Comparative genome sequencing and analyses of Mycobacterium cosmeticum reveal potential for biodesulfization of gasoline
Mycobacterium cosmeticum is a nontuberculous Mycobacterium recovered from different water sources including household potable water and water collected at nail salon. Individual cases of this bacterium have been reported to be associated with gastrointestinal tract infections. Here we present the fi...
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| description | Mycobacterium cosmeticum is a nontuberculous Mycobacterium recovered from different water sources including household potable water and water collected at nail salon. Individual cases of this bacterium have been reported to be associated with gastrointestinal tract infections. Here we present the first whole-genome study and comparative analysis of two new clinically-derived Mycobacterium sp. UM_RHS (referred as UM_RHS after this) and Mycobacterium sp. UM_NYF (referred as UM_NYF after this) isolated from patients in Indonesia and Malaysia respectively to have a better understanding of the biological characteristic of these isolates. Both strains are likely Mycobacterium cosmeticum as supported by the evidence from molecular phylogenetic, comparative genomic and Average Nucleotide Identity (ANI) analyses. We found the presence of a considerably large number of putative virulence genes in the genomes of UM_RHS and UM_NYF. Interestingly, we also found a horizontally transferred genomic island carrying a putative dsz operon proposing that they may have potential to perform biodesulfization of dibenzothiophene (DBT) that may be effective in cost reduction and air pollution during fuel combustion. This comparative study may provide new insights into M. cosmeticum and serve as an important reference for future functional studies of this bacterial species. |
| doi_str_mv | 10.1371/journal.pone.0214663 |
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Individual cases of this bacterium have been reported to be associated with gastrointestinal tract infections. Here we present the first whole-genome study and comparative analysis of two new clinically-derived Mycobacterium sp. UM_RHS (referred as UM_RHS after this) and Mycobacterium sp. UM_NYF (referred as UM_NYF after this) isolated from patients in Indonesia and Malaysia respectively to have a better understanding of the biological characteristic of these isolates. Both strains are likely Mycobacterium cosmeticum as supported by the evidence from molecular phylogenetic, comparative genomic and Average Nucleotide Identity (ANI) analyses. We found the presence of a considerably large number of putative virulence genes in the genomes of UM_RHS and UM_NYF. Interestingly, we also found a horizontally transferred genomic island carrying a putative dsz operon proposing that they may have potential to perform biodesulfization of dibenzothiophene (DBT) that may be effective in cost reduction and air pollution during fuel combustion. This comparative study may provide new insights into M. cosmeticum and serve as an important reference for future functional studies of this bacterial species.</description><identifier>ISSN: 1932-6203</identifier><identifier>EISSN: 1932-6203</identifier><identifier>DOI: 10.1371/journal.pone.0214663</identifier><identifier>PMID: 30964891</identifier><language>eng</language><publisher>United States: Public Library of Science</publisher><subject>Air pollution ; Atmospheric pollution ; Bacterial genetics ; Beauty salons ; Bioinformatics ; Biology and Life Sciences ; Biotechnology ; Chromosomes ; Combustion ; Comparative analysis ; Comparative Genomic Hybridization ; Comparative literature ; Comparative studies ; Computer and Information Sciences ; Deoxyribonucleic acid ; Dibenzothiophene ; DNA ; DNA sequencing ; Drinking water ; Fuel combustion ; Gasoline ; Gasoline - microbiology ; Gastrointestinal system ; Gastrointestinal tract ; Gene sequencing ; Genes ; Genetic aspects ; Genome, Bacterial ; Genomes ; Genomic islands ; Genomics ; Households ; Infection ; Infections ; Medicine and Health Sciences ; Microbiology ; Mycobacteria ; Mycobacterium ; Mycobacterium - classification ; Mycobacterium - genetics ; Mycobacterium - pathogenicity ; Phylogenetics ; Phylogeny ; Physiological aspects ; Pollution ; Pollution control ; Pollution effects ; Potable water ; Research and analysis methods ; RNA, Ribosomal, 16S - classification ; RNA, Ribosomal, 16S - genetics ; Signal transduction ; Thiophene ; Thiophenes - chemistry ; Thiophenes - metabolism ; Tuberculosis ; Virulence ; Virulence (Microbiology) ; Virulence - genetics ; Water ; Water pollution ; Water sources</subject><ispartof>PloS one, 2019-04, Vol.14 (4), p.e0214663</ispartof><rights>COPYRIGHT 2019 Public Library of Science</rights><rights>2019 Wee et al. This is an open access article distributed under the terms of the Creative Commons Attribution License: http://creativecommons.org/licenses/by/4.0/ (the “License”), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. 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Individual cases of this bacterium have been reported to be associated with gastrointestinal tract infections. Here we present the first whole-genome study and comparative analysis of two new clinically-derived Mycobacterium sp. UM_RHS (referred as UM_RHS after this) and Mycobacterium sp. UM_NYF (referred as UM_NYF after this) isolated from patients in Indonesia and Malaysia respectively to have a better understanding of the biological characteristic of these isolates. Both strains are likely Mycobacterium cosmeticum as supported by the evidence from molecular phylogenetic, comparative genomic and Average Nucleotide Identity (ANI) analyses. We found the presence of a considerably large number of putative virulence genes in the genomes of UM_RHS and UM_NYF. Interestingly, we also found a horizontally transferred genomic island carrying a putative dsz operon proposing that they may have potential to perform biodesulfization of dibenzothiophene (DBT) that may be effective in cost reduction and air pollution during fuel combustion. This comparative study may provide new insights into M. cosmeticum and serve as an important reference for future functional studies of this bacterial species.</description><subject>Air pollution</subject><subject>Atmospheric pollution</subject><subject>Bacterial genetics</subject><subject>Beauty salons</subject><subject>Bioinformatics</subject><subject>Biology and Life Sciences</subject><subject>Biotechnology</subject><subject>Chromosomes</subject><subject>Combustion</subject><subject>Comparative analysis</subject><subject>Comparative Genomic Hybridization</subject><subject>Comparative literature</subject><subject>Comparative studies</subject><subject>Computer and Information Sciences</subject><subject>Deoxyribonucleic acid</subject><subject>Dibenzothiophene</subject><subject>DNA</subject><subject>DNA sequencing</subject><subject>Drinking water</subject><subject>Fuel combustion</subject><subject>Gasoline</subject><subject>Gasoline - microbiology</subject><subject>Gastrointestinal 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One</addtitle><date>2019-04-09</date><risdate>2019</risdate><volume>14</volume><issue>4</issue><spage>e0214663</spage><pages>e0214663-</pages><issn>1932-6203</issn><eissn>1932-6203</eissn><abstract>Mycobacterium cosmeticum is a nontuberculous Mycobacterium recovered from different water sources including household potable water and water collected at nail salon. Individual cases of this bacterium have been reported to be associated with gastrointestinal tract infections. Here we present the first whole-genome study and comparative analysis of two new clinically-derived Mycobacterium sp. UM_RHS (referred as UM_RHS after this) and Mycobacterium sp. UM_NYF (referred as UM_NYF after this) isolated from patients in Indonesia and Malaysia respectively to have a better understanding of the biological characteristic of these isolates. Both strains are likely Mycobacterium cosmeticum as supported by the evidence from molecular phylogenetic, comparative genomic and Average Nucleotide Identity (ANI) analyses. We found the presence of a considerably large number of putative virulence genes in the genomes of UM_RHS and UM_NYF. Interestingly, we also found a horizontally transferred genomic island carrying a putative dsz operon proposing that they may have potential to perform biodesulfization of dibenzothiophene (DBT) that may be effective in cost reduction and air pollution during fuel combustion. This comparative study may provide new insights into M. cosmeticum and serve as an important reference for future functional studies of this bacterial species.</abstract><cop>United States</cop><pub>Public Library of Science</pub><pmid>30964891</pmid><doi>10.1371/journal.pone.0214663</doi><tpages>e0214663</tpages><orcidid>https://orcid.org/0000-0001-8965-0680</orcidid><oa>free_for_read</oa></addata></record> |
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| ispartof | PloS one, 2019-04, Vol.14 (4), p.e0214663 |
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| source | MEDLINE; DOAJ Directory of Open Access Journals; Public Library of Science (PLoS) Journals Open Access; EZB-FREE-00999 freely available EZB journals; PubMed Central; Free Full-Text Journals in Chemistry |
| subjects | Air pollution Atmospheric pollution Bacterial genetics Beauty salons Bioinformatics Biology and Life Sciences Biotechnology Chromosomes Combustion Comparative analysis Comparative Genomic Hybridization Comparative literature Comparative studies Computer and Information Sciences Deoxyribonucleic acid Dibenzothiophene DNA DNA sequencing Drinking water Fuel combustion Gasoline Gasoline - microbiology Gastrointestinal system Gastrointestinal tract Gene sequencing Genes Genetic aspects Genome, Bacterial Genomes Genomic islands Genomics Households Infection Infections Medicine and Health Sciences Microbiology Mycobacteria Mycobacterium Mycobacterium - classification Mycobacterium - genetics Mycobacterium - pathogenicity Phylogenetics Phylogeny Physiological aspects Pollution Pollution control Pollution effects Potable water Research and analysis methods RNA, Ribosomal, 16S - classification RNA, Ribosomal, 16S - genetics Signal transduction Thiophene Thiophenes - chemistry Thiophenes - metabolism Tuberculosis Virulence Virulence (Microbiology) Virulence - genetics Water Water pollution Water sources |
| title | Comparative genome sequencing and analyses of Mycobacterium cosmeticum reveal potential for biodesulfization of gasoline |
| url | https://sfx.bib-bvb.de/sfx_tum?ctx_ver=Z39.88-2004&ctx_enc=info:ofi/enc:UTF-8&ctx_tim=2025-01-01T01%3A54%3A08IST&url_ver=Z39.88-2004&url_ctx_fmt=infofi/fmt:kev:mtx:ctx&rfr_id=info:sid/primo.exlibrisgroup.com:primo3-Article-gale_plos_&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.genre=article&rft.atitle=Comparative%20genome%20sequencing%20and%20analyses%20of%20Mycobacterium%20cosmeticum%20reveal%20potential%20for%20biodesulfization%20of%20gasoline&rft.jtitle=PloS%20one&rft.au=Wee,%20Wei%20Yee&rft.date=2019-04-09&rft.volume=14&rft.issue=4&rft.spage=e0214663&rft.pages=e0214663-&rft.issn=1932-6203&rft.eissn=1932-6203&rft_id=info:doi/10.1371/journal.pone.0214663&rft_dat=%3Cgale_plos_%3EA581813729%3C/gale_plos_%3E%3Curl%3E%3C/url%3E&disable_directlink=true&sfx.directlink=off&sfx.report_link=0&rft_id=info:oai/&rft_pqid=2208023907&rft_id=info:pmid/30964891&rft_galeid=A581813729&rft_doaj_id=oai_doaj_org_article_afa9bc8f16164e6393d40bc688fdaf22&rfr_iscdi=true |