Mitocondrial COI and 16S rDNA sequences support morphological identification and biogeography of deep-sea red crabs of the genus Chaceon (Crustacea, Decapoda, Geryonidae) in the Eastern Central and South Atlantic Ocean
The geographical spreading of new fishing activities and the increasingly deeper locations of these activities have shown the worldwide distribution of gerionid crabs and new descriptions of Chaceon taxa. However, incomplete penetrance, variable expressivity, and phenotypic overlap make the morphome...
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creator | Hernández, Mariano Martín, M Virginia Herrador-Gómez, Pedro M Jiménez, Sebastián Hernández-González, Carlos Barreiro, Santiago Sarralde, Roberto van Zyl, Barend Johannes Gamatham, Johny Charles Almeida, Teresa López-Abellán, Luis J |
description | The geographical spreading of new fishing activities and the increasingly deeper locations of these activities have shown the worldwide distribution of gerionid crabs and new descriptions of Chaceon taxa. However, incomplete penetrance, variable expressivity, and phenotypic overlap make the morphometric identification of these species difficult. In this study, partial sequences of the cytochrome c oxidase subunit 1 (COI) and 16S mitochondrial ribosomal RNA (16S rRNA) genes have been analyzed in Chaceon species from the Eastern Central and South Atlantic and compared with sequences of species from Western Atlantic. Our results corroborate the proposed morphological species and highlight the significant separation of the Eastern Atlantic species and those from Atlantic coasts of South America for both markers (97% Bayesian posterior probability, BPP / 83% Bootstrap replicates, BT). Interestingly, Chaceon sanctaehelenae shows a closer relationship with the species of the American coast than with those from the Eastern Atlantic. On the other hand, while COI marker clearly separates Chaceon atopus and Chaceon erytheiae species (99 BPP / 91% BT), these species share haplotypes for the 16S rRNA marker, pointing to a recent speciation process. Moreover, a close relationship was observed between Chaceon maritae and Chaceon affinis (94% BPP / 77% BT). The topologies of the trees obtained indicate that the ancestor of this genus was closer related to those species from South America than to those from the Eastern Atlantic. |
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However, incomplete penetrance, variable expressivity, and phenotypic overlap make the morphometric identification of these species difficult. In this study, partial sequences of the cytochrome c oxidase subunit 1 (COI) and 16S mitochondrial ribosomal RNA (16S rRNA) genes have been analyzed in Chaceon species from the Eastern Central and South Atlantic and compared with sequences of species from Western Atlantic. Our results corroborate the proposed morphological species and highlight the significant separation of the Eastern Atlantic species and those from Atlantic coasts of South America for both markers (97% Bayesian posterior probability, BPP / 83% Bootstrap replicates, BT). Interestingly, Chaceon sanctaehelenae shows a closer relationship with the species of the American coast than with those from the Eastern Atlantic. On the other hand, while COI marker clearly separates Chaceon atopus and Chaceon erytheiae species (99 BPP / 91% BT), these species share haplotypes for the 16S rRNA marker, pointing to a recent speciation process. Moreover, a close relationship was observed between Chaceon maritae and Chaceon affinis (94% BPP / 77% BT). The topologies of the trees obtained indicate that the ancestor of this genus was closer related to those species from South America than to those from the Eastern Atlantic.</description><identifier>ISSN: 1932-6203</identifier><identifier>EISSN: 1932-6203</identifier><identifier>DOI: 10.1371/journal.pone.0211717</identifier><identifier>PMID: 30742637</identifier><language>eng</language><publisher>United States: Public Library of Science</publisher><subject>Animal Shells - anatomy & histology ; Animals ; Atlantic Ocean ; Bayesian analysis ; Biogeography ; Biology and life sciences ; Brachyura - anatomy & histology ; Brachyura - genetics ; Chaceon ; Coastal environments ; Computer and Information Sciences ; Conditional probability ; Crabs ; Crustaceans ; Cytochrome ; Cytochrome c ; Cytochrome oxidase ; Cytochrome-c oxidase ; Cytochromes ; Decapoda ; Decapods (Crustaceans) ; Deep sea ; Deep sea environments ; DNA, Ribosomal - genetics ; Earth Sciences ; Ecology and Environmental Sciences ; Electron Transport Complex IV - genetics ; Female ; Fisheries ; Fishing ; Fishing (Recreation) ; Genes ; Genetic aspects ; Geography ; Haplotypes ; Identification ; Male ; Mitochondria ; Mitochondrial Proteins - genetics ; Morphology ; Oceans ; Oxidases ; Phylogeny ; Phylogeography ; Physiological aspects ; Research and Analysis Methods ; Ribonucleic acid ; Ribosomal RNA ; RNA ; RNA, Ribosomal, 16S - genetics ; rRNA 16S ; Speciation ; Species</subject><ispartof>PloS one, 2019-02, Vol.14 (2), p.e0211717-e0211717</ispartof><rights>COPYRIGHT 2019 Public Library of Science</rights><rights>2019 Hernández et al. This is an open access article distributed under the terms of the Creative Commons Attribution License: http://creativecommons.org/licenses/by/4.0/ (the “License”), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. 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However, incomplete penetrance, variable expressivity, and phenotypic overlap make the morphometric identification of these species difficult. In this study, partial sequences of the cytochrome c oxidase subunit 1 (COI) and 16S mitochondrial ribosomal RNA (16S rRNA) genes have been analyzed in Chaceon species from the Eastern Central and South Atlantic and compared with sequences of species from Western Atlantic. Our results corroborate the proposed morphological species and highlight the significant separation of the Eastern Atlantic species and those from Atlantic coasts of South America for both markers (97% Bayesian posterior probability, BPP / 83% Bootstrap replicates, BT). Interestingly, Chaceon sanctaehelenae shows a closer relationship with the species of the American coast than with those from the Eastern Atlantic. 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Teresa</au><au>López-Abellán, Luis J</au><au>Sawabe, Tomoo</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Mitocondrial COI and 16S rDNA sequences support morphological identification and biogeography of deep-sea red crabs of the genus Chaceon (Crustacea, Decapoda, Geryonidae) in the Eastern Central and South Atlantic Ocean</atitle><jtitle>PloS one</jtitle><addtitle>PLoS One</addtitle><date>2019-02-11</date><risdate>2019</risdate><volume>14</volume><issue>2</issue><spage>e0211717</spage><epage>e0211717</epage><pages>e0211717-e0211717</pages><issn>1932-6203</issn><eissn>1932-6203</eissn><abstract>The geographical spreading of new fishing activities and the increasingly deeper locations of these activities have shown the worldwide distribution of gerionid crabs and new descriptions of Chaceon taxa. However, incomplete penetrance, variable expressivity, and phenotypic overlap make the morphometric identification of these species difficult. In this study, partial sequences of the cytochrome c oxidase subunit 1 (COI) and 16S mitochondrial ribosomal RNA (16S rRNA) genes have been analyzed in Chaceon species from the Eastern Central and South Atlantic and compared with sequences of species from Western Atlantic. Our results corroborate the proposed morphological species and highlight the significant separation of the Eastern Atlantic species and those from Atlantic coasts of South America for both markers (97% Bayesian posterior probability, BPP / 83% Bootstrap replicates, BT). Interestingly, Chaceon sanctaehelenae shows a closer relationship with the species of the American coast than with those from the Eastern Atlantic. On the other hand, while COI marker clearly separates Chaceon atopus and Chaceon erytheiae species (99 BPP / 91% BT), these species share haplotypes for the 16S rRNA marker, pointing to a recent speciation process. Moreover, a close relationship was observed between Chaceon maritae and Chaceon affinis (94% BPP / 77% BT). The topologies of the trees obtained indicate that the ancestor of this genus was closer related to those species from South America than to those from the Eastern Atlantic.</abstract><cop>United States</cop><pub>Public Library of Science</pub><pmid>30742637</pmid><doi>10.1371/journal.pone.0211717</doi><orcidid>https://orcid.org/0000-0003-1219-0246</orcidid><orcidid>https://orcid.org/0000-0002-6831-4415</orcidid><orcidid>https://orcid.org/0000-0003-4435-2414</orcidid><oa>free_for_read</oa></addata></record> |
fulltext | fulltext |
identifier | ISSN: 1932-6203 |
ispartof | PloS one, 2019-02, Vol.14 (2), p.e0211717-e0211717 |
issn | 1932-6203 1932-6203 |
language | eng |
recordid | cdi_plos_journals_2178593784 |
source | MEDLINE; DOAJ Directory of Open Access Journals; Elektronische Zeitschriftenbibliothek - Frei zugängliche E-Journals; Public Library of Science (PLoS); PubMed Central; Free Full-Text Journals in Chemistry |
subjects | Animal Shells - anatomy & histology Animals Atlantic Ocean Bayesian analysis Biogeography Biology and life sciences Brachyura - anatomy & histology Brachyura - genetics Chaceon Coastal environments Computer and Information Sciences Conditional probability Crabs Crustaceans Cytochrome Cytochrome c Cytochrome oxidase Cytochrome-c oxidase Cytochromes Decapoda Decapods (Crustaceans) Deep sea Deep sea environments DNA, Ribosomal - genetics Earth Sciences Ecology and Environmental Sciences Electron Transport Complex IV - genetics Female Fisheries Fishing Fishing (Recreation) Genes Genetic aspects Geography Haplotypes Identification Male Mitochondria Mitochondrial Proteins - genetics Morphology Oceans Oxidases Phylogeny Phylogeography Physiological aspects Research and Analysis Methods Ribonucleic acid Ribosomal RNA RNA RNA, Ribosomal, 16S - genetics rRNA 16S Speciation Species |
title | Mitocondrial COI and 16S rDNA sequences support morphological identification and biogeography of deep-sea red crabs of the genus Chaceon (Crustacea, Decapoda, Geryonidae) in the Eastern Central and South Atlantic Ocean |
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