Characterization of the complete mitogenome of Anopheles aquasalis, and phylogenetic divergences among Anopheles from diverse geographic zones
Whole mitogenome sequences (mtDNA) have been exploited for insect ecology studies, using them as molecular markers to reconstruct phylogenies, or to infer phylogeographic relationships and gene flow. Recent Anopheles phylogenomic studies have provided information regarding the time of deep lineage d...
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| Veröffentlicht in: | PloS one 2019-09, Vol.14 (9), p.e0219523-e0219523 |
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| creator | Martinez-Villegas, Luis Assis-Geraldo, Juliana Koerich, Leonardo B Collier, Travis C Lee, Yoosook Main, Bradley J Rodrigues, Nilton B Orfano, Alessandra S Pires, Ana C A M Campolina, Thais B Nacif-Pimenta, Rafael Baia-da-Silva, Djane C Duarte, Ana P M Bahia, Ana C Rios-Velásquez, Claudia M Lacerda, Marcus V G Monteiro, Wuelton M Lanzaro, Gregory C Secundino, Nagila F C Pimenta, Paulo F P |
| description | Whole mitogenome sequences (mtDNA) have been exploited for insect ecology studies, using them as molecular markers to reconstruct phylogenies, or to infer phylogeographic relationships and gene flow. Recent Anopheles phylogenomic studies have provided information regarding the time of deep lineage divergences within the genus. Here we report the complete 15,393 bp mtDNA sequences of Anopheles aquasalis, a Neotropical human malaria vector. When comparing its structure and base composition with other relevant and available anopheline mitogenomes, high similarity and conserved genomic features were observed. Furthermore, 22 mtDNA sequences comprising anopheline and Dipteran sibling species were analyzed to reconstruct phylogenies and estimate dates of divergence between taxa. Phylogenetic analysis using complete mtDNA sequences suggests that A. aquasalis diverged from the Anopheles albitarsis complex ~28 million years ago (MYA), and ~38 MYA from Anopheles darlingi. Bayesian analysis suggests that the most recent ancestor of Nyssorhynchus and Anopheles + Cellia was extant ~83 MYA, corroborating current estimates of ~79-100 MYA. Additional sampling and publication of African, Asian, and North American anopheline mitogenomes would improve the resolution of the Anopheles phylogeny and clarify early continental dispersal routes. |
| doi_str_mv | 10.1371/journal.pone.0219523 |
| format | Article |
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Recent Anopheles phylogenomic studies have provided information regarding the time of deep lineage divergences within the genus. Here we report the complete 15,393 bp mtDNA sequences of Anopheles aquasalis, a Neotropical human malaria vector. When comparing its structure and base composition with other relevant and available anopheline mitogenomes, high similarity and conserved genomic features were observed. Furthermore, 22 mtDNA sequences comprising anopheline and Dipteran sibling species were analyzed to reconstruct phylogenies and estimate dates of divergence between taxa. Phylogenetic analysis using complete mtDNA sequences suggests that A. aquasalis diverged from the Anopheles albitarsis complex ~28 million years ago (MYA), and ~38 MYA from Anopheles darlingi. Bayesian analysis suggests that the most recent ancestor of Nyssorhynchus and Anopheles + Cellia was extant ~83 MYA, corroborating current estimates of ~79-100 MYA. Additional sampling and publication of African, Asian, and North American anopheline mitogenomes would improve the resolution of the Anopheles phylogeny and clarify early continental dispersal routes.</description><identifier>ISSN: 1932-6203</identifier><identifier>EISSN: 1932-6203</identifier><identifier>DOI: 10.1371/journal.pone.0219523</identifier><identifier>PMID: 31479460</identifier><language>eng</language><publisher>United States: Public Library of Science</publisher><subject>Agricultural research ; Animals ; Anopheles ; Anopheles - classification ; Anopheles - genetics ; Anopheles aquasalis ; Base Composition ; Bayesian analysis ; Biology and Life Sciences ; Cladistic analysis ; Computational Biology - methods ; Computer and Information Sciences ; Dispersal ; Divergence ; DNA sequencing ; Ecological monitoring ; Ecology ; EDTA ; Entomology ; Evolution ; Evolution, Molecular ; Gene flow ; Genes ; Genetic aspects ; Genome, Mitochondrial ; Genomes ; Genomics ; Genomics - methods ; Humans ; Immunology ; Insect ecology ; Insects ; Laboratories ; Malaria ; Medicine and Health Sciences ; Microbiota ; Mitochondrial DNA ; Molecular Sequence Annotation ; Mosquito Vectors - classification ; Mosquito Vectors - genetics ; Mosquitoes ; Phylogenetics ; Phylogeny ; Phylogeography ; Sequence Analysis, DNA ; Sibling species ; Transfer RNA ; Vector-borne diseases ; Veterinary colleges ; Veterinary medicine ; Whole Genome Sequencing</subject><ispartof>PloS one, 2019-09, Vol.14 (9), p.e0219523-e0219523</ispartof><rights>COPYRIGHT 2019 Public Library of Science</rights><rights>2019 Martinez-Villegas et al. This is an open access article distributed under the terms of the Creative Commons Attribution License: http://creativecommons.org/licenses/by/4.0/ (the “License”), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. 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Recent Anopheles phylogenomic studies have provided information regarding the time of deep lineage divergences within the genus. Here we report the complete 15,393 bp mtDNA sequences of Anopheles aquasalis, a Neotropical human malaria vector. When comparing its structure and base composition with other relevant and available anopheline mitogenomes, high similarity and conserved genomic features were observed. Furthermore, 22 mtDNA sequences comprising anopheline and Dipteran sibling species were analyzed to reconstruct phylogenies and estimate dates of divergence between taxa. Phylogenetic analysis using complete mtDNA sequences suggests that A. aquasalis diverged from the Anopheles albitarsis complex ~28 million years ago (MYA), and ~38 MYA from Anopheles darlingi. Bayesian analysis suggests that the most recent ancestor of Nyssorhynchus and Anopheles + Cellia was extant ~83 MYA, corroborating current estimates of ~79-100 MYA. Additional sampling and publication of African, Asian, and North American anopheline mitogenomes would improve the resolution of the Anopheles phylogeny and clarify early continental dispersal routes.</description><subject>Agricultural research</subject><subject>Animals</subject><subject>Anopheles</subject><subject>Anopheles - classification</subject><subject>Anopheles - genetics</subject><subject>Anopheles aquasalis</subject><subject>Base Composition</subject><subject>Bayesian analysis</subject><subject>Biology and Life Sciences</subject><subject>Cladistic analysis</subject><subject>Computational Biology - methods</subject><subject>Computer and Information Sciences</subject><subject>Dispersal</subject><subject>Divergence</subject><subject>DNA sequencing</subject><subject>Ecological monitoring</subject><subject>Ecology</subject><subject>EDTA</subject><subject>Entomology</subject><subject>Evolution</subject><subject>Evolution, Molecular</subject><subject>Gene 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Science Database</collection><collection>Health & Medical Collection (Alumni Edition)</collection><collection>Medical Database</collection><collection>Algology Mycology and Protozoology Abstracts (Microbiology C)</collection><collection>Biological Science Database</collection><collection>Engineering Database</collection><collection>Nursing & Allied Health Premium</collection><collection>ProQuest advanced technologies & aerospace journals</collection><collection>ProQuest Advanced Technologies & Aerospace Collection</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Environmental Science Database</collection><collection>Materials Science Collection</collection><collection>Publicly Available Content Database</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>ProQuest Central China</collection><collection>Engineering collection</collection><collection>Environmental Science Collection</collection><collection>Genetics Abstracts</collection><collection>MEDLINE - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><collection>Directory of Open Access Journals</collection><jtitle>PloS one</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Martinez-Villegas, Luis</au><au>Assis-Geraldo, Juliana</au><au>Koerich, Leonardo B</au><au>Collier, Travis C</au><au>Lee, Yoosook</au><au>Main, Bradley J</au><au>Rodrigues, Nilton B</au><au>Orfano, Alessandra S</au><au>Pires, Ana C A M</au><au>Campolina, Thais B</au><au>Nacif-Pimenta, Rafael</au><au>Baia-da-Silva, Djane C</au><au>Duarte, Ana P M</au><au>Bahia, Ana C</au><au>Rios-Velásquez, Claudia M</au><au>Lacerda, Marcus V G</au><au>Monteiro, Wuelton M</au><au>Lanzaro, Gregory C</au><au>Secundino, Nagila F C</au><au>Pimenta, Paulo F P</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Characterization of the complete mitogenome of Anopheles aquasalis, and phylogenetic divergences among Anopheles from diverse geographic zones</atitle><jtitle>PloS one</jtitle><addtitle>PLoS One</addtitle><date>2019-09-03</date><risdate>2019</risdate><volume>14</volume><issue>9</issue><spage>e0219523</spage><epage>e0219523</epage><pages>e0219523-e0219523</pages><issn>1932-6203</issn><eissn>1932-6203</eissn><abstract>Whole mitogenome sequences (mtDNA) have been exploited for insect ecology studies, using them as molecular markers to reconstruct phylogenies, or to infer phylogeographic relationships and gene flow. Recent Anopheles phylogenomic studies have provided information regarding the time of deep lineage divergences within the genus. Here we report the complete 15,393 bp mtDNA sequences of Anopheles aquasalis, a Neotropical human malaria vector. When comparing its structure and base composition with other relevant and available anopheline mitogenomes, high similarity and conserved genomic features were observed. Furthermore, 22 mtDNA sequences comprising anopheline and Dipteran sibling species were analyzed to reconstruct phylogenies and estimate dates of divergence between taxa. Phylogenetic analysis using complete mtDNA sequences suggests that A. aquasalis diverged from the Anopheles albitarsis complex ~28 million years ago (MYA), and ~38 MYA from Anopheles darlingi. Bayesian analysis suggests that the most recent ancestor of Nyssorhynchus and Anopheles + Cellia was extant ~83 MYA, corroborating current estimates of ~79-100 MYA. Additional sampling and publication of African, Asian, and North American anopheline mitogenomes would improve the resolution of the Anopheles phylogeny and clarify early continental dispersal routes.</abstract><cop>United States</cop><pub>Public Library of Science</pub><pmid>31479460</pmid><doi>10.1371/journal.pone.0219523</doi><tpages>e0219523</tpages><orcidid>https://orcid.org/0000-0002-0158-2482</orcidid><orcidid>https://orcid.org/0000-0002-8564-2023</orcidid><oa>free_for_read</oa></addata></record> |
| fulltext | fulltext |
| identifier | ISSN: 1932-6203 |
| ispartof | PloS one, 2019-09, Vol.14 (9), p.e0219523-e0219523 |
| issn | 1932-6203 1932-6203 |
| language | eng |
| recordid | cdi_plos_journals_2283952448 |
| source | MEDLINE; Public Library of Science; PubMed Central (PMC); Directory of Open Access Journals; Free Full-Text Journals in Chemistry; EZB Electronic Journals Library |
| subjects | Agricultural research Animals Anopheles Anopheles - classification Anopheles - genetics Anopheles aquasalis Base Composition Bayesian analysis Biology and Life Sciences Cladistic analysis Computational Biology - methods Computer and Information Sciences Dispersal Divergence DNA sequencing Ecological monitoring Ecology EDTA Entomology Evolution Evolution, Molecular Gene flow Genes Genetic aspects Genome, Mitochondrial Genomes Genomics Genomics - methods Humans Immunology Insect ecology Insects Laboratories Malaria Medicine and Health Sciences Microbiota Mitochondrial DNA Molecular Sequence Annotation Mosquito Vectors - classification Mosquito Vectors - genetics Mosquitoes Phylogenetics Phylogeny Phylogeography Sequence Analysis, DNA Sibling species Transfer RNA Vector-borne diseases Veterinary colleges Veterinary medicine Whole Genome Sequencing |
| title | Characterization of the complete mitogenome of Anopheles aquasalis, and phylogenetic divergences among Anopheles from diverse geographic zones |
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