ETDB-Caltech: A blockchain-based distributed public database for electron tomography
Three-dimensional electron microscopy techniques like electron tomography provide valuable insights into cellular structures, and present significant challenges for data storage and dissemination. Here we explored a novel method to publicly release more than 11,000 such datasets, more than 30 TB in...
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| Veröffentlicht in: | PloS one 2019-04, Vol.14 (4), p.e0215531-e0215531 |
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| container_issue | 4 |
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| creator | Ortega, Davi R Oikonomou, Catherine M Ding, H Jane Rees-Lee, Prudence Jensen, Grant J |
| description | Three-dimensional electron microscopy techniques like electron tomography provide valuable insights into cellular structures, and present significant challenges for data storage and dissemination. Here we explored a novel method to publicly release more than 11,000 such datasets, more than 30 TB in total, collected by our group. Our method, based on a peer-to-peer file sharing network built around a blockchain ledger, offers a distributed solution to data storage. In addition, we offer a user-friendly browser-based interface, https://etdb.caltech.edu, for anyone interested to explore and download our data. We discuss the relative advantages and disadvantages of this system and provide tools for other groups to mine our data and/or use the same approach to share their own imaging datasets. |
| doi_str_mv | 10.1371/journal.pone.0215531 |
| format | Article |
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We discuss the relative advantages and disadvantages of this system and provide tools for other groups to mine our data and/or use the same approach to share their own imaging datasets.</description><identifier>ISSN: 1932-6203</identifier><identifier>EISSN: 1932-6203</identifier><identifier>DOI: 10.1371/journal.pone.0215531</identifier><identifier>PMID: 30986271</identifier><language>eng</language><publisher>United States: Public Library of Science</publisher><subject>Archives & records ; Bioengineering ; Biology ; Blockchain ; Blockchains (Databases) ; Cellular structure ; Computer and Information Sciences ; Computer Communication Networks ; Cryptography ; Data storage ; Database administration ; Databases, Factual ; Datasets ; Downloading ; Electron Microscope Tomography ; Electron microscopy ; Engineering ; Engineering and Technology ; File sharing ; Humans ; Information Dissemination ; Information Storage and Retrieval ; Library collections ; Medical imaging ; Medicine and Health Sciences ; Methods ; Microscopy ; Novels ; Peer to peer networking ; Physical Sciences ; Public access ; Research and Analysis Methods ; Social networks ; Software ; Software upgrading ; Technology application ; Tomography ; Web browsers</subject><ispartof>PloS one, 2019-04, Vol.14 (4), p.e0215531-e0215531</ispartof><rights>COPYRIGHT 2019 Public Library of Science</rights><rights>2019 Ortega et al. This is an open access article distributed under the terms of the Creative Commons Attribution License: http://creativecommons.org/licenses/by/4.0/ (the “License”), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License.</rights><rights>2019 Ortega et al 2019 Ortega et al</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c758t-838c58fb400f4e97820541f7d461c08946109dcdce419f127a0d52b8c4e280e13</citedby><cites>FETCH-LOGICAL-c758t-838c58fb400f4e97820541f7d461c08946109dcdce419f127a0d52b8c4e280e13</cites><orcidid>0000-0003-1556-4864</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC6464211/pdf/$$EPDF$$P50$$Gpubmedcentral$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC6464211/$$EHTML$$P50$$Gpubmedcentral$$Hfree_for_read</linktohtml><link.rule.ids>230,314,723,776,780,860,881,2096,2915,23845,27901,27902,53766,53768,79343,79344</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/30986271$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Ortega, Davi R</creatorcontrib><creatorcontrib>Oikonomou, Catherine M</creatorcontrib><creatorcontrib>Ding, H Jane</creatorcontrib><creatorcontrib>Rees-Lee, Prudence</creatorcontrib><creatorcontrib>Jensen, Grant J</creatorcontrib><creatorcontrib>Alexandria</creatorcontrib><title>ETDB-Caltech: A blockchain-based distributed public database for electron tomography</title><title>PloS one</title><addtitle>PLoS One</addtitle><description>Three-dimensional electron microscopy techniques like electron tomography provide valuable insights into cellular structures, and present significant challenges for data storage and dissemination. 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We discuss the relative advantages and disadvantages of this system and provide tools for other groups to mine our data and/or use the same approach to share their own imaging datasets.</description><subject>Archives & records</subject><subject>Bioengineering</subject><subject>Biology</subject><subject>Blockchain</subject><subject>Blockchains (Databases)</subject><subject>Cellular structure</subject><subject>Computer and Information Sciences</subject><subject>Computer Communication Networks</subject><subject>Cryptography</subject><subject>Data storage</subject><subject>Database administration</subject><subject>Databases, Factual</subject><subject>Datasets</subject><subject>Downloading</subject><subject>Electron Microscope Tomography</subject><subject>Electron microscopy</subject><subject>Engineering</subject><subject>Engineering and Technology</subject><subject>File sharing</subject><subject>Humans</subject><subject>Information Dissemination</subject><subject>Information Storage and 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| subjects | Archives & records Bioengineering Biology Blockchain Blockchains (Databases) Cellular structure Computer and Information Sciences Computer Communication Networks Cryptography Data storage Database administration Databases, Factual Datasets Downloading Electron Microscope Tomography Electron microscopy Engineering Engineering and Technology File sharing Humans Information Dissemination Information Storage and Retrieval Library collections Medical imaging Medicine and Health Sciences Methods Microscopy Novels Peer to peer networking Physical Sciences Public access Research and Analysis Methods Social networks Software Software upgrading Technology application Tomography Web browsers |
| title | ETDB-Caltech: A blockchain-based distributed public database for electron tomography |
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