Viral DNA genomes in sera of farrowing sows with or without stillbirths
A study was conducted to investigate the serum virome of sows with and without stillbirths after farrowing. Sera from sows with at least one stillbirth or with normal litters were collected immediately after farrowing. Viral DNA was extracted from serum pools and submitted to high throughput sequenc...
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| Veröffentlicht in: | PloS one 2020-03, Vol.15 (3), p.e0230714-e0230714 |
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| creator | Tochetto, Caroline Muterle Varela, Ana Paula Alves de Lima, Diane Loiko, Márcia Regina Mengue Scheffer, Camila Pinto Paim, Willian Cerva, Cristine Schmidt, Candice Cibulski, Samuel Paulo Cano Ortiz, Lucía Callegari Jacques, Sidia Maria Franco, Ana Cláudia Quoos Mayer, Fabiana Roehe, Paulo Michel |
| description | A study was conducted to investigate the serum virome of sows with and without stillbirths after farrowing. Sera from sows with at least one stillbirth or with normal litters were collected immediately after farrowing. Viral DNA was extracted from serum pools and submitted to high throughput sequencing. No differences in the proportion of virus-related reads were found in both groups (p > 0.05). A variety of viral DNA genomes were identified, mostly representative of three viral families: Anelloviridae, Circoviridae and Smacoviridae. Besides, a number of novel unclassified circular Rep-encoding single stranded DNA (CRESS DNA) viruses were also identified. These findings suggest that the presence of such viral genomes in sows' sera bears no correlation with stillbirths' occurrence; it seems likely that these constitute part of the normal serum microbiome of sows at farrowing. |
| doi_str_mv | 10.1371/journal.pone.0230714 |
| format | Article |
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This is an open access article distributed under the terms of the Creative Commons Attribution License: http://creativecommons.org/licenses/by/4.0/ (the “License”), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License.</rights><rights>2020 Tochetto et al 2020 Tochetto et al</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c692t-1a2881b81bf9bd73d92bf9b437d00786faa97dd31ff69717770c21e8f42878043</citedby><cites>FETCH-LOGICAL-c692t-1a2881b81bf9bd73d92bf9b437d00786faa97dd31ff69717770c21e8f42878043</cites><orcidid>0000-0002-9804-6175 ; 0000-0002-9324-8536</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC7098587/pdf/$$EPDF$$P50$$Gpubmedcentral$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC7098587/$$EHTML$$P50$$Gpubmedcentral$$Hfree_for_read</linktohtml><link.rule.ids>230,314,723,776,780,860,881,2096,2915,23845,27901,27902,53766,53768,79342,79343</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/32214388$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Tochetto, Caroline</creatorcontrib><creatorcontrib>Muterle Varela, Ana Paula</creatorcontrib><creatorcontrib>Alves de Lima, Diane</creatorcontrib><creatorcontrib>Loiko, Márcia Regina</creatorcontrib><creatorcontrib>Mengue Scheffer, Camila</creatorcontrib><creatorcontrib>Pinto Paim, Willian</creatorcontrib><creatorcontrib>Cerva, Cristine</creatorcontrib><creatorcontrib>Schmidt, Candice</creatorcontrib><creatorcontrib>Cibulski, Samuel Paulo</creatorcontrib><creatorcontrib>Cano Ortiz, Lucía</creatorcontrib><creatorcontrib>Callegari Jacques, Sidia Maria</creatorcontrib><creatorcontrib>Franco, Ana Cláudia</creatorcontrib><creatorcontrib>Quoos Mayer, Fabiana</creatorcontrib><creatorcontrib>Roehe, Paulo Michel</creatorcontrib><title>Viral DNA genomes in sera of farrowing sows with or without stillbirths</title><title>PloS one</title><addtitle>PLoS One</addtitle><description>A study was conducted to investigate the serum virome of sows with and without stillbirths after farrowing. Sera from sows with at least one stillbirth or with normal litters were collected immediately after farrowing. Viral DNA was extracted from serum pools and submitted to high throughput sequencing. No differences in the proportion of virus-related reads were found in both groups (p > 0.05). A variety of viral DNA genomes were identified, mostly representative of three viral families: Anelloviridae, Circoviridae and Smacoviridae. Besides, a number of novel unclassified circular Rep-encoding single stranded DNA (CRESS DNA) viruses were also identified. 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Sera from sows with at least one stillbirth or with normal litters were collected immediately after farrowing. Viral DNA was extracted from serum pools and submitted to high throughput sequencing. No differences in the proportion of virus-related reads were found in both groups (p > 0.05). A variety of viral DNA genomes were identified, mostly representative of three viral families: Anelloviridae, Circoviridae and Smacoviridae. Besides, a number of novel unclassified circular Rep-encoding single stranded DNA (CRESS DNA) viruses were also identified. 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| source | DOAJ Directory of Open Access Journals; Elektronische Zeitschriftenbibliothek - Frei zugängliche E-Journals; PubMed Central; Free Full-Text Journals in Chemistry; Public Library of Science (PLoS) |
| subjects | Bioinformatics Biology and life sciences Deoxyribonucleic acid DNA DNA sequencing DNA viruses Genomes Genomics Medicine and Health Sciences Microbiomes Next-generation sequencing Novels Pathogens Research and Analysis Methods Stillbirth Viruses |
| title | Viral DNA genomes in sera of farrowing sows with or without stillbirths |
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