>Rajeev, Malavika</au><au>Dacheux, Laurent</au><au>Arivony Nomenjanahary, Lalaina</au><au>Razafitrimo, Girard</au><au>Rafisandrantantsoa, Jean Théophile</au><au>Cêtre-Sossah, Catherine</au><au>Heraud, Jean-Michel</au><au>Andriamandimby, Soa Fy</au><au>Gilbert, Amy T.</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Enabling animal rabies diagnostic in low-access areas: Sensitivity and specificity of a molecular diagnostic test from cerebral tissue dried on filter paper</atitle><jtitle>PLoS neglected tropical diseases</jtitle><addtitle>PLoS Negl Trop Dis</addtitle><date>2020-03-01</date><risdate>2020</risdate><volume>14</volume><issue>3</issue><spage>e0008116</spage><epage>e0008116</epage><pages>e0008116-e0008116</pages><issn>1935-2735</issn><issn>1935-2727</issn><eissn>1935-2735</eissn><abstract>Rabies is a lethal zoonotic encephalomyelitis that causes an estimated 59,000 human deaths yearly worldwide. Although developing countries of Asia and Africa bear the heaviest burden, surveillance and disease detection in these countries is often hampered by the absence of local laboratories able to diagnose rabies and/or the difficulties of sample shipment from low-access areas to national reference laboratories. Filter papers offer a convenient cost-effective alternative for the sampling, shipment, and storage of biological materials for the diagnosis of many pathogens including rabies virus, yet the properties of diagnostic tests using this support have not been evaluated thoroughly. Sensitivity and specificity of molecular diagnosis of rabies infection using a reverse transcription followed by a hemi-nested polymerase chain reaction (RT-hn-PCR) either directly on brain tissue or using brain tissue dried on filter paper were assessed on 113 suspected field animal samples in comparison to the direct fluorescent antibody test (FAT) recommended by the World Health Organization as one of the reference tests for rabies diagnosis. Impact of the duration of the storage was also evaluated. The sensitivity and the specificity of RT-hn-PCR i) on brain tissue were 96.6% (95% CI: [88.1-99.6]) and 92.7% (95% CI: [82.4-98.0]) respectively and ii) on brain tissue dried on filter paper 100% (95% CI: [93.8-100.0]) and 90.9% (95% CI: [80.0-97.0]) respectively. No loss of sensitivity of RT-hn-PCR on samples of brain tissue dried on filter paper left 7 days at ambient temperature was detected indicating that this method would enable analyzing impregnated filter papers sent to the national reference laboratory at ambient temperature within a 1-week shipment time. It could therefore be an effective alternative to facilitate storage and shipment of samples from low-access areas to enhance and expand rabies surveillance.</abstract><cop>United States</cop><pub>Public Library of Science</pub><pmid>32142519</pmid><doi>10.1371/journal.pntd.0008116</doi><orcidid>https://orcid.org/0000-0002-0355-0898</orcidid><orcidid>https://orcid.org/0000-0002-4401-3706</orcidid><orcidid>https://orcid.org/0000-0002-6397-836X</orcidid><orcidid>https://orcid.org/0000-0003-1107-0859</orcidid><oa>free_for_read</oa></addata></record> |
fulltext | fulltext |
identifier | ISSN: 1935-2735 |
ispartof | PLoS neglected tropical diseases, 2020-03, Vol.14 (3), p.e0008116-e0008116 |
issn | 1935-2735 1935-2727 1935-2735 |
language | eng |
recordid | cdi_plos_journals_2390725470 |
source | MEDLINE; DOAJ Directory of Open Access Journals; Elektronische Zeitschriftenbibliothek - Frei zugängliche E-Journals; PubMed Central Open Access; Public Library of Science (PLoS); PubMed Central |
subjects | Access Africa Ambient temperature Animals Antibodies Asia Authorship Biological materials Biology and Life Sciences Brain Brain - virology Brain research Countries Desiccation - methods Developing Countries Diagnosis Diagnostic systems Diagnostic tests Disease detection Disease recognition DNA Encephalomyelitis Engineering and Technology Epidemiology Evaluation Fatalities Filter paper Fluorescence Fluorescent antibody test Funding Health aspects Human health and pathology Infectious diseases Laboratories LDCs Life Sciences Lyssavirus Medicine and Health Sciences Molecular diagnostic techniques Molecular Diagnostic Techniques - methods Nucleotide sequence Pathogens PCR Polymerase Chain Reaction Rabies Rabies - diagnosis Rabies virus - genetics Rabies virus - isolation & purification Research and Analysis Methods Reverse Transcriptase Polymerase Chain Reaction Reverse transcription Samples Santé publique et épidémiologie Sensitivity analysis Sensitivity and Specificity Software Specificity Specimen Handling - methods Storage Supervision Surveillance Temperature Tissue Tissues Transcription Tropical diseases Virology Viruses Zoonoses |
title | Enabling animal rabies diagnostic in low-access areas: Sensitivity and specificity of a molecular diagnostic test from cerebral tissue dried on filter paper |
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