Matrix-assisted laser desorption/ionization time of flight mass spectrometry identification of Vibrio (Listonella) anguillarum isolated from sea bass and sea bream
Vibrio (Listonella) anguillarum is a pathogenic bacterium causing septicaemia in a wide range of marine organisms and inducing severe mortalities, thus it is crucial to conduct its accurate and rapid identification. The aim of this study was to assess MALDI-TOF MS as a method of choice for identific...
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creator | Kazazić, Snježana P Topić Popović, Natalija Strunjak-Perović, Ivančica Babić, Sanja Florio, Daniela Fioravanti, Marialetizia Bojanić, Krunoslav Čož-Rakovac, Rozelindra |
description | Vibrio (Listonella) anguillarum is a pathogenic bacterium causing septicaemia in a wide range of marine organisms and inducing severe mortalities, thus it is crucial to conduct its accurate and rapid identification. The aim of this study was to assess MALDI-TOF MS as a method of choice for identification of clinical V. anguillarum isolates from affected marine fish. Since the method accuracy might be influenced by the type of the medium used, as well as by the incubation conditions, we tested V. anguillarum isolates grown on standard media with and without the addition of NaCl, cultured at three incubation temperatures, and at three incubation periods. The best scores were retrieved for V. anguillarum strains grown on NaCl-supplemented tryptone soy agar (TSA) at 22°C and incubated for 48h (100% identification to species level; overall score 2.232), followed by incubation at 37°C and 48h (100% to species level; score 2.192). The strains grown on non-supplemented TSA gave the best readings when incubated at 22°C for 72h (100% identification to species level; overall score 2.182), followed by incubation at 15°C for 72h (100% to species level; score 2.160). Unreliable identifications and no-identifications were growing with the incubation duration at 37°C, on both media, amounting to 88.89% for 7d incubation on supplemented TSA, and 92.60% for 7d incubation on non-supplemented TSA. The age of the cultured strains and use of media significantly impacted the mass spectra, demonstrating that for reliable identification, MALDI-TOF MS protein fingerprinting with the on-target extraction should be performed on strains grown on a NaCl-supplemented medium at temperatures between 15 and 22°C, incubated for 48-72 hours. |
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The aim of this study was to assess MALDI-TOF MS as a method of choice for identification of clinical V. anguillarum isolates from affected marine fish. Since the method accuracy might be influenced by the type of the medium used, as well as by the incubation conditions, we tested V. anguillarum isolates grown on standard media with and without the addition of NaCl, cultured at three incubation temperatures, and at three incubation periods. The best scores were retrieved for V. anguillarum strains grown on NaCl-supplemented tryptone soy agar (TSA) at 22°C and incubated for 48h (100% identification to species level; overall score 2.232), followed by incubation at 37°C and 48h (100% to species level; score 2.192). The strains grown on non-supplemented TSA gave the best readings when incubated at 22°C for 72h (100% identification to species level; overall score 2.182), followed by incubation at 15°C for 72h (100% to species level; score 2.160). Unreliable identifications and no-identifications were growing with the incubation duration at 37°C, on both media, amounting to 88.89% for 7d incubation on supplemented TSA, and 92.60% for 7d incubation on non-supplemented TSA. The age of the cultured strains and use of media significantly impacted the mass spectra, demonstrating that for reliable identification, MALDI-TOF MS protein fingerprinting with the on-target extraction should be performed on strains grown on a NaCl-supplemented medium at temperatures between 15 and 22°C, incubated for 48-72 hours.</description><identifier>ISSN: 1932-6203</identifier><identifier>EISSN: 1932-6203</identifier><identifier>DOI: 10.1371/journal.pone.0225343</identifier><identifier>PMID: 31738803</identifier><language>eng</language><publisher>United States: Public Library of Science</publisher><subject>Animals ; Aquaculture ; Bacteria ; Bass - microbiology ; Biology and Life Sciences ; Biotechnology ; Bream ; Cluster Analysis ; Deoxyribonucleic acid ; DNA ; Earth Sciences ; Fingerprinting ; Halides ; Health aspects ; Identification ; Ionization ; Ions ; Laboratories ; Lasers ; Marine fish ; Marine organisms ; Mass spectra ; Mass spectrometry ; Mass spectroscopy ; Medicine and Health Sciences ; Methods ; Peptide mapping ; Physical Sciences ; Research and Analysis Methods ; Scientific imaging ; Sea bass ; Sea Bream - microbiology ; Sodium chloride ; Species ; Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization ; Spectroscopy ; Strains (organisms) ; Vibrio ; Vibrio - classification ; Waterborne diseases</subject><ispartof>PloS one, 2019-11, Vol.14 (11), p.e0225343-e0225343</ispartof><rights>COPYRIGHT 2019 Public Library of Science</rights><rights>2019 Kazazić et al. This is an open access article distributed under the terms of the Creative Commons Attribution License: http://creativecommons.org/licenses/by/4.0/ (the “License”), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License.</rights><rights>2019 Kazazić et al 2019 Kazazić et al</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c593t-99c9d2f8d0298540cbfbb9b34734ebf633709e3fa95cce4fe5eedcd24acfbd523</citedby><cites>FETCH-LOGICAL-c593t-99c9d2f8d0298540cbfbb9b34734ebf633709e3fa95cce4fe5eedcd24acfbd523</cites><orcidid>0000-0002-8897-0014</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC6860450/pdf/$$EPDF$$P50$$Gpubmedcentral$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC6860450/$$EHTML$$P50$$Gpubmedcentral$$Hfree_for_read</linktohtml><link.rule.ids>230,314,723,776,780,860,881,2096,2915,23845,27901,27902,53766,53768,79343,79344</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/31738803$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Kazazić, Snježana P</creatorcontrib><creatorcontrib>Topić Popović, Natalija</creatorcontrib><creatorcontrib>Strunjak-Perović, Ivančica</creatorcontrib><creatorcontrib>Babić, Sanja</creatorcontrib><creatorcontrib>Florio, Daniela</creatorcontrib><creatorcontrib>Fioravanti, Marialetizia</creatorcontrib><creatorcontrib>Bojanić, Krunoslav</creatorcontrib><creatorcontrib>Čož-Rakovac, Rozelindra</creatorcontrib><title>Matrix-assisted laser desorption/ionization time of flight mass spectrometry identification of Vibrio (Listonella) anguillarum isolated from sea bass and sea bream</title><title>PloS one</title><addtitle>PLoS One</addtitle><description>Vibrio (Listonella) anguillarum is a pathogenic bacterium causing septicaemia in a wide range of marine organisms and inducing severe mortalities, thus it is crucial to conduct its accurate and rapid identification. 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Unreliable identifications and no-identifications were growing with the incubation duration at 37°C, on both media, amounting to 88.89% for 7d incubation on supplemented TSA, and 92.60% for 7d incubation on non-supplemented TSA. The age of the cultured strains and use of media significantly impacted the mass spectra, demonstrating that for reliable identification, MALDI-TOF MS protein fingerprinting with the on-target extraction should be performed on strains grown on a NaCl-supplemented medium at temperatures between 15 and 22°C, incubated for 48-72 hours.</description><subject>Animals</subject><subject>Aquaculture</subject><subject>Bacteria</subject><subject>Bass - microbiology</subject><subject>Biology and Life Sciences</subject><subject>Biotechnology</subject><subject>Bream</subject><subject>Cluster Analysis</subject><subject>Deoxyribonucleic acid</subject><subject>DNA</subject><subject>Earth Sciences</subject><subject>Fingerprinting</subject><subject>Halides</subject><subject>Health aspects</subject><subject>Identification</subject><subject>Ionization</subject><subject>Ions</subject><subject>Laboratories</subject><subject>Lasers</subject><subject>Marine fish</subject><subject>Marine organisms</subject><subject>Mass spectra</subject><subject>Mass spectrometry</subject><subject>Mass spectroscopy</subject><subject>Medicine and Health Sciences</subject><subject>Methods</subject><subject>Peptide mapping</subject><subject>Physical Sciences</subject><subject>Research and Analysis Methods</subject><subject>Scientific imaging</subject><subject>Sea bass</subject><subject>Sea Bream - 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The aim of this study was to assess MALDI-TOF MS as a method of choice for identification of clinical V. anguillarum isolates from affected marine fish. Since the method accuracy might be influenced by the type of the medium used, as well as by the incubation conditions, we tested V. anguillarum isolates grown on standard media with and without the addition of NaCl, cultured at three incubation temperatures, and at three incubation periods. The best scores were retrieved for V. anguillarum strains grown on NaCl-supplemented tryptone soy agar (TSA) at 22°C and incubated for 48h (100% identification to species level; overall score 2.232), followed by incubation at 37°C and 48h (100% to species level; score 2.192). The strains grown on non-supplemented TSA gave the best readings when incubated at 22°C for 72h (100% identification to species level; overall score 2.182), followed by incubation at 15°C for 72h (100% to species level; score 2.160). Unreliable identifications and no-identifications were growing with the incubation duration at 37°C, on both media, amounting to 88.89% for 7d incubation on supplemented TSA, and 92.60% for 7d incubation on non-supplemented TSA. The age of the cultured strains and use of media significantly impacted the mass spectra, demonstrating that for reliable identification, MALDI-TOF MS protein fingerprinting with the on-target extraction should be performed on strains grown on a NaCl-supplemented medium at temperatures between 15 and 22°C, incubated for 48-72 hours.</abstract><cop>United States</cop><pub>Public Library of Science</pub><pmid>31738803</pmid><doi>10.1371/journal.pone.0225343</doi><orcidid>https://orcid.org/0000-0002-8897-0014</orcidid><oa>free_for_read</oa></addata></record> |
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source | MEDLINE; DOAJ Directory of Open Access Journals; Elektronische Zeitschriftenbibliothek - Frei zugängliche E-Journals; PubMed Central; Free Full-Text Journals in Chemistry; Public Library of Science (PLoS) |
subjects | Animals Aquaculture Bacteria Bass - microbiology Biology and Life Sciences Biotechnology Bream Cluster Analysis Deoxyribonucleic acid DNA Earth Sciences Fingerprinting Halides Health aspects Identification Ionization Ions Laboratories Lasers Marine fish Marine organisms Mass spectra Mass spectrometry Mass spectroscopy Medicine and Health Sciences Methods Peptide mapping Physical Sciences Research and Analysis Methods Scientific imaging Sea bass Sea Bream - microbiology Sodium chloride Species Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization Spectroscopy Strains (organisms) Vibrio Vibrio - classification Waterborne diseases |
title | Matrix-assisted laser desorption/ionization time of flight mass spectrometry identification of Vibrio (Listonella) anguillarum isolated from sea bass and sea bream |
url | https://sfx.bib-bvb.de/sfx_tum?ctx_ver=Z39.88-2004&ctx_enc=info:ofi/enc:UTF-8&ctx_tim=2025-02-02T04%3A34%3A15IST&url_ver=Z39.88-2004&url_ctx_fmt=infofi/fmt:kev:mtx:ctx&rfr_id=info:sid/primo.exlibrisgroup.com:primo3-Article-gale_plos_&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.genre=article&rft.atitle=Matrix-assisted%20laser%20desorption/ionization%20time%20of%20flight%20mass%20spectrometry%20identification%20of%20Vibrio%20(Listonella)%20anguillarum%20isolated%20from%20sea%20bass%20and%20sea%20bream&rft.jtitle=PloS%20one&rft.au=Kazazi%C4%87,%20Snje%C5%BEana%20P&rft.date=2019-11-18&rft.volume=14&rft.issue=11&rft.spage=e0225343&rft.epage=e0225343&rft.pages=e0225343-e0225343&rft.issn=1932-6203&rft.eissn=1932-6203&rft_id=info:doi/10.1371/journal.pone.0225343&rft_dat=%3Cgale_plos_%3EA606140418%3C/gale_plos_%3E%3Curl%3E%3C/url%3E&disable_directlink=true&sfx.directlink=off&sfx.report_link=0&rft_id=info:oai/&rft_pqid=2315509112&rft_id=info:pmid/31738803&rft_galeid=A606140418&rft_doaj_id=oai_doaj_org_article_f28304b27f80496094e3995031634cf0&rfr_iscdi=true |