Multigene phylogeny and taxonomy of Dendryphion hydei and Torula hydei spp. nov. from herbaceous litter in northern Thailand
During our studies on asexual fungi colonizing herbaceous litter in northern Thailand, we discovered two new fungal species, viz. Dendryphion hydei and Torula hydei spp. nov. The latter are examined, and their morphological characters are described as well as their DNA sequences from ribosomal and p...
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| creator | Li, Junfu Jeewon, Rajesh Mortimer, Peter E Doilom, Mingkwan Phookamsak, Rungtiwa Promputtha, Itthayakorn |
| description | During our studies on asexual fungi colonizing herbaceous litter in northern Thailand, we discovered two new fungal species, viz. Dendryphion hydei and Torula hydei spp. nov. The latter are examined, and their morphological characters are described as well as their DNA sequences from ribosomal and protein coding genes are analysed to infer their phylogenetic relationships with extant fungi. Torula hydei is different from other similar Torula species in having tiny and catenate conidia. Dendryphion hydei can be distinguished from other similar Dendryphion species in having large conidiophores and subhyaline to pale olivaceous brown, 2-4(-5)-septate conidia. Multigene phylogenetic analyses of a combined LSU, SSU, TEF1-α, RPB2 and ITS DNA sequence dataset generated from maximum likelihood and Bayesian inference analyses indicate that T. hydei forms a distinct lineage and basal to T. fici. Dendryphion hydei forms a distinct lineage and basal to D. europaeum, D. comosum, D. aquaticum and D. fluminicola within Torulaceae (Pleosporales, Dothideomycetes). |
| doi_str_mv | 10.1371/journal.pone.0228067 |
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Dendryphion hydei and Torula hydei spp. nov. The latter are examined, and their morphological characters are described as well as their DNA sequences from ribosomal and protein coding genes are analysed to infer their phylogenetic relationships with extant fungi. Torula hydei is different from other similar Torula species in having tiny and catenate conidia. Dendryphion hydei can be distinguished from other similar Dendryphion species in having large conidiophores and subhyaline to pale olivaceous brown, 2-4(-5)-septate conidia. Multigene phylogenetic analyses of a combined LSU, SSU, TEF1-α, RPB2 and ITS DNA sequence dataset generated from maximum likelihood and Bayesian inference analyses indicate that T. hydei forms a distinct lineage and basal to T. fici. Dendryphion hydei forms a distinct lineage and basal to D. europaeum, D. comosum, D. aquaticum and D. fluminicola within Torulaceae (Pleosporales, Dothideomycetes).</description><identifier>ISSN: 1932-6203</identifier><identifier>EISSN: 1932-6203</identifier><identifier>DOI: 10.1371/journal.pone.0228067</identifier><identifier>PMID: 32023268</identifier><language>eng</language><publisher>United States: Public Library of Science</publisher><subject>Agroforestry ; Ascomycota - classification ; Ascomycota - genetics ; Ascomycota - physiology ; Bayes Theorem ; Bayesian analysis ; Biodiversity ; Biogeography ; Biology and Life Sciences ; Computer and Information Sciences ; Computer software industry ; Conidia ; Cryptococcus - classification ; Cryptococcus - genetics ; Cryptococcus - physiology ; Deoxyribonucleic acid ; DNA ; DNA, Fungal - chemistry ; DNA, Fungal - metabolism ; Fungi ; Gene sequencing ; Genes ; Laboratories ; Litter ; Microscopy ; Morphology ; Nucleotide sequence ; Phylogenetics ; Phylogeny ; Research and Analysis Methods ; RNA polymerase ; Sequence Analysis, DNA ; Species ; Statistical inference ; Taxonomy ; Thailand ; Thermal cycling</subject><ispartof>PloS one, 2020-02, Vol.15 (2), p.e0228067-e0228067</ispartof><rights>COPYRIGHT 2020 Public Library of Science</rights><rights>2020 Li et al. This is an open access article distributed under the terms of the Creative Commons Attribution License: http://creativecommons.org/licenses/by/4.0/ (the “License”), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. 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Dendryphion hydei and Torula hydei spp. nov. The latter are examined, and their morphological characters are described as well as their DNA sequences from ribosomal and protein coding genes are analysed to infer their phylogenetic relationships with extant fungi. Torula hydei is different from other similar Torula species in having tiny and catenate conidia. Dendryphion hydei can be distinguished from other similar Dendryphion species in having large conidiophores and subhyaline to pale olivaceous brown, 2-4(-5)-septate conidia. Multigene phylogenetic analyses of a combined LSU, SSU, TEF1-α, RPB2 and ITS DNA sequence dataset generated from maximum likelihood and Bayesian inference analyses indicate that T. hydei forms a distinct lineage and basal to T. fici. Dendryphion hydei forms a distinct lineage and basal to D. europaeum, D. comosum, D. aquaticum and D. fluminicola within Torulaceae (Pleosporales, Dothideomycetes).</description><subject>Agroforestry</subject><subject>Ascomycota - classification</subject><subject>Ascomycota - genetics</subject><subject>Ascomycota - physiology</subject><subject>Bayes Theorem</subject><subject>Bayesian analysis</subject><subject>Biodiversity</subject><subject>Biogeography</subject><subject>Biology and Life Sciences</subject><subject>Computer and Information Sciences</subject><subject>Computer software industry</subject><subject>Conidia</subject><subject>Cryptococcus - classification</subject><subject>Cryptococcus - genetics</subject><subject>Cryptococcus - physiology</subject><subject>Deoxyribonucleic acid</subject><subject>DNA</subject><subject>DNA, Fungal - chemistry</subject><subject>DNA, Fungal - metabolism</subject><subject>Fungi</subject><subject>Gene 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Rungtiwa</au><au>Promputtha, Itthayakorn</au><au>Chiang, Tzen-Yuh</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Multigene phylogeny and taxonomy of Dendryphion hydei and Torula hydei spp. nov. from herbaceous litter in northern Thailand</atitle><jtitle>PloS one</jtitle><addtitle>PLoS One</addtitle><date>2020-02-05</date><risdate>2020</risdate><volume>15</volume><issue>2</issue><spage>e0228067</spage><epage>e0228067</epage><pages>e0228067-e0228067</pages><issn>1932-6203</issn><eissn>1932-6203</eissn><abstract>During our studies on asexual fungi colonizing herbaceous litter in northern Thailand, we discovered two new fungal species, viz. Dendryphion hydei and Torula hydei spp. nov. The latter are examined, and their morphological characters are described as well as their DNA sequences from ribosomal and protein coding genes are analysed to infer their phylogenetic relationships with extant fungi. Torula hydei is different from other similar Torula species in having tiny and catenate conidia. Dendryphion hydei can be distinguished from other similar Dendryphion species in having large conidiophores and subhyaline to pale olivaceous brown, 2-4(-5)-septate conidia. Multigene phylogenetic analyses of a combined LSU, SSU, TEF1-α, RPB2 and ITS DNA sequence dataset generated from maximum likelihood and Bayesian inference analyses indicate that T. hydei forms a distinct lineage and basal to T. fici. Dendryphion hydei forms a distinct lineage and basal to D. europaeum, D. comosum, D. aquaticum and D. fluminicola within Torulaceae (Pleosporales, Dothideomycetes).</abstract><cop>United States</cop><pub>Public Library of Science</pub><pmid>32023268</pmid><doi>10.1371/journal.pone.0228067</doi><tpages>e0228067</tpages><orcidid>https://orcid.org/0000-0003-3376-4376</orcidid><oa>free_for_read</oa></addata></record> |
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| subjects | Agroforestry Ascomycota - classification Ascomycota - genetics Ascomycota - physiology Bayes Theorem Bayesian analysis Biodiversity Biogeography Biology and Life Sciences Computer and Information Sciences Computer software industry Conidia Cryptococcus - classification Cryptococcus - genetics Cryptococcus - physiology Deoxyribonucleic acid DNA DNA, Fungal - chemistry DNA, Fungal - metabolism Fungi Gene sequencing Genes Laboratories Litter Microscopy Morphology Nucleotide sequence Phylogenetics Phylogeny Research and Analysis Methods RNA polymerase Sequence Analysis, DNA Species Statistical inference Taxonomy Thailand Thermal cycling |
| title | Multigene phylogeny and taxonomy of Dendryphion hydei and Torula hydei spp. nov. from herbaceous litter in northern Thailand |
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